EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000056855 (Gene tree)
Gene ID: 558898
Gene Symbol: gatc
Alias: si:rp71-1c23.3
Full Name: glutamyl-tRNA amidotransferase subunit C
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 5385 bases
Position: chr5:20103085-20108469
Accession: ZDB-GENE-060526-381
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000073880	Glu-tRNAGln	PF02686.15	4.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000079424	-	804	-	ENSDARP00000073880	184 (aa)	-	A2BHB7

Gene Model

Click here to download ENSDARG00000056855's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00970	Aminoacyl-tRNA biosynthesis	KEGG
dre01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000056855's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000056855	gatc	55	64.706	ENSG00000257218	GATC	100	70.213	Homo_sapiens
ENSDARG00000056855	gatc	55	64.706	ENSAMEG00000013298	-	75	64.706	Ailuropoda_melanoleuca
ENSDARG00000056855	gatc	57	70.192	ENSACIG00000016853	gatc	74	70.192	Amphilophus_citrinellus
ENSDARG00000056855	gatc	67	77.419	ENSAOCG00000014641	gatc	99	77.419	Amphiprion_ocellaris
ENSDARG00000056855	gatc	76	72.662	ENSAPEG00000023411	gatc	71	72.662	Amphiprion_percula
ENSDARG00000056855	gatc	56	69.903	ENSACAG00000002868	-	76	69.903	Anolis_carolinensis
ENSDARG00000056855	gatc	55	65.686	ENSANAG00000034389	-	75	65.686	Aotus_nancymaae
ENSDARG00000056855	gatc	83	65.605	ENSACLG00000026251	gatc	81	65.605	Astatotilapia_calliptera
ENSDARG00000056855	gatc	99	67.021	ENSAMXG00000004252	gatc	82	67.553	Astyanax_mexicanus
ENSDARG00000056855	gatc	55	63.725	ENSBTAG00000012791	GATC	75	63.725	Bos_taurus
ENSDARG00000056855	gatc	64	39.316	WBGene00013433	Y66D12A.7	67	39.316	Caenorhabditis_elegans
ENSDARG00000056855	gatc	55	65.686	ENSCJAG00000001183	-	55	67.000	Callithrix_jacchus
ENSDARG00000056855	gatc	54	67.000	ENSCAFG00000010311	-	74	67.000	Canis_familiaris
ENSDARG00000056855	gatc	54	67.000	ENSCAFG00020020606	-	74	67.000	Canis_lupus_dingo
ENSDARG00000056855	gatc	55	63.725	ENSCHIG00000019423	-	75	63.725	Capra_hircus
ENSDARG00000056855	gatc	55	65.686	ENSTSYG00000006845	-	75	65.686	Carlito_syrichta
ENSDARG00000056855	gatc	64	57.025	ENSCPOG00000026436	-	80	57.025	Cavia_porcellus
ENSDARG00000056855	gatc	55	65.686	ENSCCAG00000022235	-	75	65.686	Cebus_capucinus
ENSDARG00000056855	gatc	55	64.706	ENSCATG00000038807	GATC	75	64.706	Cercocebus_atys
ENSDARG00000056855	gatc	52	66.667	ENSCLAG00000011015	-	60	66.667	Chinchilla_lanigera
ENSDARG00000056855	gatc	55	65.686	ENSCSAG00000002259	GATC	75	65.686	Chlorocebus_sabaeus
ENSDARG00000056855	gatc	54	66.000	ENSCHOG00000009235	-	74	66.000	Choloepus_hoffmanni
ENSDARG00000056855	gatc	70	64.062	ENSCPBG00000011342	-	68	64.062	Chrysemys_picta_bellii
ENSDARG00000056855	gatc	55	64.706	ENSCANG00000031071	GATC	75	64.706	Colobus_angolensis_palliatus
ENSDARG00000056855	gatc	53	64.948	ENSCGRG00001019220	-	63	64.948	Cricetulus_griseus_chok1gshd
ENSDARG00000056855	gatc	53	64.948	ENSCGRG00000004184	-	63	64.948	Cricetulus_griseus_crigri
ENSDARG00000056855	gatc	60	70.000	ENSCSEG00000016618	-	64	70.000	Cynoglossus_semilaevis
ENSDARG00000056855	gatc	74	68.613	ENSCSEG00000007798	gatc	69	68.613	Cynoglossus_semilaevis
ENSDARG00000056855	gatc	100	61.905	ENSCVAG00000004364	gatc	100	61.905	Cyprinodon_variegatus
ENSDARG00000056855	gatc	57	60.345	ENSDNOG00000012593	-	65	59.813	Dasypus_novemcinctus
ENSDARG00000056855	gatc	62	46.610	FBgn0064115	GatC	76	46.610	Drosophila_melanogaster
ENSDARG00000056855	gatc	54	54.545	ENSETEG00000002604	-	73	54.545	Echinops_telfairi
ENSDARG00000056855	gatc	54	47.475	ENSEBUG00000008772	gatc	57	47.475	Eptatretus_burgeri
ENSDARG00000056855	gatc	55	65.686	ENSECAG00000011118	-	75	65.686	Equus_caballus
ENSDARG00000056855	gatc	55	58.416	ENSEEUG00000011638	-	75	58.416	Erinaceus_europaeus
ENSDARG00000056855	gatc	66	69.600	ENSELUG00000012608	gatc	91	61.029	Esox_lucius
ENSDARG00000056855	gatc	56	63.107	ENSFCAG00000038718	-	76	63.107	Felis_catus
ENSDARG00000056855	gatc	65	62.185	ENSFALG00000007564	-	78	62.185	Ficedula_albicollis
ENSDARG00000056855	gatc	56	65.049	ENSFDAG00000018720	-	76	65.049	Fukomys_damarensis
ENSDARG00000056855	gatc	90	68.675	ENSFHEG00000014992	GATC	87	68.675	Fundulus_heteroclitus
ENSDARG00000056855	gatc	84	60.645	ENSGMOG00000008742	gatc	96	60.645	Gadus_morhua
ENSDARG00000056855	gatc	58	61.321	ENSGALG00000007195	-	84	58.974	Gallus_gallus
ENSDARG00000056855	gatc	66	72.727	ENSGAFG00000012801	gatc	77	72.727	Gambusia_affinis
ENSDARG00000056855	gatc	70	75.194	ENSGACG00000008973	gatc	66	75.194	Gasterosteus_aculeatus
ENSDARG00000056855	gatc	98	51.053	ENSGAGG00000016018	-	99	51.053	Gopherus_agassizii
ENSDARG00000056855	gatc	50	65.217	ENSGGOG00000026821	GATC	71	65.217	Gorilla_gorilla
ENSDARG00000056855	gatc	83	66.242	ENSHBUG00000006827	gatc	81	66.242	Haplochromis_burtoni
ENSDARG00000056855	gatc	57	65.385	ENSHGLG00000011394	GATC	76	65.385	Heterocephalus_glaber_female
ENSDARG00000056855	gatc	57	64.423	ENSHGLG00100018850	-	76	64.423	Heterocephalus_glaber_male
ENSDARG00000056855	gatc	70	73.438	ENSHCOG00000009209	gatc	100	73.438	Hippocampus_comes
ENSDARG00000056855	gatc	94	68.786	ENSIPUG00000023072	gatc	79	69.364	Ictalurus_punctatus
ENSDARG00000056855	gatc	59	62.385	ENSSTOG00000025740	-	71	62.385	Ictidomys_tridecemlineatus
ENSDARG00000056855	gatc	52	68.750	ENSJJAG00000000369	Gatc	61	68.750	Jaculus_jaculus
ENSDARG00000056855	gatc	71	73.077	ENSKMAG00000016476	gatc	100	73.077	Kryptolebias_marmoratus
ENSDARG00000056855	gatc	85	65.000	ENSLBEG00000007603	gatc	88	65.000	Labrus_bergylta
ENSDARG00000056855	gatc	79	57.419	ENSLACG00000018239	-	80	57.419	Latimeria_chalumnae
ENSDARG00000056855	gatc	93	63.372	ENSLOCG00000004056	gatc	91	63.372	Lepisosteus_oculatus
ENSDARG00000056855	gatc	73	51.111	ENSLAFG00000006384	-	84	51.111	Loxodonta_africana
ENSDARG00000056855	gatc	55	64.706	ENSMFAG00000034197	GATC	75	64.706	Macaca_fascicularis
ENSDARG00000056855	gatc	55	64.706	ENSMMUG00000046665	GATC	75	64.706	Macaca_mulatta
ENSDARG00000056855	gatc	55	64.706	ENSMNEG00000034653	GATC	75	64.706	Macaca_nemestrina
ENSDARG00000056855	gatc	55	65.686	ENSMLEG00000039862	GATC	75	65.686	Mandrillus_leucophaeus
ENSDARG00000056855	gatc	79	72.603	ENSMAMG00000015851	gatc	80	72.603	Mastacembelus_armatus
ENSDARG00000056855	gatc	83	65.605	ENSMZEG00005016072	gatc	81	65.605	Maylandia_zebra
ENSDARG00000056855	gatc	58	63.208	ENSMGAG00000008733	-	100	63.208	Meleagris_gallopavo
ENSDARG00000056855	gatc	67	56.911	ENSMAUG00000012756	Gatc	79	56.911	Mesocricetus_auratus
ENSDARG00000056855	gatc	55	66.667	ENSMICG00000008669	-	75	66.667	Microcebus_murinus
ENSDARG00000056855	gatc	60	58.559	ENSMOCG00000005051	Gatc	68	58.559	Microtus_ochrogaster
ENSDARG00000056855	gatc	63	69.231	ENSMMOG00000017695	gatc	95	70.175	Mola_mola
ENSDARG00000056855	gatc	56	61.165	ENSMODG00000003152	-	78	61.165	Monodelphis_domestica
ENSDARG00000056855	gatc	72	54.225	MGP_CAROLIEiJ_G0027623	Gatc	92	54.225	Mus_caroli
ENSDARG00000056855	gatc	72	54.225	ENSMUSG00000029536	Gatc	92	54.225	Mus_musculus
ENSDARG00000056855	gatc	72	54.930	MGP_PahariEiJ_G0024203	Gatc	92	54.930	Mus_pahari
ENSDARG00000056855	gatc	72	53.521	MGP_SPRETEiJ_G0028621	Gatc	92	53.521	Mus_spretus
ENSDARG00000056855	gatc	55	65.686	ENSMPUG00000003183	-	75	65.686	Mustela_putorius_furo
ENSDARG00000056855	gatc	52	62.105	ENSMLUG00000010341	-	94	62.105	Myotis_lucifugus
ENSDARG00000056855	gatc	52	66.316	ENSNGAG00000004734	Gatc	63	66.316	Nannospalax_galili
ENSDARG00000056855	gatc	83	66.242	ENSNBRG00000007810	gatc	81	66.242	Neolamprologus_brichardi
ENSDARG00000056855	gatc	59	61.468	ENSNLEG00000015651	GATC	80	61.468	Nomascus_leucogenys
ENSDARG00000056855	gatc	57	60.577	ENSMEUG00000004064	-	84	60.577	Notamacropus_eugenii
ENSDARG00000056855	gatc	55	66.667	ENSOPRG00000004226	-	75	66.667	Ochotona_princeps
ENSDARG00000056855	gatc	50	66.304	ENSODEG00000005919	-	67	66.304	Octodon_degus
ENSDARG00000056855	gatc	70	73.282	ENSONIG00000013444	gatc	90	73.282	Oreochromis_niloticus
ENSDARG00000056855	gatc	61	60.714	ENSOCUG00000009867	-	82	60.714	Oryctolagus_cuniculus
ENSDARG00000056855	gatc	66	72.727	ENSORLG00000007156	gatc	100	72.727	Oryzias_latipes
ENSDARG00000056855	gatc	73	70.370	ENSORLG00020014991	gatc	72	70.370	Oryzias_latipes_hni
ENSDARG00000056855	gatc	73	71.111	ENSORLG00015003450	gatc	72	71.111	Oryzias_latipes_hsok
ENSDARG00000056855	gatc	73	72.593	ENSOMEG00000002280	gatc	72	72.593	Oryzias_melastigma
ENSDARG00000056855	gatc	58	63.551	ENSOGAG00000003850	-	98	63.551	Otolemur_garnettii
ENSDARG00000056855	gatc	55	63.725	ENSOARG00000012338	-	79	63.725	Ovis_aries
ENSDARG00000056855	gatc	55	64.706	ENSPPAG00000029164	GATC	75	64.706	Pan_paniscus
ENSDARG00000056855	gatc	56	64.078	ENSPPRG00000000929	-	76	64.078	Panthera_pardus
ENSDARG00000056855	gatc	56	64.078	ENSPTIG00000009889	-	76	64.078	Panthera_tigris_altaica
ENSDARG00000056855	gatc	55	64.706	ENSPTRG00000049887	GATC	76	64.706	Pan_troglodytes
ENSDARG00000056855	gatc	55	63.725	ENSPANG00000033975	GATC	75	63.725	Papio_anubis
ENSDARG00000056855	gatc	93	59.091	ENSPKIG00000024856	gatc	91	59.091	Paramormyrops_kingsleyae
ENSDARG00000056855	gatc	60	65.766	ENSPSIG00000011112	-	95	65.766	Pelodiscus_sinensis
ENSDARG00000056855	gatc	68	76.190	ENSPMGG00000018829	gatc	80	76.190	Periophthalmus_magnuspinnatus
ENSDARG00000056855	gatc	61	61.607	ENSPEMG00000000665	Gatc	68	61.607	Peromyscus_maniculatus_bairdii
ENSDARG00000056855	gatc	51	63.441	ENSPCIG00000025999	-	60	63.441	Phascolarctos_cinereus
ENSDARG00000056855	gatc	76	75.000	ENSPFOG00000011603	gatc	76	75.000	Poecilia_formosa
ENSDARG00000056855	gatc	76	74.286	ENSPLAG00000002471	gatc	76	74.286	Poecilia_latipinna
ENSDARG00000056855	gatc	76	74.286	ENSPMEG00000020958	gatc	76	74.286	Poecilia_mexicana
ENSDARG00000056855	gatc	60	80.909	ENSPREG00000022256	gatc	74	80.909	Poecilia_reticulata
ENSDARG00000056855	gatc	58	63.208	ENSPPYG00000005030	GATC	78	63.208	Pongo_abelii
ENSDARG00000056855	gatc	61	57.895	ENSPCAG00000013864	-	84	57.895	Procavia_capensis
ENSDARG00000056855	gatc	63	52.991	ENSPCOG00000015558	-	91	52.991	Propithecus_coquereli
ENSDARG00000056855	gatc	50	66.304	ENSPCOG00000009493	-	71	66.304	Propithecus_coquereli
ENSDARG00000056855	gatc	56	64.762	ENSPVAG00000002228	-	78	64.762	Pteropus_vampyrus
ENSDARG00000056855	gatc	83	65.605	ENSPNYG00000016015	gatc	81	65.605	Pundamilia_nyererei
ENSDARG00000056855	gatc	93	71.512	ENSPNAG00000001239	gatc	77	71.512	Pygocentrus_nattereri
ENSDARG00000056855	gatc	52	70.526	ENSRNOG00000001161	Gatc	61	70.526	Rattus_norvegicus
ENSDARG00000056855	gatc	51	67.742	ENSRNOG00000045621	Gatc	61	67.742	Rattus_norvegicus
ENSDARG00000056855	gatc	55	64.706	ENSRBIG00000033363	GATC	75	64.706	Rhinopithecus_bieti
ENSDARG00000056855	gatc	55	64.706	ENSRROG00000042802	GATC	75	64.706	Rhinopithecus_roxellana
ENSDARG00000056855	gatc	59	61.468	ENSSBOG00000033750	-	80	61.468	Saimiri_boliviensis_boliviensis
ENSDARG00000056855	gatc	58	58.491	ENSSHAG00000005745	-	100	58.491	Sarcophilus_harrisii
ENSDARG00000056855	gatc	78	62.238	ENSSFOG00015002508	gatc	90	62.238	Scleropages_formosus
ENSDARG00000056855	gatc	88	65.663	ENSSMAG00000014280	gatc	92	65.663	Scophthalmus_maximus
ENSDARG00000056855	gatc	98	58.919	ENSSDUG00000012206	gatc	94	58.919	Seriola_dumerili
ENSDARG00000056855	gatc	98	59.459	ENSSLDG00000025159	gatc	93	59.459	Seriola_lalandi_dorsalis
ENSDARG00000056855	gatc	65	60.504	ENSSPUG00000015693	-	91	55.556	Sphenodon_punctatus
ENSDARG00000056855	gatc	82	70.000	ENSSPAG00000011860	gatc	79	70.000	Stegastes_partitus
ENSDARG00000056855	gatc	69	54.962	ENSSSCG00000032747	-	87	54.962	Sus_scrofa
ENSDARG00000056855	gatc	58	67.290	ENSTGUG00000009561	-	99	67.290	Taeniopygia_guttata
ENSDARG00000056855	gatc	72	75.940	ENSTRUG00000021596	gatc	69	75.000	Takifugu_rubripes
ENSDARG00000056855	gatc	76	69.784	ENSTNIG00000015879	gatc	67	69.784	Tetraodon_nigroviridis
ENSDARG00000056855	gatc	54	66.000	ENSTTRG00000000144	GATC	74	66.000	Tursiops_truncatus
ENSDARG00000056855	gatc	55	65.686	ENSUAMG00000015523	-	75	65.686	Ursus_americanus
ENSDARG00000056855	gatc	54	67.000	ENSVVUG00000021055	-	74	67.000	Vulpes_vulpes
ENSDARG00000056855	gatc	60	80.000	ENSXCOG00000017087	gatc	80	80.000	Xiphophorus_couchianus
ENSDARG00000056855	gatc	95	60.326	ENSXMAG00000018267	gatc	99	60.326	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0006412	translation	-	IEA	Process
GO:0006450	regulation of translational fidelity	-	IEA	Process
GO:0016874	ligase activity	-	IEA	Function
GO:0030956	glutamyl-tRNA(Gln) amidotransferase complex	-	IEA	Component
GO:0032543	mitochondrial translation	-	IEA	Process
GO:0050567	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	-	IEA	Function
GO:0070681	glutaminyl-tRNAGln biosynthesis via transamidation	-	IEA	Process