EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000056235 (Gene tree)
Gene ID: 572679
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6236 bases
Position: chr17:20237727-20243962
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000038215	SMN	PF06003.12	4.9e-16	1	1
ENSDARP00000146987	SMN	PF06003.12	4.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000031547	-	1440	-	ENSDARP00000038215	237 (aa)	-	Q7ZV80
ENSDART00000180115	-	2152	-	ENSDARP00000146987	237 (aa)	-	Q7ZV80

Gene Model

Click here to download ENSDARG00000056235's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000056235's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000056235	smndc1	100	78.992	ENSG00000119953	SMNDC1	100	78.992	Homo_sapiens
ENSDARG00000056235	smndc1	100	84.100	ENSAPOG00000021772	smndc1	100	84.100	Acanthochromis_polyacanthus
ENSDARG00000056235	smndc1	100	78.992	ENSAMEG00000005251	SMNDC1	100	78.992	Ailuropoda_melanoleuca
ENSDARG00000056235	smndc1	100	83.682	ENSACIG00000004819	smndc1	100	83.682	Amphilophus_citrinellus
ENSDARG00000056235	smndc1	100	82.845	ENSAOCG00000017869	smndc1	100	82.845	Amphiprion_ocellaris
ENSDARG00000056235	smndc1	100	82.845	ENSAPEG00000007752	smndc1	100	82.845	Amphiprion_percula
ENSDARG00000056235	smndc1	100	85.356	ENSATEG00000006830	smndc1	100	85.356	Anabas_testudineus
ENSDARG00000056235	smndc1	83	79.798	ENSAPLG00000004322	SMNDC1	100	79.798	Anas_platyrhynchos
ENSDARG00000056235	smndc1	100	79.832	ENSACAG00000005983	SMNDC1	100	79.832	Anolis_carolinensis
ENSDARG00000056235	smndc1	100	78.992	ENSANAG00000032875	SMNDC1	100	78.992	Aotus_nancymaae
ENSDARG00000056235	smndc1	100	82.845	ENSACLG00000016360	smndc1	100	82.845	Astatotilapia_calliptera
ENSDARG00000056235	smndc1	100	81.435	ENSAMXG00000020310	smndc1	100	81.435	Astyanax_mexicanus
ENSDARG00000056235	smndc1	100	78.571	ENSBTAG00000000551	SMNDC1	100	78.571	Bos_taurus
ENSDARG00000056235	smndc1	100	78.992	ENSCJAG00000018624	SMNDC1	100	78.992	Callithrix_jacchus
ENSDARG00000056235	smndc1	100	78.992	ENSCAFG00000010720	SMNDC1	100	78.992	Canis_familiaris
ENSDARG00000056235	smndc1	100	78.992	ENSCAFG00020011913	SMNDC1	100	78.992	Canis_lupus_dingo
ENSDARG00000056235	smndc1	100	78.571	ENSCHIG00000010604	SMNDC1	100	78.571	Capra_hircus
ENSDARG00000056235	smndc1	100	78.992	ENSTSYG00000026454	SMNDC1	100	78.992	Carlito_syrichta
ENSDARG00000056235	smndc1	100	65.833	ENSCAPG00000009132	SMNDC1	100	76.617	Cavia_aperea
ENSDARG00000056235	smndc1	100	79.412	ENSCPOG00000031666	SMNDC1	100	79.412	Cavia_porcellus
ENSDARG00000056235	smndc1	100	78.992	ENSCCAG00000021793	SMNDC1	100	78.992	Cebus_capucinus
ENSDARG00000056235	smndc1	100	78.571	ENSCATG00000035910	SMNDC1	100	78.571	Cercocebus_atys
ENSDARG00000056235	smndc1	100	79.412	ENSCLAG00000002838	SMNDC1	100	79.412	Chinchilla_lanigera
ENSDARG00000056235	smndc1	100	78.992	ENSCSAG00000005169	SMNDC1	100	78.992	Chlorocebus_sabaeus
ENSDARG00000056235	smndc1	81	74.611	ENSCHOG00000002936	SMNDC1	100	74.611	Choloepus_hoffmanni
ENSDARG00000056235	smndc1	100	79.832	ENSCPBG00000012837	SMNDC1	100	79.832	Chrysemys_picta_bellii
ENSDARG00000056235	smndc1	100	59.916	ENSCANG00000036994	-	100	59.916	Colobus_angolensis_palliatus
ENSDARG00000056235	smndc1	100	72.689	ENSCANG00000034620	-	100	72.689	Colobus_angolensis_palliatus
ENSDARG00000056235	smndc1	100	78.992	ENSCANG00000031720	-	100	78.992	Colobus_angolensis_palliatus
ENSDARG00000056235	smndc1	100	78.992	ENSCGRG00001012973	Smndc1	100	78.992	Cricetulus_griseus_chok1gshd
ENSDARG00000056235	smndc1	100	78.992	ENSCGRG00000012396	Smndc1	100	78.992	Cricetulus_griseus_crigri
ENSDARG00000056235	smndc1	100	80.169	ENSCSEG00000015621	smndc1	100	80.169	Cynoglossus_semilaevis
ENSDARG00000056235	smndc1	100	82.008	ENSCVAG00000020432	smndc1	100	82.008	Cyprinodon_variegatus
ENSDARG00000056235	smndc1	100	78.992	ENSDNOG00000016387	SMNDC1	83	78.992	Dasypus_novemcinctus
ENSDARG00000056235	smndc1	100	78.992	ENSDORG00000023715	Smndc1	100	78.992	Dipodomys_ordii
ENSDARG00000056235	smndc1	93	41.803	FBgn0039977	CG17454	97	43.443	Drosophila_melanogaster
ENSDARG00000056235	smndc1	100	68.880	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSDARG00000056235	smndc1	100	78.992	ENSEASG00005014930	SMNDC1	100	78.992	Equus_asinus_asinus
ENSDARG00000056235	smndc1	100	78.992	ENSECAG00000029973	SMNDC1	100	78.992	Equus_caballus
ENSDARG00000056235	smndc1	60	86.458	ENSEEUG00000013407	-	72	86.458	Erinaceus_europaeus
ENSDARG00000056235	smndc1	100	81.857	ENSELUG00000000227	smndc1	100	81.857	Esox_lucius
ENSDARG00000056235	smndc1	100	78.992	ENSFCAG00000027353	SMNDC1	100	78.992	Felis_catus
ENSDARG00000056235	smndc1	100	79.832	ENSFALG00000002306	SMNDC1	100	79.832	Ficedula_albicollis
ENSDARG00000056235	smndc1	100	79.412	ENSFDAG00000006468	SMNDC1	100	79.412	Fukomys_damarensis
ENSDARG00000056235	smndc1	100	82.427	ENSFHEG00000020150	smndc1	100	82.427	Fundulus_heteroclitus
ENSDARG00000056235	smndc1	100	81.857	ENSGMOG00000016585	smndc1	100	81.857	Gadus_morhua
ENSDARG00000056235	smndc1	100	79.832	ENSGALG00000008561	SMNDC1	100	79.832	Gallus_gallus
ENSDARG00000056235	smndc1	100	81.590	ENSGAFG00000011582	smndc1	100	81.590	Gambusia_affinis
ENSDARG00000056235	smndc1	100	81.590	ENSGACG00000009468	smndc1	100	81.590	Gasterosteus_aculeatus
ENSDARG00000056235	smndc1	100	79.832	ENSGAGG00000024547	SMNDC1	100	79.832	Gopherus_agassizii
ENSDARG00000056235	smndc1	100	78.992	ENSGGOG00000010071	SMNDC1	100	78.992	Gorilla_gorilla
ENSDARG00000056235	smndc1	100	82.845	ENSHBUG00000017596	smndc1	100	82.845	Haplochromis_burtoni
ENSDARG00000056235	smndc1	100	56.379	ENSHGLG00000001157	-	100	56.379	Heterocephalus_glaber_female
ENSDARG00000056235	smndc1	100	79.412	ENSHGLG00000013390	-	100	79.412	Heterocephalus_glaber_female
ENSDARG00000056235	smndc1	100	61.885	ENSHGLG00100004278	-	100	60.887	Heterocephalus_glaber_male
ENSDARG00000056235	smndc1	100	79.412	ENSHGLG00100004814	-	100	79.412	Heterocephalus_glaber_male
ENSDARG00000056235	smndc1	100	77.824	ENSHCOG00000000783	smndc1	100	77.824	Hippocampus_comes
ENSDARG00000056235	smndc1	100	85.654	ENSIPUG00000004217	smndc1	100	85.654	Ictalurus_punctatus
ENSDARG00000056235	smndc1	100	78.992	ENSSTOG00000006088	SMNDC1	100	78.992	Ictidomys_tridecemlineatus
ENSDARG00000056235	smndc1	100	79.412	ENSJJAG00000019974	Smndc1	100	79.412	Jaculus_jaculus
ENSDARG00000056235	smndc1	100	81.590	ENSKMAG00000020134	smndc1	100	81.590	Kryptolebias_marmoratus
ENSDARG00000056235	smndc1	100	80.591	ENSLBEG00000004598	smndc1	100	80.591	Labrus_bergylta
ENSDARG00000056235	smndc1	100	78.992	ENSLACG00000007784	SMNDC1	100	78.992	Latimeria_chalumnae
ENSDARG00000056235	smndc1	100	81.013	ENSLOCG00000012355	smndc1	100	81.013	Lepisosteus_oculatus
ENSDARG00000056235	smndc1	100	78.992	ENSLAFG00000014353	SMNDC1	100	78.992	Loxodonta_africana
ENSDARG00000056235	smndc1	100	64.135	ENSMFAG00000038381	-	100	64.135	Macaca_fascicularis
ENSDARG00000056235	smndc1	100	78.992	ENSMFAG00000002433	-	100	78.992	Macaca_fascicularis
ENSDARG00000056235	smndc1	100	64.135	ENSMMUG00000045875	-	100	64.135	Macaca_mulatta
ENSDARG00000056235	smndc1	100	78.992	ENSMMUG00000007775	SMNDC1	100	78.992	Macaca_mulatta
ENSDARG00000056235	smndc1	100	78.992	ENSMNEG00000042963	-	100	78.992	Macaca_nemestrina
ENSDARG00000056235	smndc1	100	69.328	ENSMNEG00000033853	-	100	69.328	Macaca_nemestrina
ENSDARG00000056235	smndc1	100	74.477	ENSMLEG00000040236	SMNDC1	100	73.109	Mandrillus_leucophaeus
ENSDARG00000056235	smndc1	89	79.439	ENSMAMG00000018233	smndc1	87	79.439	Mastacembelus_armatus
ENSDARG00000056235	smndc1	100	82.845	ENSMZEG00005027510	smndc1	100	82.845	Maylandia_zebra
ENSDARG00000056235	smndc1	92	76.147	ENSMGAG00000010777	SMNDC1	92	76.147	Meleagris_gallopavo
ENSDARG00000056235	smndc1	100	78.992	ENSMAUG00000012243	-	100	78.992	Mesocricetus_auratus
ENSDARG00000056235	smndc1	99	64.407	ENSMAUG00000005459	-	93	65.401	Mesocricetus_auratus
ENSDARG00000056235	smndc1	100	79.412	ENSMICG00000027336	-	100	79.412	Microcebus_murinus
ENSDARG00000056235	smndc1	100	67.932	ENSMICG00000031640	-	100	67.932	Microcebus_murinus
ENSDARG00000056235	smndc1	100	78.571	ENSMOCG00000002458	Smndc1	100	78.571	Microtus_ochrogaster
ENSDARG00000056235	smndc1	100	80.252	ENSMMOG00000008856	smndc1	100	80.252	Mola_mola
ENSDARG00000056235	smndc1	100	78.992	ENSMODG00000010542	SMNDC1	100	78.992	Monodelphis_domestica
ENSDARG00000056235	smndc1	100	83.264	ENSMALG00000017598	smndc1	100	83.264	Monopterus_albus
ENSDARG00000056235	smndc1	100	78.992	MGP_CAROLIEiJ_G0023072	Smndc1	100	78.992	Mus_caroli
ENSDARG00000056235	smndc1	100	78.571	ENSMUSG00000025024	Smndc1	100	78.571	Mus_musculus
ENSDARG00000056235	smndc1	100	78.571	MGP_PahariEiJ_G0014560	Smndc1	100	78.571	Mus_pahari
ENSDARG00000056235	smndc1	100	78.571	MGP_SPRETEiJ_G0023993	Smndc1	100	78.571	Mus_spretus
ENSDARG00000056235	smndc1	100	78.992	ENSMPUG00000002089	SMNDC1	100	78.992	Mustela_putorius_furo
ENSDARG00000056235	smndc1	100	78.571	ENSMLUG00000016007	SMNDC1	100	78.571	Myotis_lucifugus
ENSDARG00000056235	smndc1	100	79.412	ENSNGAG00000006833	Smndc1	100	79.412	Nannospalax_galili
ENSDARG00000056235	smndc1	100	82.845	ENSNBRG00000017089	smndc1	100	82.845	Neolamprologus_brichardi
ENSDARG00000056235	smndc1	100	78.992	ENSNLEG00000015471	SMNDC1	100	78.992	Nomascus_leucogenys
ENSDARG00000056235	smndc1	82	54.774	ENSMEUG00000010120	-	100	54.500	Notamacropus_eugenii
ENSDARG00000056235	smndc1	100	79.412	ENSOPRG00000015348	SMNDC1	100	79.412	Ochotona_princeps
ENSDARG00000056235	smndc1	100	56.962	ENSODEG00000007594	-	100	54.852	Octodon_degus
ENSDARG00000056235	smndc1	100	82.845	ENSONIG00000000434	smndc1	100	82.845	Oreochromis_niloticus
ENSDARG00000056235	smndc1	100	80.252	ENSOANG00000001598	SMNDC1	100	80.252	Ornithorhynchus_anatinus
ENSDARG00000056235	smndc1	100	56.540	ENSOCUG00000012274	-	100	59.072	Oryctolagus_cuniculus
ENSDARG00000056235	smndc1	100	78.992	ENSOCUG00000008145	-	100	78.992	Oryctolagus_cuniculus
ENSDARG00000056235	smndc1	100	79.412	ENSORLG00000005934	smndc1	95	79.412	Oryzias_latipes
ENSDARG00000056235	smndc1	100	79.412	ENSORLG00020008796	smndc1	95	79.412	Oryzias_latipes_hni
ENSDARG00000056235	smndc1	100	79.412	ENSORLG00015013666	smndc1	100	79.412	Oryzias_latipes_hsok
ENSDARG00000056235	smndc1	100	78.903	ENSOMEG00000007590	smndc1	100	78.903	Oryzias_melastigma
ENSDARG00000056235	smndc1	100	78.571	ENSOGAG00000000571	SMNDC1	100	78.571	Otolemur_garnettii
ENSDARG00000056235	smndc1	100	78.571	ENSOARG00000009500	SMNDC1	100	78.571	Ovis_aries
ENSDARG00000056235	smndc1	100	78.992	ENSPPAG00000027815	SMNDC1	100	78.992	Pan_paniscus
ENSDARG00000056235	smndc1	100	78.992	ENSPPRG00000013749	SMNDC1	100	78.992	Panthera_pardus
ENSDARG00000056235	smndc1	100	78.992	ENSPTIG00000011451	SMNDC1	100	78.992	Panthera_tigris_altaica
ENSDARG00000056235	smndc1	100	78.992	ENSPTRG00000002937	SMNDC1	100	78.992	Pan_troglodytes
ENSDARG00000056235	smndc1	100	73.840	ENSPANG00000031346	-	100	73.840	Papio_anubis
ENSDARG00000056235	smndc1	100	78.992	ENSPANG00000020805	-	100	78.992	Papio_anubis
ENSDARG00000056235	smndc1	100	78.481	ENSPKIG00000017164	smndc1	100	78.481	Paramormyrops_kingsleyae
ENSDARG00000056235	smndc1	100	79.832	ENSPSIG00000012257	SMNDC1	100	79.832	Pelodiscus_sinensis
ENSDARG00000056235	smndc1	100	77.215	ENSPMGG00000015651	smndc1	100	77.215	Periophthalmus_magnuspinnatus
ENSDARG00000056235	smndc1	100	78.992	ENSPEMG00000022058	Smndc1	100	78.992	Peromyscus_maniculatus_bairdii
ENSDARG00000056235	smndc1	100	68.724	ENSPMAG00000007705	smndc1	100	68.724	Petromyzon_marinus
ENSDARG00000056235	smndc1	97	59.389	ENSPCIG00000009693	-	100	59.389	Phascolarctos_cinereus
ENSDARG00000056235	smndc1	100	78.992	ENSPCIG00000018419	SMNDC1	100	78.992	Phascolarctos_cinereus
ENSDARG00000056235	smndc1	100	81.933	ENSPFOG00000017113	smndc1	100	81.933	Poecilia_formosa
ENSDARG00000056235	smndc1	100	81.513	ENSPLAG00000010372	smndc1	100	81.513	Poecilia_latipinna
ENSDARG00000056235	smndc1	100	82.773	ENSPMEG00000012288	smndc1	100	82.773	Poecilia_mexicana
ENSDARG00000056235	smndc1	100	81.172	ENSPREG00000012279	smndc1	100	81.172	Poecilia_reticulata
ENSDARG00000056235	smndc1	100	78.992	ENSPPYG00000002643	SMNDC1	100	78.992	Pongo_abelii
ENSDARG00000056235	smndc1	81	75.648	ENSPCAG00000016183	SMNDC1	100	75.648	Procavia_capensis
ENSDARG00000056235	smndc1	100	78.992	ENSPCOG00000024343	SMNDC1	100	78.992	Propithecus_coquereli
ENSDARG00000056235	smndc1	77	89.583	ENSPVAG00000004368	SMNDC1	77	89.583	Pteropus_vampyrus
ENSDARG00000056235	smndc1	83	81.407	ENSPNYG00000024093	smndc1	86	81.407	Pundamilia_nyererei
ENSDARG00000056235	smndc1	100	82.278	ENSPNAG00000025285	smndc1	100	82.278	Pygocentrus_nattereri
ENSDARG00000056235	smndc1	100	78.992	ENSRNOG00000014833	Smndc1	100	78.992	Rattus_norvegicus
ENSDARG00000056235	smndc1	100	63.291	ENSRBIG00000032452	-	100	63.291	Rhinopithecus_bieti
ENSDARG00000056235	smndc1	100	78.571	ENSRBIG00000000224	-	100	78.571	Rhinopithecus_bieti
ENSDARG00000056235	smndc1	100	78.992	ENSRROG00000044992	-	100	78.992	Rhinopithecus_roxellana
ENSDARG00000056235	smndc1	100	63.713	ENSRROG00000039125	-	100	63.713	Rhinopithecus_roxellana
ENSDARG00000056235	smndc1	100	78.992	ENSSBOG00000026789	SMNDC1	100	78.992	Saimiri_boliviensis_boliviensis
ENSDARG00000056235	smndc1	100	78.992	ENSSHAG00000015189	SMNDC1	100	78.992	Sarcophilus_harrisii
ENSDARG00000056235	smndc1	100	79.325	ENSSFOG00015008311	smndc1	100	79.325	Scleropages_formosus
ENSDARG00000056235	smndc1	100	83.682	ENSSMAG00000020118	smndc1	100	83.682	Scophthalmus_maximus
ENSDARG00000056235	smndc1	100	84.100	ENSSDUG00000015330	smndc1	100	84.100	Seriola_dumerili
ENSDARG00000056235	smndc1	100	84.100	ENSSLDG00000017325	smndc1	100	84.100	Seriola_lalandi_dorsalis
ENSDARG00000056235	smndc1	100	79.412	ENSSARG00000006063	SMNDC1	100	79.412	Sorex_araneus
ENSDARG00000056235	smndc1	100	80.672	ENSSPUG00000004574	SMNDC1	100	80.672	Sphenodon_punctatus
ENSDARG00000056235	smndc1	100	82.008	ENSSPAG00000000338	smndc1	100	82.008	Stegastes_partitus
ENSDARG00000056235	smndc1	100	78.992	ENSSSCG00000030507	SMNDC1	100	78.992	Sus_scrofa
ENSDARG00000056235	smndc1	100	79.832	ENSTGUG00000010599	SMNDC1	100	79.832	Taeniopygia_guttata
ENSDARG00000056235	smndc1	100	79.498	ENSTRUG00000023281	smndc1	100	79.498	Takifugu_rubripes
ENSDARG00000056235	smndc1	100	79.916	ENSTNIG00000013331	smndc1	100	79.916	Tetraodon_nigroviridis
ENSDARG00000056235	smndc1	100	79.412	ENSTBEG00000014337	SMNDC1	100	79.412	Tupaia_belangeri
ENSDARG00000056235	smndc1	100	78.992	ENSUAMG00000008142	SMNDC1	100	78.992	Ursus_americanus
ENSDARG00000056235	smndc1	100	78.992	ENSUMAG00000023722	SMNDC1	100	78.992	Ursus_maritimus
ENSDARG00000056235	smndc1	83	79.293	ENSVPAG00000003402	SMNDC1	100	79.293	Vicugna_pacos
ENSDARG00000056235	smndc1	100	78.992	ENSVVUG00000007820	SMNDC1	100	78.992	Vulpes_vulpes
ENSDARG00000056235	smndc1	59	65.493	ENSXETG00000015415	SMNDC1	100	65.493	Xenopus_tropicalis
ENSDARG00000056235	smndc1	100	83.544	ENSXCOG00000009159	smndc1	100	83.544	Xiphophorus_couchianus
ENSDARG00000056235	smndc1	100	82.845	ENSXMAG00000012755	smndc1	100	82.845	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component