EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000055172 (Gene tree)
Gene ID: 795494
Gene Symbol: si:ch211-256m1.8
Alias: -
Full Name: si:ch211-256m1.8
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 11112 bases
Position: chr3:25154078-25165189
Accession: ZDB-GENE-131127-417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000129491	tRNA-synt_2	PF00152.20	1.1e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000156973	-	5367	XM_001335646	ENSDARP00000129491	1574 (aa)	XP_001335682	E7FA20

Gene Model

Click here to download ENSDARG00000055172's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00250	Alanine, aspartate and glutamate metabolism	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000055172's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000055172	si:ch211-256m1.8	100	64.924	ENSAPOG00000007012	si:ch211-256m1.8	100	64.773	Acanthochromis_polyacanthus
ENSDARG00000055172	si:ch211-256m1.8	100	65.195	ENSAOCG00000012258	si:ch211-256m1.8	100	65.069	Amphiprion_ocellaris
ENSDARG00000055172	si:ch211-256m1.8	100	65.195	ENSAPEG00000002724	si:ch211-256m1.8	100	65.069	Amphiprion_percula
ENSDARG00000055172	si:ch211-256m1.8	100	67.213	ENSATEG00000006278	si:ch211-256m1.8	100	67.213	Anabas_testudineus
ENSDARG00000055172	si:ch211-256m1.8	100	66.288	ENSACLG00000011503	si:ch211-256m1.8	100	66.162	Astatotilapia_calliptera
ENSDARG00000055172	si:ch211-256m1.8	100	75.992	ENSAMXG00000038245	si:ch211-256m1.8	100	75.992	Astyanax_mexicanus
ENSDARG00000055172	si:ch211-256m1.8	100	65.574	ENSCSEG00000006255	si:ch211-256m1.8	100	65.448	Cynoglossus_semilaevis
ENSDARG00000055172	si:ch211-256m1.8	100	66.163	ENSCVAG00000003376	si:ch211-256m1.8	100	66.037	Cyprinodon_variegatus
ENSDARG00000055172	si:ch211-256m1.8	100	68.797	ENSELUG00000010546	si:ch211-256m1.8	100	68.797	Esox_lucius
ENSDARG00000055172	si:ch211-256m1.8	100	64.070	ENSFHEG00000005847	si:ch211-256m1.8	100	64.070	Fundulus_heteroclitus
ENSDARG00000055172	si:ch211-256m1.8	100	65.657	ENSGAFG00000010269	si:ch211-256m1.8	100	65.657	Gambusia_affinis
ENSDARG00000055172	si:ch211-256m1.8	100	66.288	ENSHBUG00000014407	si:ch211-256m1.8	100	66.162	Haplochromis_burtoni
ENSDARG00000055172	si:ch211-256m1.8	100	63.021	ENSHCOG00000006884	si:ch211-256m1.8	100	65.436	Hippocampus_comes
ENSDARG00000055172	si:ch211-256m1.8	100	73.067	ENSIPUG00000022659	si:ch211-256m1.8	100	73.067	Ictalurus_punctatus
ENSDARG00000055172	si:ch211-256m1.8	100	66.667	ENSKMAG00000016377	si:ch211-256m1.8	100	66.540	Kryptolebias_marmoratus
ENSDARG00000055172	si:ch211-256m1.8	100	66.247	ENSLBEG00000010639	si:ch211-256m1.8	100	66.247	Labrus_bergylta
ENSDARG00000055172	si:ch211-256m1.8	100	60.842	ENSLOCG00000011127	si:ch211-256m1.8	100	60.842	Lepisosteus_oculatus
ENSDARG00000055172	si:ch211-256m1.8	99	66.033	ENSMAMG00000005651	si:ch211-256m1.8	99	66.033	Mastacembelus_armatus
ENSDARG00000055172	si:ch211-256m1.8	100	66.288	ENSMZEG00005006924	si:ch211-256m1.8	100	66.162	Maylandia_zebra
ENSDARG00000055172	si:ch211-256m1.8	100	63.115	ENSMMOG00000001736	si:ch211-256m1.8	100	63.115	Mola_mola
ENSDARG00000055172	si:ch211-256m1.8	100	66.288	ENSNBRG00000005143	si:ch211-256m1.8	100	66.162	Neolamprologus_brichardi
ENSDARG00000055172	si:ch211-256m1.8	100	64.254	ENSORLG00000022248	si:ch211-256m1.8	100	64.169	Oryzias_latipes
ENSDARG00000055172	si:ch211-256m1.8	100	64.272	ENSORLG00020000214	si:ch211-256m1.8	100	64.187	Oryzias_latipes_hni
ENSDARG00000055172	si:ch211-256m1.8	100	64.358	ENSORLG00015020297	si:ch211-256m1.8	100	65.014	Oryzias_latipes_hsok
ENSDARG00000055172	si:ch211-256m1.8	100	64.141	ENSOMEG00000004519	si:ch211-256m1.8	100	64.723	Oryzias_melastigma
ENSDARG00000055172	si:ch211-256m1.8	95	68.745	ENSPKIG00000007399	si:ch211-256m1.8	99	68.843	Paramormyrops_kingsleyae
ENSDARG00000055172	si:ch211-256m1.8	100	61.427	ENSPMGG00000007698	si:ch211-256m1.8	100	61.427	Periophthalmus_magnuspinnatus
ENSDARG00000055172	si:ch211-256m1.8	100	65.783	ENSPFOG00000005178	si:ch211-256m1.8	100	65.783	Poecilia_formosa
ENSDARG00000055172	si:ch211-256m1.8	100	65.741	ENSPLAG00000006872	si:ch211-256m1.8	100	65.741	Poecilia_latipinna
ENSDARG00000055172	si:ch211-256m1.8	100	65.720	ENSPMEG00000021815	si:ch211-256m1.8	100	65.720	Poecilia_mexicana
ENSDARG00000055172	si:ch211-256m1.8	100	65.972	ENSPREG00000018669	si:ch211-256m1.8	100	65.972	Poecilia_reticulata
ENSDARG00000055172	si:ch211-256m1.8	100	66.162	ENSPNYG00000018038	si:ch211-256m1.8	100	66.035	Pundamilia_nyererei
ENSDARG00000055172	si:ch211-256m1.8	99	73.174	ENSPNAG00000018965	-	99	73.232	Pygocentrus_nattereri
ENSDARG00000055172	si:ch211-256m1.8	99	74.591	ENSPNAG00000003552	si:ch211-256m1.8	99	74.811	Pygocentrus_nattereri
ENSDARG00000055172	si:ch211-256m1.8	99	67.129	ENSSFOG00015008344	si:ch211-256m1.8	99	67.129	Scleropages_formosus
ENSDARG00000055172	si:ch211-256m1.8	100	66.204	ENSSMAG00000007562	si:ch211-256m1.8	100	66.078	Scophthalmus_maximus
ENSDARG00000055172	si:ch211-256m1.8	100	68.288	ENSSDUG00000018180	si:ch211-256m1.8	100	68.162	Seriola_dumerili
ENSDARG00000055172	si:ch211-256m1.8	100	68.414	ENSSLDG00000020310	si:ch211-256m1.8	100	68.288	Seriola_lalandi_dorsalis
ENSDARG00000055172	si:ch211-256m1.8	100	65.346	ENSSPAG00000013419	si:ch211-256m1.8	100	65.409	Stegastes_partitus
ENSDARG00000055172	si:ch211-256m1.8	100	60.051	ENSTRUG00000023803	si:ch211-256m1.8	100	60.114	Takifugu_rubripes
ENSDARG00000055172	si:ch211-256m1.8	100	65.804	ENSXCOG00000017726	si:ch211-256m1.8	100	65.804	Xiphophorus_couchianus
ENSDARG00000055172	si:ch211-256m1.8	100	65.552	ENSXMAG00000026576	si:ch211-256m1.8	100	65.552	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0004067	asparaginase activity	21873635.	IBA	Function
GO:0004812	aminoacyl-tRNA ligase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006418	tRNA aminoacylation for protein translation	-	IEA	Process
GO:0008798	beta-aspartyl-peptidase activity	21873635.	IBA	Function
GO:0016746	transferase activity, transferring acyl groups	-	IEA	Function
GO:0016787	hydrolase activity	21873635.	IBA	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0033345	asparagine catabolic process via L-aspartate	21873635.	IBA	Process
GO:0051604	protein maturation	21873635.	IBA	Process