EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000056138 (Gene tree)
Gene ID: 446117
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 15495 bases
Position: chr9:32161623-32177117
Accession: ZDB-GENE-040827-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000073029	SF3b1	PF08920.10	9.1e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000141105	-	649	-	-	- (aa)	-	-
ENSDART00000078568	-	4644	XM_005167787	ENSDARP00000073029	1315 (aa)	XP_005167844	F1QQZ1

Gene Model

Click here to download ENSDARG00000056138's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000056138's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000056138	sf3b1	100	93.394	ENSG00000115524	SF3B1	100	93.470	Homo_sapiens
ENSDARG00000056138	sf3b1	100	95.821	ENSAPOG00000011894	sf3b1	100	95.821	Acanthochromis_polyacanthus
ENSDARG00000056138	sf3b1	99	93.430	ENSAMEG00000013809	SF3B1	99	93.506	Ailuropoda_melanoleuca
ENSDARG00000056138	sf3b1	100	94.677	ENSACIG00000020910	sf3b1	97	94.677	Amphilophus_citrinellus
ENSDARG00000056138	sf3b1	100	95.669	ENSAOCG00000004478	sf3b1	100	95.669	Amphiprion_ocellaris
ENSDARG00000056138	sf3b1	100	95.669	ENSAPEG00000012937	sf3b1	100	95.669	Amphiprion_percula
ENSDARG00000056138	sf3b1	100	96.046	ENSATEG00000020435	sf3b1	100	96.046	Anabas_testudineus
ENSDARG00000056138	sf3b1	99	93.798	ENSAPLG00000003993	SF3B1	99	93.798	Anas_platyrhynchos
ENSDARG00000056138	sf3b1	100	93.465	ENSACAG00000009612	SF3B1	100	93.465	Anolis_carolinensis
ENSDARG00000056138	sf3b1	100	93.394	ENSANAG00000021577	SF3B1	100	94.949	Aotus_nancymaae
ENSDARG00000056138	sf3b1	100	94.525	ENSACLG00000023470	sf3b1	100	94.525	Astatotilapia_calliptera
ENSDARG00000056138	sf3b1	100	97.115	ENSAMXG00000002219	sf3b1	100	97.115	Astyanax_mexicanus
ENSDARG00000056138	sf3b1	100	93.394	ENSBTAG00000008915	SF3B1	100	93.470	Bos_taurus
ENSDARG00000056138	sf3b1	98	66.067	WBGene00011605	sftb-1	98	65.693	Caenorhabditis_elegans
ENSDARG00000056138	sf3b1	100	93.394	ENSCJAG00000003902	SF3B1	100	93.470	Callithrix_jacchus
ENSDARG00000056138	sf3b1	100	93.394	ENSCAFG00000010826	SF3B1	100	93.470	Canis_familiaris
ENSDARG00000056138	sf3b1	100	93.394	ENSCAFG00020004750	SF3B1	100	93.470	Canis_lupus_dingo
ENSDARG00000056138	sf3b1	100	93.394	ENSCHIG00000015226	SF3B1	100	93.470	Capra_hircus
ENSDARG00000056138	sf3b1	100	93.318	ENSTSYG00000009214	SF3B1	100	93.394	Carlito_syrichta
ENSDARG00000056138	sf3b1	99	93.298	ENSCAPG00000006547	SF3B1	99	93.374	Cavia_aperea
ENSDARG00000056138	sf3b1	99	93.497	ENSCPOG00000009353	SF3B1	100	93.573	Cavia_porcellus
ENSDARG00000056138	sf3b1	100	93.394	ENSCCAG00000020506	SF3B1	100	93.470	Cebus_capucinus
ENSDARG00000056138	sf3b1	100	93.394	ENSCATG00000035735	SF3B1	100	93.470	Cercocebus_atys
ENSDARG00000056138	sf3b1	99	93.502	ENSCLAG00000014767	SF3B1	99	93.578	Chinchilla_lanigera
ENSDARG00000056138	sf3b1	100	93.394	ENSCSAG00000011505	SF3B1	100	93.470	Chlorocebus_sabaeus
ENSDARG00000056138	sf3b1	76	92.588	ENSCHOG00000009860	SF3B1	76	92.588	Choloepus_hoffmanni
ENSDARG00000056138	sf3b1	100	93.764	ENSCPBG00000021902	SF3B1	99	95.034	Chrysemys_picta_bellii
ENSDARG00000056138	sf3b1	69	77.838	ENSCING00000002558	-	99	78.453	Ciona_intestinalis
ENSDARG00000056138	sf3b1	99	79.758	ENSCSAVG00000002559	-	99	79.758	Ciona_savignyi
ENSDARG00000056138	sf3b1	100	93.394	ENSCANG00000029415	SF3B1	100	93.470	Colobus_angolensis_palliatus
ENSDARG00000056138	sf3b1	100	93.394	ENSCGRG00001016990	Sf3b1	100	93.470	Cricetulus_griseus_chok1gshd
ENSDARG00000056138	sf3b1	100	93.394	ENSCGRG00000005301	Sf3b1	100	93.470	Cricetulus_griseus_crigri
ENSDARG00000056138	sf3b1	100	91.711	ENSCSEG00000003860	sf3b1	100	91.711	Cynoglossus_semilaevis
ENSDARG00000056138	sf3b1	96	96.200	ENSCVAG00000003680	sf3b1	99	96.200	Cyprinodon_variegatus
ENSDARG00000056138	sf3b1	100	93.323	ENSDNOG00000011754	SF3B1	100	93.399	Dasypus_novemcinctus
ENSDARG00000056138	sf3b1	99	91.584	ENSDORG00000002399	Sf3b1	100	91.507	Dipodomys_ordii
ENSDARG00000056138	sf3b1	100	75.587	FBgn0031266	Sf3b1	100	75.587	Drosophila_melanogaster
ENSDARG00000056138	sf3b1	83	92.301	ENSETEG00000009188	SF3B1	100	92.392	Echinops_telfairi
ENSDARG00000056138	sf3b1	99	85.736	ENSEBUG00000004325	sf3b1	100	88.448	Eptatretus_burgeri
ENSDARG00000056138	sf3b1	100	93.394	ENSEASG00005020159	SF3B1	98	93.470	Equus_asinus_asinus
ENSDARG00000056138	sf3b1	100	93.394	ENSECAG00000021657	SF3B1	98	93.470	Equus_caballus
ENSDARG00000056138	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSDARG00000056138	sf3b1	100	95.619	ENSELUG00000005977	sf3b1	98	95.619	Esox_lucius
ENSDARG00000056138	sf3b1	100	93.394	ENSFCAG00000005038	SF3B1	100	93.470	Felis_catus
ENSDARG00000056138	sf3b1	99	93.721	ENSFALG00000004281	SF3B1	99	93.721	Ficedula_albicollis
ENSDARG00000056138	sf3b1	100	93.394	ENSFDAG00000017510	SF3B1	100	93.470	Fukomys_damarensis
ENSDARG00000056138	sf3b1	100	95.285	ENSFHEG00000014333	sf3b1	100	95.285	Fundulus_heteroclitus
ENSDARG00000056138	sf3b1	100	94.765	ENSGMOG00000006773	sf3b1	100	95.144	Gadus_morhua
ENSDARG00000056138	sf3b1	100	93.688	ENSGALG00000008038	SF3B1	100	93.688	Gallus_gallus
ENSDARG00000056138	sf3b1	98	96.291	ENSGAFG00000000704	sf3b1	99	96.291	Gambusia_affinis
ENSDARG00000056138	sf3b1	100	95.520	ENSGACG00000008839	sf3b1	100	95.520	Gasterosteus_aculeatus
ENSDARG00000056138	sf3b1	100	93.127	ENSGAGG00000017478	SF3B1	100	93.127	Gopherus_agassizii
ENSDARG00000056138	sf3b1	99	88.379	ENSGGOG00000009264	SF3B1	99	88.456	Gorilla_gorilla
ENSDARG00000056138	sf3b1	99	94.593	ENSHBUG00000007705	sf3b1	99	94.593	Haplochromis_burtoni
ENSDARG00000056138	sf3b1	99	93.502	ENSHGLG00000008285	-	99	93.578	Heterocephalus_glaber_female
ENSDARG00000056138	sf3b1	99	91.514	ENSHGLG00100005535	-	99	91.590	Heterocephalus_glaber_male
ENSDARG00000056138	sf3b1	100	95.159	ENSHCOG00000016775	sf3b1	100	95.159	Hippocampus_comes
ENSDARG00000056138	sf3b1	100	96.809	ENSIPUG00000013171	sf3b1	100	96.809	Ictalurus_punctatus
ENSDARG00000056138	sf3b1	100	93.394	ENSSTOG00000011034	SF3B1	100	93.470	Ictidomys_tridecemlineatus
ENSDARG00000056138	sf3b1	99	93.553	ENSJJAG00000010903	Sf3b1	99	93.630	Jaculus_jaculus
ENSDARG00000056138	sf3b1	100	95.375	ENSKMAG00000004009	sf3b1	100	95.375	Kryptolebias_marmoratus
ENSDARG00000056138	sf3b1	100	95.361	ENSLBEG00000022208	sf3b1	100	95.361	Labrus_bergylta
ENSDARG00000056138	sf3b1	99	89.728	ENSLACG00000014832	SF3B1	99	89.653	Latimeria_chalumnae
ENSDARG00000056138	sf3b1	100	95.083	ENSLOCG00000003899	sf3b1	100	95.083	Lepisosteus_oculatus
ENSDARG00000056138	sf3b1	100	93.394	ENSLAFG00000001956	SF3B1	100	93.470	Loxodonta_africana
ENSDARG00000056138	sf3b1	99	93.502	ENSMMUG00000022430	SF3B1	99	93.578	Macaca_mulatta
ENSDARG00000056138	sf3b1	100	93.394	ENSMNEG00000042333	SF3B1	100	94.949	Macaca_nemestrina
ENSDARG00000056138	sf3b1	94	88.691	ENSMLEG00000026141	SF3B1	98	89.202	Mandrillus_leucophaeus
ENSDARG00000056138	sf3b1	100	95.665	ENSMAMG00000010241	sf3b1	100	95.665	Mastacembelus_armatus
ENSDARG00000056138	sf3b1	100	94.525	ENSMZEG00005021254	sf3b1	100	94.525	Maylandia_zebra
ENSDARG00000056138	sf3b1	99	93.185	ENSMGAG00000007017	SF3B1	99	93.185	Meleagris_gallopavo
ENSDARG00000056138	sf3b1	99	89.297	ENSMAUG00000009071	Sf3b1	99	89.373	Mesocricetus_auratus
ENSDARG00000056138	sf3b1	100	93.318	ENSMICG00000013879	SF3B1	100	93.394	Microcebus_murinus
ENSDARG00000056138	sf3b1	99	89.297	ENSMOCG00000000455	Sf3b1	99	89.297	Microtus_ochrogaster
ENSDARG00000056138	sf3b1	84	95.091	ENSMMOG00000000475	sf3b1	100	95.091	Mola_mola
ENSDARG00000056138	sf3b1	100	92.938	ENSMODG00000012275	SF3B1	100	93.014	Monodelphis_domestica
ENSDARG00000056138	sf3b1	100	95.741	ENSMALG00000017211	sf3b1	100	95.741	Monopterus_albus
ENSDARG00000056138	sf3b1	100	93.394	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.470	Mus_caroli
ENSDARG00000056138	sf3b1	100	93.394	ENSMUSG00000025982	Sf3b1	100	93.470	Mus_musculus
ENSDARG00000056138	sf3b1	100	93.394	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.470	Mus_spretus
ENSDARG00000056138	sf3b1	100	93.394	ENSMPUG00000007799	SF3B1	100	93.470	Mustela_putorius_furo
ENSDARG00000056138	sf3b1	100	92.255	ENSMLUG00000000840	SF3B1	100	92.331	Myotis_lucifugus
ENSDARG00000056138	sf3b1	99	93.497	ENSNGAG00000021884	-	99	93.573	Nannospalax_galili
ENSDARG00000056138	sf3b1	100	90.364	ENSNBRG00000015816	sf3b1	100	90.426	Neolamprologus_brichardi
ENSDARG00000056138	sf3b1	100	93.394	ENSNLEG00000006861	SF3B1	100	93.470	Nomascus_leucogenys
ENSDARG00000056138	sf3b1	69	99.433	ENSMEUG00000015848	-	66	99.433	Notamacropus_eugenii
ENSDARG00000056138	sf3b1	100	80.758	ENSOPRG00000008596	SF3B1	100	81.805	Ochotona_princeps
ENSDARG00000056138	sf3b1	100	93.394	ENSODEG00000011153	-	100	93.470	Octodon_degus
ENSDARG00000056138	sf3b1	100	94.525	ENSONIG00000013758	sf3b1	100	94.525	Oreochromis_niloticus
ENSDARG00000056138	sf3b1	83	95.692	ENSOCUG00000012722	-	96	95.692	Oryctolagus_cuniculus
ENSDARG00000056138	sf3b1	100	95.361	ENSORLG00000020219	sf3b1	100	95.361	Oryzias_latipes
ENSDARG00000056138	sf3b1	100	95.361	ENSORLG00020001746	sf3b1	100	95.361	Oryzias_latipes_hni
ENSDARG00000056138	sf3b1	64	93.128	ENSORLG00015001759	sf3b1	98	93.128	Oryzias_latipes_hsok
ENSDARG00000056138	sf3b1	100	95.513	ENSOMEG00000019231	sf3b1	100	95.513	Oryzias_melastigma
ENSDARG00000056138	sf3b1	100	93.394	ENSOARG00000015374	SF3B1	100	93.470	Ovis_aries
ENSDARG00000056138	sf3b1	100	93.394	ENSPPAG00000035007	SF3B1	100	93.470	Pan_paniscus
ENSDARG00000056138	sf3b1	100	93.394	ENSPPRG00000009090	SF3B1	100	93.470	Panthera_pardus
ENSDARG00000056138	sf3b1	100	93.394	ENSPTIG00000021557	SF3B1	100	93.470	Panthera_tigris_altaica
ENSDARG00000056138	sf3b1	99	86.346	ENSPTRG00000012771	SF3B1	99	86.423	Pan_troglodytes
ENSDARG00000056138	sf3b1	100	93.394	ENSPANG00000013417	SF3B1	100	93.470	Papio_anubis
ENSDARG00000056138	sf3b1	100	96.055	ENSPKIG00000000784	sf3b1	100	96.055	Paramormyrops_kingsleyae
ENSDARG00000056138	sf3b1	99	92.720	ENSPSIG00000017222	SF3B1	98	92.720	Pelodiscus_sinensis
ENSDARG00000056138	sf3b1	91	95.718	ENSPMGG00000004330	sf3b1	99	95.718	Periophthalmus_magnuspinnatus
ENSDARG00000056138	sf3b1	99	93.502	ENSPEMG00000010699	Sf3b1	100	93.578	Peromyscus_maniculatus_bairdii
ENSDARG00000056138	sf3b1	100	88.813	ENSPMAG00000001311	sf3b1	100	89.116	Petromyzon_marinus
ENSDARG00000056138	sf3b1	100	93.014	ENSPCIG00000010642	SF3B1	100	93.090	Phascolarctos_cinereus
ENSDARG00000056138	sf3b1	100	96.049	ENSPFOG00000000073	sf3b1	100	96.049	Poecilia_formosa
ENSDARG00000056138	sf3b1	100	96.122	ENSPLAG00000002293	sf3b1	100	96.122	Poecilia_latipinna
ENSDARG00000056138	sf3b1	100	96.122	ENSPMEG00000000446	sf3b1	98	96.122	Poecilia_mexicana
ENSDARG00000056138	sf3b1	100	96.122	ENSPREG00000019652	sf3b1	100	96.122	Poecilia_reticulata
ENSDARG00000056138	sf3b1	100	97.045	ENSPPYG00000013044	SF3B1	100	97.045	Pongo_abelii
ENSDARG00000056138	sf3b1	100	93.242	ENSPCAG00000009292	SF3B1	100	93.318	Procavia_capensis
ENSDARG00000056138	sf3b1	100	93.318	ENSPCOG00000024074	SF3B1	100	93.394	Propithecus_coquereli
ENSDARG00000056138	sf3b1	100	93.394	ENSPVAG00000008302	SF3B1	100	93.470	Pteropus_vampyrus
ENSDARG00000056138	sf3b1	100	94.525	ENSPNYG00000014939	sf3b1	100	94.525	Pundamilia_nyererei
ENSDARG00000056138	sf3b1	100	97.267	ENSPNAG00000008288	sf3b1	100	97.267	Pygocentrus_nattereri
ENSDARG00000056138	sf3b1	100	93.394	ENSRNOG00000013516	Sf3b1	100	93.470	Rattus_norvegicus
ENSDARG00000056138	sf3b1	99	89.810	ENSRBIG00000026096	SF3B1	100	89.886	Rhinopithecus_bieti
ENSDARG00000056138	sf3b1	100	93.394	ENSRROG00000031308	SF3B1	100	93.470	Rhinopithecus_roxellana
ENSDARG00000056138	sf3b1	100	93.394	ENSSBOG00000020080	SF3B1	100	93.470	Saimiri_boliviensis_boliviensis
ENSDARG00000056138	sf3b1	100	92.938	ENSSHAG00000017564	SF3B1	100	93.014	Sarcophilus_harrisii
ENSDARG00000056138	sf3b1	100	96.353	ENSSFOG00015021535	sf3b1	100	96.353	Scleropages_formosus
ENSDARG00000056138	sf3b1	99	95.296	ENSSMAG00000013977	sf3b1	99	95.372	Scophthalmus_maximus
ENSDARG00000056138	sf3b1	100	95.741	ENSSDUG00000017422	sf3b1	100	95.741	Seriola_dumerili
ENSDARG00000056138	sf3b1	100	95.817	ENSSLDG00000019495	sf3b1	100	95.817	Seriola_lalandi_dorsalis
ENSDARG00000056138	sf3b1	75	98.592	ENSSARG00000007016	SF3B1	75	98.592	Sorex_araneus
ENSDARG00000056138	sf3b1	100	93.612	ENSSPUG00000000410	SF3B1	100	93.612	Sphenodon_punctatus
ENSDARG00000056138	sf3b1	100	95.741	ENSSPAG00000010451	sf3b1	99	95.741	Stegastes_partitus
ENSDARG00000056138	sf3b1	89	94.949	ENSSSCG00000016075	SF3B1	100	94.949	Sus_scrofa
ENSDARG00000056138	sf3b1	100	93.688	ENSTGUG00000010553	SF3B1	100	93.688	Taeniopygia_guttata
ENSDARG00000056138	sf3b1	100	96.198	ENSTRUG00000015534	sf3b1	100	96.198	Takifugu_rubripes
ENSDARG00000056138	sf3b1	88	97.211	ENSTBEG00000008714	SF3B1	93	97.211	Tupaia_belangeri
ENSDARG00000056138	sf3b1	92	93.173	ENSTTRG00000003414	SF3B1	92	93.173	Tursiops_truncatus
ENSDARG00000056138	sf3b1	94	83.766	ENSUAMG00000018506	SF3B1	99	97.773	Ursus_americanus
ENSDARG00000056138	sf3b1	100	93.394	ENSUMAG00000020945	SF3B1	100	93.470	Ursus_maritimus
ENSDARG00000056138	sf3b1	95	93.463	ENSVPAG00000005798	SF3B1	96	93.463	Vicugna_pacos
ENSDARG00000056138	sf3b1	100	93.394	ENSVVUG00000025948	SF3B1	95	93.470	Vulpes_vulpes
ENSDARG00000056138	sf3b1	100	91.951	ENSXETG00000013339	sf3b1	100	91.875	Xenopus_tropicalis
ENSDARG00000056138	sf3b1	100	91.787	ENSXCOG00000018086	sf3b1	100	92.091	Xiphophorus_couchianus
ENSDARG00000056138	sf3b1	100	96.274	ENSXMAG00000007369	sf3b1	100	96.274	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	-	IEA	Process
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0014032	neural crest cell development	22562198.	IMP	Process
GO:0030318	melanocyte differentiation	22562198.	IGI	Process
GO:0030318	melanocyte differentiation	22562198.	IMP	Process
GO:0042981	regulation of apoptotic process	22562198.	IGI	Process
GO:0060216	definitive hemopoiesis	27260753.	IMP	Process
GO:0060218	hematopoietic stem cell differentiation	27260753.	IMP	Process
GO:0061515	myeloid cell development	27260753.	IMP	Process
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component