EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: ENSDARG00000056794 (Gene tree)
Gene ID: 550525
Gene Symbol: zgc:110197
Alias: si:dkey-52k1.1|zgc:110197
Full Name: zgc:110197
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 7373 bases
Position: chr13:11963789-11971161
Accession: ZDB-GENE-050417-368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000066229	MMR_HSR1	PF01926.23	4.4e-07	1	1
ENSDARP00000151866	MMR_HSR1	PF01926.23	4.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000158369	-	1014	XM_009307160	ENSDARP00000133017	96 (aa)	XP_009305435	Q568N2
ENSDART00000066230	-	543	-	ENSDARP00000066229	181 (aa)	-	E7F7G0
ENSDART00000185614	-	1026	-	ENSDARP00000151866	182 (aa)	-	A0A2R8QI61

Gene Model

Click here to download ENSDARG00000056794's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000056794's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000056794	zgc:110197	95	44.767	ENSDARG00000009484	arf1	96	44.767
ENSDARG00000056794	zgc:110197	87	30.994	ENSDARG00000033320	sar1ab	86	30.994
ENSDARG00000056794	zgc:110197	91	45.783	ENSDARG00000014763	arf2a	92	45.783
ENSDARG00000056794	zgc:110197	91	32.934	ENSDARG00000078686	arl8a	90	32.934
ENSDARG00000056794	zgc:110197	61	30.172	ENSDARG00000037967	si:dkey-16l2.16	82	31.959
ENSDARG00000056794	zgc:110197	87	41.772	ENSDARG00000018627	arl5a	88	41.772
ENSDARG00000056794	zgc:110197	99	76.243	ENSDARG00000015404	arl3l2	97	76.243
ENSDARG00000056794	zgc:110197	91	33.533	ENSDARG00000070318	arl8bb	90	33.533
ENSDARG00000056794	zgc:110197	91	45.783	ENSDARG00000056582	arf2b	92	45.783
ENSDARG00000056794	zgc:110197	91	46.988	ENSDARG00000070539	arf3a	92	46.988
ENSDARG00000056794	zgc:110197	91	32.759	ENSDARG00000012763	arl13b	67	32.759
ENSDARG00000056794	zgc:110197	92	35.838	ENSDARG00000032708	arl4cb	90	35.838
ENSDARG00000056794	zgc:110197	91	36.842	ENSDARG00000099918	arl4aa	86	36.842
ENSDARG00000056794	zgc:110197	91	43.976	ENSDARG00000101680	arl1	92	46.497
ENSDARG00000056794	zgc:110197	99	75.138	ENSDARG00000111106	arl3l1	97	75.138
ENSDARG00000056794	zgc:110197	91	43.030	ENSDARG00000113899	zgc:77650	92	43.030
ENSDARG00000056794	zgc:110197	91	33.533	ENSDARG00000006915	arl8ba	90	33.533
ENSDARG00000056794	zgc:110197	96	37.838	ENSDARG00000057857	arfrp1	92	37.838
ENSDARG00000056794	zgc:110197	93	36.932	ENSDARG00000057606	arl4ca	92	36.932
ENSDARG00000056794	zgc:110197	100	94.505	ENSDARG00000071409	arl3	100	94.505
ENSDARG00000056794	zgc:110197	92	37.931	ENSDARG00000033182	arl4ab	87	37.931
ENSDARG00000056794	zgc:110197	95	43.678	ENSDARG00000094709	arl8	96	43.678
ENSDARG00000056794	zgc:110197	92	37.870	ENSDARG00000036637	arl11	94	37.870
ENSDARG00000056794	zgc:110197	92	35.260	ENSDARG00000045074	arl4d	87	35.260
ENSDARG00000056794	zgc:110197	91	45.783	ENSDARG00000016393	arf2b	89	49.219
ENSDARG00000056794	zgc:110197	98	39.106	ENSDARG00000035719	arl5c	99	39.106
ENSDARG00000056794	zgc:110197	99	35.676	ENSDARG00000032056	arl6	99	35.676
ENSDARG00000056794	zgc:110197	71	31.250	ENSDARG00000103403	sar1b	65	31.250
ENSDARG00000056794	zgc:110197	91	43.030	ENSDARG00000070472	arf5	92	43.030
ENSDARG00000056794	zgc:110197	91	46.386	ENSDARG00000036998	arf3b	92	46.386
ENSDARG00000056794	zgc:110197	91	36.364	ENSDARG00000074210	ARF5	81	36.364
ENSDARG00000056794	zgc:110197	85	47.170	ENSDARG00000063223	arl14	79	47.170
ENSDARG00000056794	zgc:110197	91	44.242	ENSDARG00000045989	arf4a	92	44.242
ENSDARG00000056794	zgc:110197	99	52.222	ENSDARG00000069496	arl2	97	52.222

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005525	GTP binding	-	IEA	Function