EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000055868 (Gene tree)
Gene ID: 563247
Gene Symbol: rsl1d1
Alias: si:dkey-16i5.10
Full Name: ribosomal L1 domain containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9354 bases
Position: chr12:19384615-19393968
Accession: ZDB-GENE-130603-67
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000072728	Ribosomal_L1	PF00687.21	1.2e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000153185	-	473	-	-	- (aa)	-	-
ENSDART00000078266	-	1295	-	ENSDARP00000072728	373 (aa)	-	F1R8M8

Gene Model

Click here to download ENSDARG00000055868's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000055868's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000055868	rsl1d1	68	43.874	ENSG00000171490	RSL1D1	98	54.167	Homo_sapiens
ENSDARG00000055868	rsl1d1	91	61.345	ENSAPOG00000004544	rsl1d1	91	63.422	Acanthochromis_polyacanthus
ENSDARG00000055868	rsl1d1	64	43.515	ENSAMEG00000009570	RSL1D1	50	43.089	Ailuropoda_melanoleuca
ENSDARG00000055868	rsl1d1	82	58.306	ENSACIG00000006608	rsl1d1	92	60.000	Amphilophus_citrinellus
ENSDARG00000055868	rsl1d1	88	61.243	ENSAOCG00000001548	rsl1d1	91	62.651	Amphiprion_ocellaris
ENSDARG00000055868	rsl1d1	88	60.947	ENSAPEG00000003334	rsl1d1	91	62.349	Amphiprion_percula
ENSDARG00000055868	rsl1d1	81	59.248	ENSATEG00000009247	rsl1d1	92	60.234	Anabas_testudineus
ENSDARG00000055868	rsl1d1	83	45.584	ENSAPLG00000004451	RSL1D1	53	56.962	Anas_platyrhynchos
ENSDARG00000055868	rsl1d1	65	45.228	ENSANAG00000028185	-	64	43.110	Aotus_nancymaae
ENSDARG00000055868	rsl1d1	65	46.058	ENSANAG00000034590	-	57	43.617	Aotus_nancymaae
ENSDARG00000055868	rsl1d1	80	61.165	ENSACLG00000017535	rsl1d1	92	61.094	Astatotilapia_calliptera
ENSDARG00000055868	rsl1d1	88	62.139	ENSAMXG00000008624	rsl1d1	92	62.571	Astyanax_mexicanus
ENSDARG00000055868	rsl1d1	89	38.259	ENSBTAG00000014588	RSL1D1	57	43.956	Bos_taurus
ENSDARG00000055868	rsl1d1	65	46.473	ENSCJAG00000008375	-	55	45.185	Callithrix_jacchus
ENSDARG00000055868	rsl1d1	65	46.473	ENSCJAG00000042606	-	55	45.185	Callithrix_jacchus
ENSDARG00000055868	rsl1d1	87	36.579	ENSCAFG00000018865	RSL1D1	56	41.667	Canis_familiaris
ENSDARG00000055868	rsl1d1	94	30.402	ENSCAFG00020002457	-	74	30.114	Canis_lupus_dingo
ENSDARG00000055868	rsl1d1	87	37.838	ENSCAFG00020024488	-	59	41.577	Canis_lupus_dingo
ENSDARG00000055868	rsl1d1	87	40.469	ENSCHIG00000009867	-	80	40.698	Capra_hircus
ENSDARG00000055868	rsl1d1	95	37.778	ENSCHIG00000018658	-	52	45.200	Capra_hircus
ENSDARG00000055868	rsl1d1	73	41.606	ENSTSYG00000009276	RSL1D1	56	41.606	Carlito_syrichta
ENSDARG00000055868	rsl1d1	64	42.259	ENSCPOG00000010630	RSL1D1	59	40.364	Cavia_porcellus
ENSDARG00000055868	rsl1d1	68	44.269	ENSCCAG00000017391	-	57	43.262	Cebus_capucinus
ENSDARG00000055868	rsl1d1	85	37.216	ENSCCAG00000031641	-	56	41.606	Cebus_capucinus
ENSDARG00000055868	rsl1d1	65	42.739	ENSCCAG00000025197	-	57	41.573	Cebus_capucinus
ENSDARG00000055868	rsl1d1	68	42.520	ENSCATG00000031153	RSL1D1	63	42.125	Cercocebus_atys
ENSDARG00000055868	rsl1d1	92	33.652	ENSCLAG00000010975	RSL1D1	58	41.091	Chinchilla_lanigera
ENSDARG00000055868	rsl1d1	68	43.307	ENSCSAG00000008255	RSL1D1	55	42.963	Chlorocebus_sabaeus
ENSDARG00000055868	rsl1d1	65	41.322	ENSCHOG00000010827	RSL1D1	50	41.322	Choloepus_hoffmanni
ENSDARG00000055868	rsl1d1	68	52.549	ENSCPBG00000004564	RSL1D1	98	54.260	Chrysemys_picta_bellii
ENSDARG00000055868	rsl1d1	61	33.333	ENSCING00000011810	-	100	33.333	Ciona_intestinalis
ENSDARG00000055868	rsl1d1	72	32.616	ENSCSAVG00000011797	-	82	32.616	Ciona_savignyi
ENSDARG00000055868	rsl1d1	70	42.366	ENSCANG00000029202	RSL1D1	59	42.086	Colobus_angolensis_palliatus
ENSDARG00000055868	rsl1d1	82	39.053	ENSCGRG00001014989	Rsl1d1	79	40.625	Cricetulus_griseus_chok1gshd
ENSDARG00000055868	rsl1d1	82	39.053	ENSCGRG00000001905	Rsl1d1	79	40.625	Cricetulus_griseus_crigri
ENSDARG00000055868	rsl1d1	81	60.912	ENSCSEG00000019693	rsl1d1	89	59.939	Cynoglossus_semilaevis
ENSDARG00000055868	rsl1d1	83	62.379	ENSCVAG00000000672	rsl1d1	90	62.112	Cyprinodon_variegatus
ENSDARG00000055868	rsl1d1	65	45.267	ENSDNOG00000004601	-	56	42.960	Dasypus_novemcinctus
ENSDARG00000055868	rsl1d1	65	45.267	ENSDNOG00000040779	-	57	42.960	Dasypus_novemcinctus
ENSDARG00000055868	rsl1d1	81	39.935	ENSEBUG00000005400	-	58	43.154	Eptatretus_burgeri
ENSDARG00000055868	rsl1d1	64	45.188	ENSEASG00005011499	RSL1D1	50	44.715	Equus_asinus_asinus
ENSDARG00000055868	rsl1d1	91	60.177	ENSELUG00000019243	rsl1d1	94	61.231	Esox_lucius
ENSDARG00000055868	rsl1d1	87	37.795	ENSFCAG00000010114	RSL1D1	50	44.939	Felis_catus
ENSDARG00000055868	rsl1d1	90	37.500	ENSFDAG00000011414	RSL1D1	54	43.333	Fukomys_damarensis
ENSDARG00000055868	rsl1d1	84	61.465	ENSFHEG00000017235	rsl1d1	92	59.412	Fundulus_heteroclitus
ENSDARG00000055868	rsl1d1	81	52.145	ENSGMOG00000013048	rsl1d1	97	52.145	Gadus_morhua
ENSDARG00000055868	rsl1d1	65	52.697	ENSGALG00000033690	RSL1D1	61	48.905	Gallus_gallus
ENSDARG00000055868	rsl1d1	87	56.575	ENSGAFG00000020794	rsl1d1	86	58.462	Gambusia_affinis
ENSDARG00000055868	rsl1d1	93	51.003	ENSGACG00000004483	rsl1d1	90	52.469	Gasterosteus_aculeatus
ENSDARG00000055868	rsl1d1	68	43.307	ENSGGOG00000013463	RSL1D1	54	42.963	Gorilla_gorilla
ENSDARG00000055868	rsl1d1	80	61.765	ENSHBUG00000001551	rsl1d1	91	61.656	Haplochromis_burtoni
ENSDARG00000055868	rsl1d1	93	37.173	ENSHGLG00000006774	RSL1D1	61	40.672	Heterocephalus_glaber_female
ENSDARG00000055868	rsl1d1	93	37.173	ENSHGLG00100017781	RSL1D1	61	40.672	Heterocephalus_glaber_male
ENSDARG00000055868	rsl1d1	81	54.984	ENSHCOG00000015208	rsl1d1	86	56.369	Hippocampus_comes
ENSDARG00000055868	rsl1d1	98	59.788	ENSIPUG00000001677	rsl1d1	92	61.714	Ictalurus_punctatus
ENSDARG00000055868	rsl1d1	89	33.952	ENSJJAG00000012115	Rsl1d1	60	37.943	Jaculus_jaculus
ENSDARG00000055868	rsl1d1	93	57.955	ENSKMAG00000021908	rsl1d1	90	61.585	Kryptolebias_marmoratus
ENSDARG00000055868	rsl1d1	81	60.927	ENSLBEG00000001076	rsl1d1	89	60.436	Labrus_bergylta
ENSDARG00000055868	rsl1d1	84	62.893	ENSLOCG00000007416	rsl1d1	75	63.407	Lepisosteus_oculatus
ENSDARG00000055868	rsl1d1	86	39.891	ENSLAFG00000013664	RSL1D1	52	44.622	Loxodonta_africana
ENSDARG00000055868	rsl1d1	68	42.913	ENSMFAG00000037288	RSL1D1	55	42.593	Macaca_fascicularis
ENSDARG00000055868	rsl1d1	68	42.913	ENSMMUG00000019632	RSL1D1	99	50.318	Macaca_mulatta
ENSDARG00000055868	rsl1d1	68	43.307	ENSMNEG00000044196	RSL1D1	55	42.963	Macaca_nemestrina
ENSDARG00000055868	rsl1d1	68	43.307	ENSMLEG00000042058	RSL1D1	56	42.963	Mandrillus_leucophaeus
ENSDARG00000055868	rsl1d1	83	60.125	ENSMAMG00000004385	rsl1d1	92	61.243	Mastacembelus_armatus
ENSDARG00000055868	rsl1d1	80	61.165	ENSMZEG00005007150	rsl1d1	92	61.094	Maylandia_zebra
ENSDARG00000055868	rsl1d1	78	45.886	ENSMGAG00000000863	RSL1D1	58	50.579	Meleagris_gallopavo
ENSDARG00000055868	rsl1d1	82	38.529	ENSMOCG00000017724	Rsl1d1	56	43.320	Microtus_ochrogaster
ENSDARG00000055868	rsl1d1	85	53.125	ENSMMOG00000003730	rsl1d1	100	55.518	Mola_mola
ENSDARG00000055868	rsl1d1	78	44.136	ENSMODG00000004625	-	52	50.840	Monodelphis_domestica
ENSDARG00000055868	rsl1d1	79	37.417	ENSMODG00000029494	-	56	42.324	Monodelphis_domestica
ENSDARG00000055868	rsl1d1	68	65.098	ENSMALG00000009531	rsl1d1	91	58.997	Monopterus_albus
ENSDARG00000055868	rsl1d1	95	37.121	ENSMUSG00000005846	Rsl1d1	60	41.758	Mus_musculus
ENSDARG00000055868	rsl1d1	95	36.935	MGP_PahariEiJ_G0016164	Rsl1d1	60	41.758	Mus_pahari
ENSDARG00000055868	rsl1d1	95	37.374	MGP_SPRETEiJ_G0021352	Rsl1d1	60	42.125	Mus_spretus
ENSDARG00000055868	rsl1d1	92	35.248	ENSNGAG00000009086	-	51	41.525	Nannospalax_galili
ENSDARG00000055868	rsl1d1	92	33.501	ENSNGAG00000013578	-	60	38.095	Nannospalax_galili
ENSDARG00000055868	rsl1d1	79	60.577	ENSNBRG00000002777	rsl1d1	91	61.493	Neolamprologus_brichardi
ENSDARG00000055868	rsl1d1	68	42.913	ENSNLEG00000012149	-	71	42.491	Nomascus_leucogenys
ENSDARG00000055868	rsl1d1	68	43.701	ENSNLEG00000010196	-	54	43.704	Nomascus_leucogenys
ENSDARG00000055868	rsl1d1	91	41.803	ENSOPRG00000004442	-	53	47.280	Ochotona_princeps
ENSDARG00000055868	rsl1d1	80	58.842	ENSONIG00000019757	rsl1d1	95	59.880	Oreochromis_niloticus
ENSDARG00000055868	rsl1d1	58	49.537	ENSOANG00000009408	-	51	49.537	Ornithorhynchus_anatinus
ENSDARG00000055868	rsl1d1	93	35.396	ENSOCUG00000004751	RSL1D1	62	40.690	Oryctolagus_cuniculus
ENSDARG00000055868	rsl1d1	94	54.775	ENSORLG00000002877	rsl1d1	91	57.362	Oryzias_latipes
ENSDARG00000055868	rsl1d1	94	54.494	ENSORLG00020006636	rsl1d1	91	57.055	Oryzias_latipes_hni
ENSDARG00000055868	rsl1d1	94	54.494	ENSORLG00015005427	rsl1d1	91	57.055	Oryzias_latipes_hsok
ENSDARG00000055868	rsl1d1	87	57.229	ENSOMEG00000008036	rsl1d1	91	57.522	Oryzias_melastigma
ENSDARG00000055868	rsl1d1	89	36.911	ENSOGAG00000015151	RSL1D1	50	45.082	Otolemur_garnettii
ENSDARG00000055868	rsl1d1	89	37.467	ENSOARG00000006923	RSL1D1	57	42.391	Ovis_aries
ENSDARG00000055868	rsl1d1	68	43.874	ENSPPAG00000039716	RSL1D1	54	43.333	Pan_paniscus
ENSDARG00000055868	rsl1d1	82	38.268	ENSPPRG00000005220	RSL1D1	50	44.939	Panthera_pardus
ENSDARG00000055868	rsl1d1	84	37.778	ENSPTIG00000005526	RSL1D1	75	37.778	Panthera_tigris_altaica
ENSDARG00000055868	rsl1d1	68	43.478	ENSPTRG00000007777	RSL1D1	54	42.963	Pan_troglodytes
ENSDARG00000055868	rsl1d1	68	42.913	ENSPANG00000023073	RSL1D1	55	42.593	Papio_anubis
ENSDARG00000055868	rsl1d1	91	54.571	ENSPKIG00000022687	rsl1d1	83	57.827	Paramormyrops_kingsleyae
ENSDARG00000055868	rsl1d1	89	41.667	ENSPSIG00000011642	RSL1D1	58	50.562	Pelodiscus_sinensis
ENSDARG00000055868	rsl1d1	80	62.046	ENSPMGG00000022261	rsl1d1	100	63.036	Periophthalmus_magnuspinnatus
ENSDARG00000055868	rsl1d1	82	36.232	ENSPEMG00000009523	Rsl1d1	54	42.798	Peromyscus_maniculatus_bairdii
ENSDARG00000055868	rsl1d1	79	47.176	ENSPCIG00000026851	-	76	46.179	Phascolarctos_cinereus
ENSDARG00000055868	rsl1d1	73	59.489	ENSPFOG00000005017	rsl1d1	76	59.489	Poecilia_formosa
ENSDARG00000055868	rsl1d1	87	56.923	ENSPLAG00000000482	rsl1d1	77	57.143	Poecilia_latipinna
ENSDARG00000055868	rsl1d1	94	54.342	ENSPMEG00000007032	rsl1d1	86	58.075	Poecilia_mexicana
ENSDARG00000055868	rsl1d1	79	56.229	ENSPREG00000016619	rsl1d1	76	56.436	Poecilia_reticulata
ENSDARG00000055868	rsl1d1	74	37.906	ENSPPYG00000019335	-	63	38.112	Pongo_abelii
ENSDARG00000055868	rsl1d1	68	43.701	ENSPPYG00000007112	RSL1D1	54	43.333	Pongo_abelii
ENSDARG00000055868	rsl1d1	81	36.467	ENSPCOG00000022456	RSL1D1	69	39.273	Propithecus_coquereli
ENSDARG00000055868	rsl1d1	80	38.068	ENSPVAG00000005014	RSL1D1	57	41.544	Pteropus_vampyrus
ENSDARG00000055868	rsl1d1	80	60.129	ENSPNYG00000002850	rsl1d1	91	60.423	Pundamilia_nyererei
ENSDARG00000055868	rsl1d1	93	65.374	ENSPNAG00000011848	rsl1d1	92	67.055	Pygocentrus_nattereri
ENSDARG00000055868	rsl1d1	96	37.284	ENSRNOG00000061236	LOC108348298	52	44.490	Rattus_norvegicus
ENSDARG00000055868	rsl1d1	96	37.284	ENSRNOG00000048608	Rsl1d1l1	52	44.490	Rattus_norvegicus
ENSDARG00000055868	rsl1d1	70	42.308	ENSRBIG00000030317	RSL1D1	56	41.877	Rhinopithecus_bieti
ENSDARG00000055868	rsl1d1	70	42.308	ENSRROG00000033658	RSL1D1	56	41.877	Rhinopithecus_roxellana
ENSDARG00000055868	rsl1d1	65	43.154	ENSSBOG00000028384	-	55	41.877	Saimiri_boliviensis_boliviensis
ENSDARG00000055868	rsl1d1	65	46.473	ENSSBOG00000035910	-	56	45.126	Saimiri_boliviensis_boliviensis
ENSDARG00000055868	rsl1d1	93	53.693	ENSSFOG00015011354	rsl1d1	80	61.511	Scleropages_formosus
ENSDARG00000055868	rsl1d1	78	62.069	ENSSMAG00000007957	rsl1d1	88	61.465	Scophthalmus_maximus
ENSDARG00000055868	rsl1d1	91	59.366	ENSSDUG00000008447	rsl1d1	84	61.398	Seriola_dumerili
ENSDARG00000055868	rsl1d1	92	58.523	ENSSLDG00000008293	rsl1d1	91	61.702	Seriola_lalandi_dorsalis
ENSDARG00000055868	rsl1d1	80	49.080	ENSSPUG00000007525	RSL1D1	62	50.890	Sphenodon_punctatus
ENSDARG00000055868	rsl1d1	92	59.003	ENSSPAG00000009755	rsl1d1	91	62.170	Stegastes_partitus
ENSDARG00000055868	rsl1d1	88	36.968	ENSSSCG00000023984	RSL1D1	56	41.367	Sus_scrofa
ENSDARG00000055868	rsl1d1	65	54.357	ENSTGUG00000005174	RSL1D1	98	54.357	Taeniopygia_guttata
ENSDARG00000055868	rsl1d1	80	58.632	ENSTRUG00000016970	rsl1d1	87	58.466	Takifugu_rubripes
ENSDARG00000055868	rsl1d1	91	56.374	ENSTNIG00000012925	rsl1d1	90	59.006	Tetraodon_nigroviridis
ENSDARG00000055868	rsl1d1	85	38.398	ENSTTRG00000011629	RSL1D1	57	43.015	Tursiops_truncatus
ENSDARG00000055868	rsl1d1	85	38.571	ENSUAMG00000004470	RSL1D1	51	46.500	Ursus_americanus
ENSDARG00000055868	rsl1d1	75	34.332	ENSUMAG00000003994	RSL1D1	51	40.171	Ursus_maritimus
ENSDARG00000055868	rsl1d1	87	36.579	ENSVVUG00000018170	-	50	44.130	Vulpes_vulpes
ENSDARG00000055868	rsl1d1	91	33.249	ENSVVUG00000024962	-	51	38.645	Vulpes_vulpes
ENSDARG00000055868	rsl1d1	95	44.643	ENSXETG00000033365	-	73	47.720	Xenopus_tropicalis
ENSDARG00000055868	rsl1d1	64	70.270	ENSXCOG00000003117	rsl1d1	100	70.270	Xiphophorus_couchianus
ENSDARG00000055868	rsl1d1	66	65.714	ENSXMAG00000025111	rsl1d1	70	65.714	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000470	maturation of LSU-rRNA	21873635.	IBA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0030686	90S preribosome	21873635.	IBA	Component