EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000056475 (Gene tree)
Gene ID: 791478
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1 associated protein 1b
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 6802 bases
Position: chr2:24310635-24317436
Accession: ZDB-GENE-040426-2386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000073432	RRM_1	PF00076.22	2.3e-28	1	2
ENSDARP00000073432	RRM_1	PF00076.22	2.3e-28	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000134627	-	676	-	-	- (aa)	-	-
ENSDART00000143416	-	2410	-	-	- (aa)	-	-
ENSDART00000146021	-	748	-	-	- (aa)	-	-
ENSDART00000155677	-	818	-	-	- (aa)	-	-
ENSDART00000137891	-	802	-	-	- (aa)	-	-
ENSDART00000146170	-	542	-	-	- (aa)	-	-
ENSDART00000138230	-	801	-	-	- (aa)	-	-
ENSDART00000147008	-	755	-	-	- (aa)	-	-
ENSDART00000131393	-	692	-	-	- (aa)	-	-
ENSDART00000078975	-	1723	-	ENSDARP00000073432	316 (aa)	-	F1QXG2

Gene Model

Click here to download ENSDARG00000056475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000056475's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000056475	trnau1apb	55	30.114	ENSDARG00000052536	tia1	68	30.114
ENSDARG00000056475	trnau1apb	94	40.134	ENSDARG00000101323	trnau1apa	89	37.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000056475	trnau1apb	98	65.409	ENSAPOG00000010086	trnau1apb	100	61.747	Acanthochromis_polyacanthus
ENSDARG00000056475	trnau1apb	98	67.500	ENSACIG00000001863	trnau1apb	99	65.938	Amphilophus_citrinellus
ENSDARG00000056475	trnau1apb	98	66.272	ENSAOCG00000011891	trnau1apb	100	63.743	Amphiprion_ocellaris
ENSDARG00000056475	trnau1apb	98	63.772	ENSAPEG00000008029	trnau1apb	100	65.089	Amphiprion_percula
ENSDARG00000056475	trnau1apb	98	65.385	ENSATEG00000002196	trnau1apb	100	64.035	Anabas_testudineus
ENSDARG00000056475	trnau1apb	98	67.077	ENSACLG00000003016	trnau1apb	99	65.231	Astatotilapia_calliptera
ENSDARG00000056475	trnau1apb	98	83.387	ENSAMXG00000001805	trnau1apb	99	83.067	Astyanax_mexicanus
ENSDARG00000056475	trnau1apb	99	64.412	ENSCSEG00000018215	trnau1apb	99	65.000	Cynoglossus_semilaevis
ENSDARG00000056475	trnau1apb	94	58.055	ENSCVAG00000017866	trnau1apb	100	55.015	Cyprinodon_variegatus
ENSDARG00000056475	trnau1apb	100	73.765	ENSELUG00000016683	trnau1apb	100	77.778	Esox_lucius
ENSDARG00000056475	trnau1apb	99	60.870	ENSFHEG00000001267	trnau1apb	99	57.391	Fundulus_heteroclitus
ENSDARG00000056475	trnau1apb	97	64.350	ENSGMOG00000001160	trnau1apb	99	60.896	Gadus_morhua
ENSDARG00000056475	trnau1apb	57	82.682	ENSGAFG00000006770	trnau1apb	99	61.783	Gambusia_affinis
ENSDARG00000056475	trnau1apb	98	66.565	ENSGACG00000014944	trnau1apb	100	64.072	Gasterosteus_aculeatus
ENSDARG00000056475	trnau1apb	68	46.729	ENSGAGG00000022384	-	77	44.860	Gopherus_agassizii
ENSDARG00000056475	trnau1apb	98	64.985	ENSHBUG00000018944	trnau1apb	99	63.798	Haplochromis_burtoni
ENSDARG00000056475	trnau1apb	71	72.727	ENSHCOG00000011350	trnau1apb	73	70.563	Hippocampus_comes
ENSDARG00000056475	trnau1apb	98	83.175	ENSIPUG00000008843	tsp1l	100	83.861	Ictalurus_punctatus
ENSDARG00000056475	trnau1apb	67	73.636	ENSKMAG00000010082	trnau1apb	99	61.652	Kryptolebias_marmoratus
ENSDARG00000056475	trnau1apb	98	65.361	ENSLBEG00000020480	trnau1apb	100	63.095	Labrus_bergylta
ENSDARG00000056475	trnau1apb	98	61.783	ENSLOCG00000013175	trnau1apb	98	61.783	Lepisosteus_oculatus
ENSDARG00000056475	trnau1apb	99	65.000	ENSMAMG00000012192	trnau1apb	100	64.412	Mastacembelus_armatus
ENSDARG00000056475	trnau1apb	98	64.985	ENSMZEG00005014852	trnau1apb	99	63.798	Maylandia_zebra
ENSDARG00000056475	trnau1apb	68	47.222	ENSMGAG00000003234	-	98	45.116	Meleagris_gallopavo
ENSDARG00000056475	trnau1apb	96	57.143	ENSMMOG00000021521	trnau1apb	100	56.268	Mola_mola
ENSDARG00000056475	trnau1apb	98	61.270	ENSMALG00000003772	trnau1apb	99	63.987	Monopterus_albus
ENSDARG00000056475	trnau1apb	97	67.712	ENSNBRG00000000751	trnau1apb	99	65.831	Neolamprologus_brichardi
ENSDARG00000056475	trnau1apb	97	63.810	ENSONIG00000016639	trnau1apb	99	61.270	Oreochromis_niloticus
ENSDARG00000056475	trnau1apb	63	78.500	ENSORLG00000013265	trnau1apb	99	62.139	Oryzias_latipes
ENSDARG00000056475	trnau1apb	98	63.235	ENSORLG00020004464	trnau1apb	99	62.209	Oryzias_latipes_hni
ENSDARG00000056475	trnau1apb	98	63.235	ENSORLG00015021098	trnau1apb	99	62.209	Oryzias_latipes_hsok
ENSDARG00000056475	trnau1apb	63	78.000	ENSOMEG00000016531	trnau1apb	99	63.006	Oryzias_melastigma
ENSDARG00000056475	trnau1apb	100	72.508	ENSPKIG00000007995	trnau1apb	100	72.508	Paramormyrops_kingsleyae
ENSDARG00000056475	trnau1apb	68	48.131	ENSPSIG00000004189	-	77	46.729	Pelodiscus_sinensis
ENSDARG00000056475	trnau1apb	97	60.714	ENSPMGG00000018509	trnau1apb	98	58.917	Periophthalmus_magnuspinnatus
ENSDARG00000056475	trnau1apb	98	64.151	ENSPFOG00000003938	trnau1apb	99	65.204	Poecilia_formosa
ENSDARG00000056475	trnau1apb	98	60.411	ENSPLAG00000015480	trnau1apb	99	60.526	Poecilia_latipinna
ENSDARG00000056475	trnau1apb	98	60.411	ENSPMEG00000012743	trnau1apb	99	60.526	Poecilia_mexicana
ENSDARG00000056475	trnau1apb	98	61.877	ENSPREG00000015035	trnau1apb	99	60.526	Poecilia_reticulata
ENSDARG00000056475	trnau1apb	98	64.615	ENSPNYG00000012127	trnau1apb	99	62.769	Pundamilia_nyererei
ENSDARG00000056475	trnau1apb	100	84.424	ENSPNAG00000019138	trnau1apb	100	82.866	Pygocentrus_nattereri
ENSDARG00000056475	trnau1apb	99	73.193	ENSSFOG00015014158	trnau1apb	99	70.482	Scleropages_formosus
ENSDARG00000056475	trnau1apb	97	65.758	ENSSMAG00000001745	trnau1apb	98	64.545	Scophthalmus_maximus
ENSDARG00000056475	trnau1apb	98	65.385	ENSSDUG00000011109	trnau1apb	99	64.793	Seriola_dumerili
ENSDARG00000056475	trnau1apb	98	65.385	ENSSLDG00000012947	trnau1apb	99	64.793	Seriola_lalandi_dorsalis
ENSDARG00000056475	trnau1apb	67	38.911	ENSSPUG00000016701	-	82	36.863	Sphenodon_punctatus
ENSDARG00000056475	trnau1apb	98	66.272	ENSSPAG00000006917	trnau1apb	100	64.327	Stegastes_partitus
ENSDARG00000056475	trnau1apb	99	61.404	ENSTRUG00000008608	trnau1apb	100	62.222	Takifugu_rubripes
ENSDARG00000056475	trnau1apb	98	57.188	ENSTNIG00000000916	trnau1apb	100	55.312	Tetraodon_nigroviridis
ENSDARG00000056475	trnau1apb	92	57.143	ENSXCOG00000007974	trnau1apb	93	57.143	Xiphophorus_couchianus
ENSDARG00000056475	trnau1apb	98	61.290	ENSXMAG00000029918	trnau1apb	99	60.234	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006376	mRNA splice site selection	21873635.	IBA	Process
GO:0006412	translation	-	IEA	Process