EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000056387 (Gene tree)
Gene ID: 334519
Gene Symbol: rnf17
Alias: TDRD4|im:7147535|wu:fj98c04
Full Name: ring finger protein 17
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 23034 bases
Position: chr9:29548195-29571228
Accession: ZDB-GENE-030131-6451
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000116232	TUDOR	PF00567.24	2.4e-74	1	5
ENSDARP00000116232	TUDOR	PF00567.24	2.4e-74	2	5
ENSDARP00000116232	TUDOR	PF00567.24	2.4e-74	3	5
ENSDARP00000116232	TUDOR	PF00567.24	2.4e-74	4	5
ENSDARP00000116232	TUDOR	PF00567.24	2.4e-74	5	5
ENSDARP00000144505	TUDOR	PF00567.24	2.4e-74	1	5
ENSDARP00000144505	TUDOR	PF00567.24	2.4e-74	2	5
ENSDARP00000144505	TUDOR	PF00567.24	2.4e-74	3	5
ENSDARP00000144505	TUDOR	PF00567.24	2.4e-74	4	5
ENSDARP00000144505	TUDOR	PF00567.24	2.4e-74	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000176057	-	5055	-	ENSDARP00000144505	1521 (aa)	-	F1R3C5
ENSDART00000132295	-	4905	XM_021478968	ENSDARP00000116232	1521 (aa)	XP_021334643	F1R3C5

Gene Model

Click here to download ENSDARG00000056387's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000056387's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000056387	rnf17	98	31.258	ENSG00000132972	RNF17	99	34.455	Homo_sapiens
ENSDARG00000056387	rnf17	83	47.192	ENSAPOG00000017034	rnf17	97	42.385	Acanthochromis_polyacanthus
ENSDARG00000056387	rnf17	99	30.750	ENSAMEG00000017340	RNF17	98	30.727	Ailuropoda_melanoleuca
ENSDARG00000056387	rnf17	95	48.191	ENSAOCG00000018283	rnf17	99	44.959	Amphiprion_ocellaris
ENSDARG00000056387	rnf17	82	47.465	ENSAPEG00000022338	rnf17	93	47.864	Amphiprion_percula
ENSDARG00000056387	rnf17	85	40.201	ENSATEG00000002067	rnf17	99	44.366	Anabas_testudineus
ENSDARG00000056387	rnf17	80	35.802	ENSAPLG00000003969	RNF17	89	35.802	Anas_platyrhynchos
ENSDARG00000056387	rnf17	73	34.826	ENSANAG00000029969	RNF17	93	30.596	Aotus_nancymaae
ENSDARG00000056387	rnf17	99	43.484	ENSACLG00000018279	rnf17	99	43.413	Astatotilapia_calliptera
ENSDARG00000056387	rnf17	96	60.105	ENSAMXG00000011002	rnf17	99	66.667	Astyanax_mexicanus
ENSDARG00000056387	rnf17	54	33.681	ENSBTAG00000000278	RNF17	98	33.681	Bos_taurus
ENSDARG00000056387	rnf17	98	30.621	ENSCJAG00000018937	RNF17	98	35.303	Callithrix_jacchus
ENSDARG00000056387	rnf17	99	31.006	ENSCAFG00000007418	RNF17	98	31.207	Canis_familiaris
ENSDARG00000056387	rnf17	54	34.091	ENSCAFG00020002919	-	98	34.094	Canis_lupus_dingo
ENSDARG00000056387	rnf17	74	33.470	ENSCHIG00000026716	RNF17	98	33.830	Capra_hircus
ENSDARG00000056387	rnf17	93	33.252	ENSTSYG00000000365	RNF17	98	33.683	Carlito_syrichta
ENSDARG00000056387	rnf17	98	31.022	ENSCCAG00000026725	RNF17	98	34.384	Cebus_capucinus
ENSDARG00000056387	rnf17	89	34.401	ENSCATG00000040352	RNF17	98	35.090	Cercocebus_atys
ENSDARG00000056387	rnf17	98	32.192	ENSCLAG00000004127	RNF17	97	32.192	Chinchilla_lanigera
ENSDARG00000056387	rnf17	89	34.260	ENSCSAG00000018019	RNF17	89	34.260	Chlorocebus_sabaeus
ENSDARG00000056387	rnf17	54	42.537	ENSCHOG00000013310	RNF17	56	42.537	Choloepus_hoffmanni
ENSDARG00000056387	rnf17	92	31.234	ENSCPBG00000020920	RNF17	96	31.234	Chrysemys_picta_bellii
ENSDARG00000056387	rnf17	91	34.319	ENSCANG00000032927	RNF17	98	35.135	Colobus_angolensis_palliatus
ENSDARG00000056387	rnf17	99	31.300	ENSCGRG00001022658	Rnf17	98	31.392	Cricetulus_griseus_chok1gshd
ENSDARG00000056387	rnf17	99	31.300	ENSCGRG00000009924	Rnf17	98	31.392	Cricetulus_griseus_crigri
ENSDARG00000056387	rnf17	99	40.462	ENSCSEG00000008626	rnf17	99	40.462	Cynoglossus_semilaevis
ENSDARG00000056387	rnf17	76	44.900	ENSCVAG00000017008	rnf17	92	44.900	Cyprinodon_variegatus
ENSDARG00000056387	rnf17	91	33.940	ENSDNOG00000006115	RNF17	98	30.854	Dasypus_novemcinctus
ENSDARG00000056387	rnf17	50	39.556	ENSEASG00005001421	-	98	39.556	Equus_asinus_asinus
ENSDARG00000056387	rnf17	99	31.239	ENSECAG00000017152	RNF17	97	31.239	Equus_caballus
ENSDARG00000056387	rnf17	59	31.915	ENSEEUG00000000332	RNF17	65	31.915	Erinaceus_europaeus
ENSDARG00000056387	rnf17	100	47.677	ENSELUG00000005626	rnf17	99	47.754	Esox_lucius
ENSDARG00000056387	rnf17	99	30.741	ENSFCAG00000004914	RNF17	98	34.135	Felis_catus
ENSDARG00000056387	rnf17	74	32.727	ENSFALG00000008766	RNF17	79	32.727	Ficedula_albicollis
ENSDARG00000056387	rnf17	99	30.868	ENSFDAG00000017857	RNF17	98	30.868	Fukomys_damarensis
ENSDARG00000056387	rnf17	99	41.468	ENSFHEG00000014822	rnf17	99	41.447	Fundulus_heteroclitus
ENSDARG00000056387	rnf17	80	46.568	ENSGAFG00000004463	rnf17	97	46.558	Gambusia_affinis
ENSDARG00000056387	rnf17	55	45.850	ENSGACG00000001340	-	98	45.850	Gasterosteus_aculeatus
ENSDARG00000056387	rnf17	89	34.565	ENSGGOG00000014491	RNF17	98	35.135	Gorilla_gorilla
ENSDARG00000056387	rnf17	99	43.484	ENSHBUG00000003554	rnf17	99	43.413	Haplochromis_burtoni
ENSDARG00000056387	rnf17	98	30.764	ENSHGLG00000007270	RNF17	97	30.827	Heterocephalus_glaber_female
ENSDARG00000056387	rnf17	98	30.779	ENSHGLG00100017393	RNF17	97	30.842	Heterocephalus_glaber_male
ENSDARG00000056387	rnf17	69	48.175	ENSHCOG00000017676	rnf17	86	48.175	Hippocampus_comes
ENSDARG00000056387	rnf17	88	63.852	ENSIPUG00000001087	rnf17	99	58.600	Ictalurus_punctatus
ENSDARG00000056387	rnf17	54	32.030	ENSSTOG00000011255	-	99	32.030	Ictidomys_tridecemlineatus
ENSDARG00000056387	rnf17	91	34.286	ENSJJAG00000016584	Rnf17	97	31.883	Jaculus_jaculus
ENSDARG00000056387	rnf17	77	46.393	ENSKMAG00000013403	rnf17	99	43.008	Kryptolebias_marmoratus
ENSDARG00000056387	rnf17	95	42.318	ENSLBEG00000014910	rnf17	97	42.388	Labrus_bergylta
ENSDARG00000056387	rnf17	68	32.687	ENSLACG00000000323	RNF17	97	32.687	Latimeria_chalumnae
ENSDARG00000056387	rnf17	99	40.421	ENSLOCG00000010768	rnf17	99	40.421	Lepisosteus_oculatus
ENSDARG00000056387	rnf17	89	34.319	ENSMFAG00000032388	RNF17	98	35.090	Macaca_fascicularis
ENSDARG00000056387	rnf17	89	34.319	ENSMMUG00000014610	RNF17	98	35.090	Macaca_mulatta
ENSDARG00000056387	rnf17	89	34.319	ENSMNEG00000011234	RNF17	98	35.090	Macaca_nemestrina
ENSDARG00000056387	rnf17	89	34.321	ENSMLEG00000030227	RNF17	89	34.321	Mandrillus_leucophaeus
ENSDARG00000056387	rnf17	80	49.425	ENSMAMG00000020403	rnf17	94	49.425	Mastacembelus_armatus
ENSDARG00000056387	rnf17	99	43.546	ENSMZEG00005019166	rnf17	99	43.476	Maylandia_zebra
ENSDARG00000056387	rnf17	74	31.219	ENSMGAG00000015138	RNF17	96	31.219	Meleagris_gallopavo
ENSDARG00000056387	rnf17	92	33.876	ENSMAUG00000004788	Rnf17	98	30.988	Mesocricetus_auratus
ENSDARG00000056387	rnf17	99	31.261	ENSMICG00000010364	RNF17	98	34.234	Microcebus_murinus
ENSDARG00000056387	rnf17	59	35.853	ENSMOCG00000011818	-	99	35.853	Microtus_ochrogaster
ENSDARG00000056387	rnf17	81	54.015	ENSMMOG00000019514	rnf17	91	54.015	Mola_mola
ENSDARG00000056387	rnf17	99	31.793	ENSMODG00000007827	RNF17	97	31.633	Monodelphis_domestica
ENSDARG00000056387	rnf17	89	44.995	ENSMALG00000016943	rnf17	90	44.995	Monopterus_albus
ENSDARG00000056387	rnf17	99	31.691	MGP_CAROLIEiJ_G0019337	Rnf17	98	31.752	Mus_caroli
ENSDARG00000056387	rnf17	92	34.300	ENSMUSG00000000365	Rnf17	98	31.656	Mus_musculus
ENSDARG00000056387	rnf17	91	34.307	MGP_PahariEiJ_G0030355	Rnf17	97	31.579	Mus_pahari
ENSDARG00000056387	rnf17	92	34.628	MGP_SPRETEiJ_G0020228	Rnf17	98	31.893	Mus_spretus
ENSDARG00000056387	rnf17	99	31.400	ENSMPUG00000013305	RNF17	98	31.316	Mustela_putorius_furo
ENSDARG00000056387	rnf17	98	31.111	ENSMLUG00000003903	RNF17	97	31.111	Myotis_lucifugus
ENSDARG00000056387	rnf17	98	32.407	ENSNGAG00000013553	Rnf17	97	32.306	Nannospalax_galili
ENSDARG00000056387	rnf17	81	46.363	ENSNBRG00000012006	rnf17	95	46.363	Neolamprologus_brichardi
ENSDARG00000056387	rnf17	98	31.397	ENSNLEG00000013780	RNF17	98	35.552	Nomascus_leucogenys
ENSDARG00000056387	rnf17	56	41.818	ENSMEUG00000003276	-	52	41.818	Notamacropus_eugenii
ENSDARG00000056387	rnf17	75	37.209	ENSOPRG00000016743	-	76	37.209	Ochotona_princeps
ENSDARG00000056387	rnf17	99	43.985	ENSONIG00000015746	rnf17	100	46.846	Oreochromis_niloticus
ENSDARG00000056387	rnf17	99	31.117	ENSOCUG00000007384	RNF17	98	31.117	Oryctolagus_cuniculus
ENSDARG00000056387	rnf17	88	41.726	ENSORLG00000012818	rnf17	99	41.832	Oryzias_latipes
ENSDARG00000056387	rnf17	99	41.539	ENSORLG00020009879	-	99	41.725	Oryzias_latipes_hni
ENSDARG00000056387	rnf17	99	41.497	ENSORLG00015013027	-	99	41.741	Oryzias_latipes_hsok
ENSDARG00000056387	rnf17	75	43.803	ENSOMEG00000009891	rnf17	95	43.803	Oryzias_melastigma
ENSDARG00000056387	rnf17	99	31.493	ENSOGAG00000014803	RNF17	98	31.614	Otolemur_garnettii
ENSDARG00000056387	rnf17	90	33.470	ENSOARG00000014641	RNF17	99	30.886	Ovis_aries
ENSDARG00000056387	rnf17	74	34.818	ENSPPAG00000028779	RNF17	98	35.143	Pan_paniscus
ENSDARG00000056387	rnf17	99	30.517	ENSPPRG00000009230	RNF17	98	33.684	Panthera_pardus
ENSDARG00000056387	rnf17	99	30.854	ENSPTIG00000001738	RNF17	98	33.835	Panthera_tigris_altaica
ENSDARG00000056387	rnf17	98	31.312	ENSPTRG00000005713	RNF17	98	35.143	Pan_troglodytes
ENSDARG00000056387	rnf17	89	34.401	ENSPANG00000007640	RNF17	98	35.090	Papio_anubis
ENSDARG00000056387	rnf17	79	46.029	ENSPKIG00000001648	rnf17	95	46.029	Paramormyrops_kingsleyae
ENSDARG00000056387	rnf17	74	35.270	ENSPSIG00000011245	RNF17	99	35.270	Pelodiscus_sinensis
ENSDARG00000056387	rnf17	98	31.995	ENSPEMG00000008693	Rnf17	97	31.995	Peromyscus_maniculatus_bairdii
ENSDARG00000056387	rnf17	69	34.103	ENSPCIG00000009190	-	93	33.624	Phascolarctos_cinereus
ENSDARG00000056387	rnf17	99	42.857	ENSPFOG00000007124	rnf17	99	42.982	Poecilia_formosa
ENSDARG00000056387	rnf17	99	43.011	ENSPLAG00000006198	rnf17	99	43.390	Poecilia_latipinna
ENSDARG00000056387	rnf17	99	43.390	ENSPMEG00000022432	rnf17	99	43.707	Poecilia_mexicana
ENSDARG00000056387	rnf17	78	46.275	ENSPREG00000001414	rnf17	87	46.667	Poecilia_reticulata
ENSDARG00000056387	rnf17	98	31.443	ENSPPYG00000005215	RNF17	97	31.443	Pongo_abelii
ENSDARG00000056387	rnf17	64	38.350	ENSPCAG00000002665	RNF17	65	38.350	Procavia_capensis
ENSDARG00000056387	rnf17	83	46.324	ENSPVAG00000013021	RNF17	82	46.324	Pteropus_vampyrus
ENSDARG00000056387	rnf17	93	61.417	ENSPNAG00000027505	rnf17	99	65.202	Pygocentrus_nattereri
ENSDARG00000056387	rnf17	98	31.734	ENSRNOG00000008059	Rnf17	97	31.686	Rattus_norvegicus
ENSDARG00000056387	rnf17	98	30.429	ENSRBIG00000027010	RNF17	97	30.552	Rhinopithecus_bieti
ENSDARG00000056387	rnf17	89	34.486	ENSRROG00000022801	RNF17	98	35.294	Rhinopithecus_roxellana
ENSDARG00000056387	rnf17	98	30.917	ENSSBOG00000021661	RNF17	98	34.783	Saimiri_boliviensis_boliviensis
ENSDARG00000056387	rnf17	99	31.681	ENSSHAG00000005609	RNF17	98	31.681	Sarcophilus_harrisii
ENSDARG00000056387	rnf17	75	45.880	ENSSFOG00015023037	rnf17	89	45.880	Scleropages_formosus
ENSDARG00000056387	rnf17	82	46.967	ENSSMAG00000007429	rnf17	89	46.967	Scophthalmus_maximus
ENSDARG00000056387	rnf17	83	46.847	ENSSDUG00000013530	rnf17	99	43.969	Seriola_dumerili
ENSDARG00000056387	rnf17	84	47.430	ENSSLDG00000019577	rnf17	99	44.275	Seriola_lalandi_dorsalis
ENSDARG00000056387	rnf17	69	35.127	ENSSARG00000003016	RNF17	62	35.127	Sorex_araneus
ENSDARG00000056387	rnf17	88	31.541	ENSSPUG00000008917	RNF17	94	31.541	Sphenodon_punctatus
ENSDARG00000056387	rnf17	81	47.530	ENSSPAG00000001925	rnf17	90	47.388	Stegastes_partitus
ENSDARG00000056387	rnf17	81	34.354	ENSSSCG00000009572	RNF17	91	31.833	Sus_scrofa
ENSDARG00000056387	rnf17	57	33.429	ENSTGUG00000011267	-	100	33.429	Taeniopygia_guttata
ENSDARG00000056387	rnf17	100	39.421	ENSTRUG00000015498	rnf17	100	39.421	Takifugu_rubripes
ENSDARG00000056387	rnf17	74	43.680	ENSTNIG00000015681	rnf17	99	43.680	Tetraodon_nigroviridis
ENSDARG00000056387	rnf17	79	40.000	ENSTBEG00000000282	RNF17	73	40.000	Tupaia_belangeri
ENSDARG00000056387	rnf17	84	45.070	ENSVPAG00000011388	RNF17	77	45.070	Vicugna_pacos
ENSDARG00000056387	rnf17	99	31.144	ENSVVUG00000006226	RNF17	98	31.204	Vulpes_vulpes
ENSDARG00000056387	rnf17	70	30.623	ENSXETG00000034020	RNF17	100	38.386	Xenopus_tropicalis
ENSDARG00000056387	rnf17	91	41.904	ENSXCOG00000018295	rnf17	99	42.321	Xiphophorus_couchianus
ENSDARG00000056387	rnf17	91	42.887	ENSXMAG00000014747	rnf17	99	43.308	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0046872	metal ion binding	-	IEA	Function