EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: ENSDARG00000054799 (Gene tree)
Gene ID: 100037336
Gene Symbol: rfc1
Alias: ab02c03|fa93a01|mg:ab02c03|wu:fa93a01|zgc:103730
Full Name: replication factor C (activator 1) 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 30946 bases
Position: chr1:23243093-23274038
Accession: ZDB-GENE-070410-99
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000156035	Ribosomal_L6	PF00347.23	7.3e-33	1	2
ENSDARP00000156035	Ribosomal_L6	PF00347.23	7.3e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000143948	-	4162	-	ENSDARP00000113369	1147 (aa)	-	F1Q5P6
ENSDART00000144004	-	314	-	-	- (aa)	-	-
ENSDART00000181658	-	2981	-	ENSDARP00000156035	193 (aa)	-	Q6DRM3
ENSDART00000146575	-	660	-	ENSDARP00000119715	126 (aa)	-	E9QDP5

Gene Model

Click here to download ENSDARG00000054799's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03010	Ribosome	KEGG
dre03030	DNA replication	KEGG
dre03420	Nucleotide excision repair	KEGG
dre03430	Mismatch repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000054799's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000054799	rfc1	100	100.000	ENSDARG00000037350	rpl9	100	100.000

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0002181	cytoplasmic translation	21873635.	IBA	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003689	DNA clamp loader activity	-	IEA	Function
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005663	DNA replication factor C complex	-	IEA	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0006412	translation	-	IEA	Process
GO:0019843	rRNA binding	-	IEA	Function
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component