EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000055080 (Gene tree)
Gene ID: 557528
Gene Symbol: rbm4.2
Alias: rbm4l|wu:fc25a01
Full Name: RNA binding motif protein 4.2
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 5166 bases
Position: chr7:22796083-22801248
Accession: ZDB-GENE-030131-3019
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000071862	zf-CCHC	PF00098.23	2e-05	1	1
ENSDARP00000102928	zf-CCHC	PF00098.23	2e-05	1	1
ENSDARP00000118556	zf-CCHC	PF00098.23	2e-05	1	1
ENSDARP00000071862	RRM_5	PF13893.6	1.5e-06	1	1
ENSDARP00000102928	RRM_5	PF13893.6	1.5e-06	1	1
ENSDARP00000118556	RRM_5	PF13893.6	1.5e-06	1	1
ENSDARP00000071862	RRM_1	PF00076.22	1e-31	1	2
ENSDARP00000071862	RRM_1	PF00076.22	1e-31	2	2
ENSDARP00000102928	RRM_1	PF00076.22	1e-31	1	2
ENSDARP00000102928	RRM_1	PF00076.22	1e-31	2	2
ENSDARP00000118556	RRM_1	PF00076.22	1e-31	1	2
ENSDARP00000118556	RRM_1	PF00076.22	1e-31	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000077395	-	2029	-	ENSDARP00000071862	384 (aa)	-	F1Q7F8
ENSDART00000146368	-	2054	-	ENSDARP00000118556	384 (aa)	-	F1Q7F8
ENSDART00000112169	-	2575	XM_005172289	ENSDARP00000102928	384 (aa)	XP_005172346	F1Q7F8
ENSDART00000140914	-	1036	-	-	- (aa)	-	-
ENSDART00000133632	-	750	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000055080's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000055080's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000055080	rbm4.2	100	53.846	ENSDARG00000036386	rbm4.1	79	76.812

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000055080	rbm4.2	100	51.529	ENSAPOG00000012353	rbm4.1	100	51.765	Acanthochromis_polyacanthus
ENSDARG00000055080	rbm4.2	100	52.113	ENSACIG00000016482	rbm4.1	100	51.887	Amphilophus_citrinellus
ENSDARG00000055080	rbm4.2	100	51.748	ENSAOCG00000010915	rbm4.1	100	50.698	Amphiprion_ocellaris
ENSDARG00000055080	rbm4.2	100	51.748	ENSAPEG00000009494	rbm4.1	100	50.698	Amphiprion_percula
ENSDARG00000055080	rbm4.2	99	50.258	ENSACLG00000007740	-	99	49.123	Astatotilapia_calliptera
ENSDARG00000055080	rbm4.2	100	51.878	ENSACLG00000007722	rbm4.1	100	51.415	Astatotilapia_calliptera
ENSDARG00000055080	rbm4.2	100	61.240	ENSAMXG00000036611	rbm4.1	100	60.567	Astyanax_mexicanus
ENSDARG00000055080	rbm4.2	99	55.584	ENSCSEG00000014359	-	99	50.370	Cynoglossus_semilaevis
ENSDARG00000055080	rbm4.2	100	48.941	ENSCVAG00000019349	rbm4.1	100	49.645	Cyprinodon_variegatus
ENSDARG00000055080	rbm4.2	100	50.353	ENSELUG00000013205	rbm4.1	100	49.882	Esox_lucius
ENSDARG00000055080	rbm4.2	100	49.409	ENSFHEG00000022926	rbm4.1	100	48.148	Fundulus_heteroclitus
ENSDARG00000055080	rbm4.2	91	52.432	ENSGMOG00000007455	-	99	50.746	Gadus_morhua
ENSDARG00000055080	rbm4.2	100	49.764	ENSGAFG00000019302	rbm4.1	75	71.111	Gambusia_affinis
ENSDARG00000055080	rbm4.2	99	52.821	ENSGACG00000000821	-	99	49.749	Gasterosteus_aculeatus
ENSDARG00000055080	rbm4.2	94	54.017	ENSGACG00000000822	rbm4.1	94	53.463	Gasterosteus_aculeatus
ENSDARG00000055080	rbm4.2	100	51.878	ENSHBUG00000011610	rbm4.1	100	51.415	Haplochromis_burtoni
ENSDARG00000055080	rbm4.2	100	68.205	ENSIPUG00000022937	rbm4.2	100	67.949	Ictalurus_punctatus
ENSDARG00000055080	rbm4.2	100	52.414	ENSIPUG00000022931	rbm4.1	100	51.620	Ictalurus_punctatus
ENSDARG00000055080	rbm4.2	100	49.882	ENSKMAG00000006556	rbm4.1	100	48.244	Kryptolebias_marmoratus
ENSDARG00000055080	rbm4.2	99	44.975	ENSKMAG00000006528	-	99	43.510	Kryptolebias_marmoratus
ENSDARG00000055080	rbm4.2	100	50.922	ENSLBEG00000019782	rbm4.1	100	51.508	Labrus_bergylta
ENSDARG00000055080	rbm4.2	99	56.812	ENSLBEG00000019756	-	99	56.477	Labrus_bergylta
ENSDARG00000055080	rbm4.2	97	55.670	ENSMAMG00000001760	-	98	53.247	Mastacembelus_armatus
ENSDARG00000055080	rbm4.2	100	51.878	ENSMZEG00005009205	rbm4.1	100	51.415	Maylandia_zebra
ENSDARG00000055080	rbm4.2	100	49.299	ENSMMOG00000020479	rbm4.1	100	50.234	Mola_mola
ENSDARG00000055080	rbm4.2	100	52.693	ENSMALG00000020544	rbm4.1	74	72.222	Monopterus_albus
ENSDARG00000055080	rbm4.2	99	55.867	ENSMALG00000020557	-	99	52.736	Monopterus_albus
ENSDARG00000055080	rbm4.2	100	51.878	ENSNBRG00000017755	rbm4.1	100	51.415	Neolamprologus_brichardi
ENSDARG00000055080	rbm4.2	100	51.878	ENSONIG00000015730	rbm4.1	100	51.415	Oreochromis_niloticus
ENSDARG00000055080	rbm4.2	100	50.472	ENSOMEG00000001001	rbm4.1	100	49.526	Oryzias_melastigma
ENSDARG00000055080	rbm4.2	57	50.000	ENSPMAG00000003433	rbm4.2	98	49.533	Petromyzon_marinus
ENSDARG00000055080	rbm4.2	99	51.295	ENSPFOG00000012685	-	99	47.487	Poecilia_formosa
ENSDARG00000055080	rbm4.2	100	49.764	ENSPFOG00000012675	rbm4.1	100	47.754	Poecilia_formosa
ENSDARG00000055080	rbm4.2	100	49.764	ENSPLAG00000018572	rbm4.1	75	71.111	Poecilia_latipinna
ENSDARG00000055080	rbm4.2	100	49.764	ENSPMEG00000006290	rbm4.1	75	71.111	Poecilia_mexicana
ENSDARG00000055080	rbm4.2	99	47.013	ENSPREG00000003764	-	99	44.417	Poecilia_reticulata
ENSDARG00000055080	rbm4.2	100	49.764	ENSPREG00000003724	rbm4.1	75	71.111	Poecilia_reticulata
ENSDARG00000055080	rbm4.2	100	51.878	ENSPNYG00000004662	rbm4.1	100	51.415	Pundamilia_nyererei
ENSDARG00000055080	rbm4.2	100	64.599	ENSPNAG00000013057	rbm4.2	100	64.341	Pygocentrus_nattereri
ENSDARG00000055080	rbm4.2	100	55.687	ENSPNAG00000002539	rbm4.1	100	55.792	Pygocentrus_nattereri
ENSDARG00000055080	rbm4.2	100	51.034	ENSSDUG00000003925	rbm4.1	100	50.580	Seriola_dumerili
ENSDARG00000055080	rbm4.2	99	55.584	ENSSDUG00000003936	-	99	54.591	Seriola_dumerili
ENSDARG00000055080	rbm4.2	99	53.616	ENSSLDG00000013157	-	99	54.094	Seriola_lalandi_dorsalis
ENSDARG00000055080	rbm4.2	100	51.034	ENSSLDG00000013147	rbm4.1	100	50.580	Seriola_lalandi_dorsalis
ENSDARG00000055080	rbm4.2	99	54.847	ENSSPAG00000019046	-	99	50.388	Stegastes_partitus
ENSDARG00000055080	rbm4.2	100	48.936	ENSTRUG00000013334	rbm4.1	100	48.227	Takifugu_rubripes
ENSDARG00000055080	rbm4.2	99	52.163	ENSTRUG00000013328	-	99	49.482	Takifugu_rubripes
ENSDARG00000055080	rbm4.2	97	51.169	ENSTNIG00000000316	-	98	51.444	Tetraodon_nigroviridis
ENSDARG00000055080	rbm4.2	100	49.219	ENSTNIG00000004821	rbm4.1	100	48.586	Tetraodon_nigroviridis
ENSDARG00000055080	rbm4.2	99	43.377	ENSXETG00000026649	rbm4b	99	42.051	Xenopus_tropicalis
ENSDARG00000055080	rbm4.2	100	49.764	ENSXCOG00000003731	rbm4.1	75	71.111	Xiphophorus_couchianus
ENSDARG00000055080	rbm4.2	100	49.764	ENSXMAG00000008069	rbm4.1	75	71.111	Xiphophorus_maculatus
ENSDARG00000055080	rbm4.2	99	49.351	ENSXMAG00000008059	-	99	47.607	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function