EuRBPDB

Description

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000055216 (Gene tree)
Gene ID: 573122
Gene Symbol: tuba1c
Alias: tuba1l
Full Name: tubulin%2C alpha 1c
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 3805
Position: chr23: 35690657-35694461
Accession: ZDB-GENE-061114-1
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000185884	-	1720	-	ENSDARP00000156734	435 (aa)	-	A0A2R8RZK5
ENSDART00000077539	-	1682	-	ENSDARP00000072006	451 (aa)	-	B8A518

Gene Model

Click here to download ENSDARG00000055216's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre04145	Phagosome	KEGG
dre04210	Apoptosis	KEGG
dre04530	Tight junction	KEGG
dre04540	Gap junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000055216's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000055216	tuba1c	99	99.539	ENSG00000167553	TUBA1C	100	98.226	Homo_sapiens
ENSDARG00000055216	tuba1c	99	99.770	ENSMUSG00000043091	Tuba1c	100	98.448	Mus_musculus
ENSDARG00000055216	tuba1c	100	97.118	ENSMUSG00000067338	Tuba3b	100	97.118	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0000278	mitotic cell cycle	21873635.	IBA	Process
GO:0003924	GTPase activity	-	IEA	Function
GO:0005200	structural constituent of cytoskeleton	21873635.	IBA	Function
GO:0005200	structural constituent of cytoskeleton	-	IEA	Function
GO:0005525	GTP binding	21873635.	IBA	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	21873635.	IBA	Component
GO:0005874	microtubule	-	IEA	Component
GO:0007017	microtubule-based process	21873635.	IBA	Process
GO:0007017	microtubule-based process	-	IEA	Process