EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000055889 (Gene tree)
Gene ID: 777631
Gene Symbol: zgc:153215
Alias: fe11g10|im:6907990|wu:fe11g10
Full Name: zgc:153215
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5439 bases
Position: chr16:27561114-27566552
Accession: ZDB-GENE-061103-58
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000072759	RRM_1	PF00076.22	5e-20	1	2
ENSDARP00000072759	RRM_1	PF00076.22	5e-20	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000078297	-	2902	-	ENSDARP00000072759	523 (aa)	-	F1R8L0
ENSDART00000142102	-	557	-	ENSDARP00000118499	151 (aa)	-	E9QIR6

Gene Model

Click here to download ENSDARG00000055889's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000055889's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000055889	zgc:153215	76	63.889	ENSAPOG00000008836	zgc:153215	89	63.889	Acanthochromis_polyacanthus
ENSDARG00000055889	zgc:153215	99	30.556	ENSAMEG00000007134	RBM12B	57	30.556	Ailuropoda_melanoleuca
ENSDARG00000055889	zgc:153215	98	38.536	ENSACIG00000013317	zgc:153215	99	39.114	Amphilophus_citrinellus
ENSDARG00000055889	zgc:153215	99	35.526	ENSAOCG00000010819	zgc:153215	99	36.636	Amphiprion_ocellaris
ENSDARG00000055889	zgc:153215	79	56.627	ENSAOCG00000024270	rbm12b	71	56.627	Amphiprion_ocellaris
ENSDARG00000055889	zgc:153215	79	56.627	ENSAPEG00000022079	rbm12b	62	56.627	Amphiprion_percula
ENSDARG00000055889	zgc:153215	99	30.755	ENSATEG00000004578	rbm12b	65	57.471	Anabas_testudineus
ENSDARG00000055889	zgc:153215	99	36.780	ENSATEG00000001886	zgc:153215	99	36.379	Anabas_testudineus
ENSDARG00000055889	zgc:153215	50	47.368	ENSACLG00000005578	rbm12b	57	47.368	Astatotilapia_calliptera
ENSDARG00000055889	zgc:153215	99	39.698	ENSACLG00000007675	zgc:153215	99	39.698	Astatotilapia_calliptera
ENSDARG00000055889	zgc:153215	99	41.845	ENSAMXG00000020853	zgc:153215	99	41.845	Astyanax_mexicanus
ENSDARG00000055889	zgc:153215	99	31.041	ENSCAFG00020012203	RBM12B	55	31.227	Canis_lupus_dingo
ENSDARG00000055889	zgc:153215	99	30.018	ENSCHIG00000006790	RBM12B	67	30.074	Capra_hircus
ENSDARG00000055889	zgc:153215	99	30.627	ENSCPBG00000003061	RBM12B	73	30.443	Chrysemys_picta_bellii
ENSDARG00000055889	zgc:153215	58	63.158	ENSCSEG00000001575	-	88	63.158	Cynoglossus_semilaevis
ENSDARG00000055889	zgc:153215	80	51.136	ENSCVAG00000011047	rbm12b	66	51.136	Cyprinodon_variegatus
ENSDARG00000055889	zgc:153215	82	51.579	ENSCVAG00000009259	-	94	51.579	Cyprinodon_variegatus
ENSDARG00000055889	zgc:153215	99	30.885	ENSETEG00000013005	-	65	30.597	Echinops_telfairi
ENSDARG00000055889	zgc:153215	99	30.869	ENSEASG00005016297	RBM12B	55	30.314	Equus_asinus_asinus
ENSDARG00000055889	zgc:153215	99	34.856	ENSELUG00000009039	zgc:153215	97	35.654	Esox_lucius
ENSDARG00000055889	zgc:153215	99	30.112	ENSFCAG00000029274	RBM12B	56	30.331	Felis_catus
ENSDARG00000055889	zgc:153215	99	30.057	ENSFALG00000014893	RBM12B	72	30.093	Ficedula_albicollis
ENSDARG00000055889	zgc:153215	99	32.336	ENSGMOG00000013467	rbm12b	74	32.336	Gadus_morhua
ENSDARG00000055889	zgc:153215	99	31.461	ENSGALG00000035129	RBM12B	72	30.899	Gallus_gallus
ENSDARG00000055889	zgc:153215	99	35.405	ENSGAFG00000007845	zgc:153215	99	35.272	Gambusia_affinis
ENSDARG00000055889	zgc:153215	99	31.716	ENSGAGG00000009774	RBM12B	73	31.215	Gopherus_agassizii
ENSDARG00000055889	zgc:153215	99	36.897	ENSHBUG00000016150	zgc:153215	99	36.724	Haplochromis_burtoni
ENSDARG00000055889	zgc:153215	99	46.777	ENSIPUG00000019731	zgc:153215	99	46.252	Ictalurus_punctatus
ENSDARG00000055889	zgc:153215	99	30.185	ENSSTOG00000027445	RBM12B	58	30.185	Ictidomys_tridecemlineatus
ENSDARG00000055889	zgc:153215	99	35.316	ENSKMAG00000004958	zgc:153215	99	35.316	Kryptolebias_marmoratus
ENSDARG00000055889	zgc:153215	99	39.015	ENSLBEG00000002597	zgc:153215	99	38.447	Labrus_bergylta
ENSDARG00000055889	zgc:153215	98	31.332	ENSLACG00000007177	RBM12B	74	31.450	Latimeria_chalumnae
ENSDARG00000055889	zgc:153215	98	31.262	ENSLOCG00000018344	rbm12b	74	31.262	Lepisosteus_oculatus
ENSDARG00000055889	zgc:153215	99	31.238	ENSLAFG00000029949	RBM12B	57	31.193	Loxodonta_africana
ENSDARG00000055889	zgc:153215	99	36.054	ENSMAMG00000012038	zgc:153215	99	35.884	Mastacembelus_armatus
ENSDARG00000055889	zgc:153215	99	30.812	ENSMAMG00000011998	rbm12b	65	56.322	Mastacembelus_armatus
ENSDARG00000055889	zgc:153215	99	37.500	ENSMZEG00005005435	zgc:153215	99	36.724	Maylandia_zebra
ENSDARG00000055889	zgc:153215	99	31.380	ENSMGAG00000011985	RBM12B	98	30.224	Meleagris_gallopavo
ENSDARG00000055889	zgc:153215	99	30.755	ENSMICG00000036969	RBM12B	57	30.755	Microcebus_murinus
ENSDARG00000055889	zgc:153215	79	52.326	ENSMMOG00000002404	rbm12b	67	52.326	Mola_mola
ENSDARG00000055889	zgc:153215	80	58.654	ENSMMOG00000003372	zgc:153215	92	56.731	Mola_mola
ENSDARG00000055889	zgc:153215	99	31.767	ENSMODG00000007436	RBM12B	65	31.391	Monodelphis_domestica
ENSDARG00000055889	zgc:153215	79	55.172	ENSMALG00000012059	rbm12b	66	55.172	Monopterus_albus
ENSDARG00000055889	zgc:153215	99	39.962	ENSMALG00000001222	zgc:153215	99	39.771	Monopterus_albus
ENSDARG00000055889	zgc:153215	99	30.571	ENSMUSG00000052137	Rbm12b2	58	30.571	Mus_musculus
ENSDARG00000055889	zgc:153215	99	30.571	ENSMUSG00000046667	Rbm12b1	58	30.571	Mus_musculus
ENSDARG00000055889	zgc:153215	99	30.074	MGP_SPRETEiJ_G0026765	-	53	30.074	Mus_spretus
ENSDARG00000055889	zgc:153215	99	30.074	MGP_SPRETEiJ_G0026766	-	58	30.074	Mus_spretus
ENSDARG00000055889	zgc:153215	99	36.364	ENSNBRG00000013644	zgc:153215	99	36.627	Neolamprologus_brichardi
ENSDARG00000055889	zgc:153215	79	56.977	ENSNBRG00000015057	rbm12b	65	56.977	Neolamprologus_brichardi
ENSDARG00000055889	zgc:153215	99	40.000	ENSONIG00000006054	zgc:153215	99	40.074	Oreochromis_niloticus
ENSDARG00000055889	zgc:153215	79	58.140	ENSONIG00000020612	rbm12b	65	58.140	Oreochromis_niloticus
ENSDARG00000055889	zgc:153215	80	53.409	ENSOANG00000015735	-	70	30.755	Ornithorhynchus_anatinus
ENSDARG00000055889	zgc:153215	78	56.627	ENSORLG00000008228	rbm12b	63	56.627	Oryzias_latipes
ENSDARG00000055889	zgc:153215	78	56.627	ENSORLG00020013619	rbm12b	63	56.627	Oryzias_latipes_hni
ENSDARG00000055889	zgc:153215	78	56.627	ENSORLG00015019999	rbm12b	63	56.627	Oryzias_latipes_hsok
ENSDARG00000055889	zgc:153215	79	57.500	ENSOMEG00000004220	zgc:153215	92	53.684	Oryzias_melastigma
ENSDARG00000055889	zgc:153215	99	30.669	ENSPTIG00000020071	RBM12B	56	30.370	Panthera_tigris_altaica
ENSDARG00000055889	zgc:153215	99	30.037	ENSPTRG00000020420	RBM12B	55	30.459	Pan_troglodytes
ENSDARG00000055889	zgc:153215	99	37.711	ENSPKIG00000014851	zgc:153215	99	37.333	Paramormyrops_kingsleyae
ENSDARG00000055889	zgc:153215	99	30.957	ENSPKIG00000018719	rbm12b	73	30.524	Paramormyrops_kingsleyae
ENSDARG00000055889	zgc:153215	99	31.391	ENSPCIG00000008556	RBM12B	67	31.579	Phascolarctos_cinereus
ENSDARG00000055889	zgc:153215	81	54.444	ENSPFOG00000020937	rbm12b	64	54.444	Poecilia_formosa
ENSDARG00000055889	zgc:153215	82	49.515	ENSPFOG00000017451	zgc:153215	69	49.515	Poecilia_formosa
ENSDARG00000055889	zgc:153215	77	57.353	ENSPLAG00000000232	zgc:153215	90	57.353	Poecilia_latipinna
ENSDARG00000055889	zgc:153215	78	57.895	ENSPMEG00000016662	zgc:153215	92	57.895	Poecilia_mexicana
ENSDARG00000055889	zgc:153215	82	53.191	ENSPMEG00000011418	rbm12b	67	55.682	Poecilia_mexicana
ENSDARG00000055889	zgc:153215	81	55.682	ENSPREG00000020770	rbm12b	67	55.682	Poecilia_reticulata
ENSDARG00000055889	zgc:153215	99	35.417	ENSPREG00000018608	zgc:153215	99	34.659	Poecilia_reticulata
ENSDARG00000055889	zgc:153215	87	54.737	ENSPNYG00000018125	zgc:153215	96	54.737	Pundamilia_nyererei
ENSDARG00000055889	zgc:153215	99	30.410	ENSPNAG00000008126	rbm12b	72	30.093	Pygocentrus_nattereri
ENSDARG00000055889	zgc:153215	99	47.187	ENSPNAG00000025628	zgc:153215	99	46.655	Pygocentrus_nattereri
ENSDARG00000055889	zgc:153215	99	31.579	ENSSHAG00000015335	RBM12B	67	31.767	Sarcophilus_harrisii
ENSDARG00000055889	zgc:153215	99	38.462	ENSSFOG00015009427	zgc:153215	99	38.462	Scleropages_formosus
ENSDARG00000055889	zgc:153215	99	35.714	ENSSMAG00000019013	zgc:153215	93	56.818	Scophthalmus_maximus
ENSDARG00000055889	zgc:153215	99	39.171	ENSSDUG00000012545	zgc:153215	98	39.171	Seriola_dumerili
ENSDARG00000055889	zgc:153215	99	35.424	ENSSLDG00000013581	zgc:153215	99	35.593	Seriola_lalandi_dorsalis
ENSDARG00000055889	zgc:153215	99	30.841	ENSSPUG00000016954	RBM12B	90	30.337	Sphenodon_punctatus
ENSDARG00000055889	zgc:153215	88	50.000	ENSSPAG00000023584	zgc:153215	98	50.000	Stegastes_partitus
ENSDARG00000055889	zgc:153215	79	55.422	ENSSPAG00000006774	rbm12b	65	55.422	Stegastes_partitus
ENSDARG00000055889	zgc:153215	99	30.018	ENSSSCG00000006110	RBM12B	56	30.165	Sus_scrofa
ENSDARG00000055889	zgc:153215	81	53.684	ENSTRUG00000013738	rbm12b	74	30.075	Takifugu_rubripes
ENSDARG00000055889	zgc:153215	79	35.084	ENSTNIG00000018374	-	99	35.322	Tetraodon_nigroviridis
ENSDARG00000055889	zgc:153215	99	30.970	ENSTBEG00000000449	RBM12B	62	30.939	Tupaia_belangeri
ENSDARG00000055889	zgc:153215	99	30.798	ENSUAMG00000023639	RBM12B	55	30.798	Ursus_americanus
ENSDARG00000055889	zgc:153215	99	30.926	ENSUMAG00000016008	RBM12B	52	30.926	Ursus_maritimus
ENSDARG00000055889	zgc:153215	99	31.041	ENSVVUG00000002694	RBM12B	55	31.227	Vulpes_vulpes
ENSDARG00000055889	zgc:153215	84	54.878	ENSXETG00000014696	rbm12b	67	54.878	Xenopus_tropicalis
ENSDARG00000055889	zgc:153215	79	56.627	ENSXETG00000014694	rbm12b	93	56.627	Xenopus_tropicalis
ENSDARG00000055889	zgc:153215	83	33.721	ENSXETG00000025920	-	97	31.624	Xenopus_tropicalis
ENSDARG00000055889	zgc:153215	99	35.970	ENSXCOG00000019654	zgc:153215	98	35.405	Xiphophorus_couchianus
ENSDARG00000055889	zgc:153215	76	42.718	ENSXMAG00000013169	-	97	42.308	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process