EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000144503	-	929	XM_005173094	ENSDARP00000121831	215 (aa)	XP_005173151	P79735
ENSDART00000128717	-	1319	-	ENSDARP00000108629	215 (aa)	-	P79735
ENSDART00000137589	-	780	-	-	- (aa)	-	-
ENSDART00000034438	-	1247	-	ENSDARP00000032532	215 (aa)	-	P79735

Gene Model

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000057026	ran	92	88.325	WBGene00004302	ran-1	96	87.864	Caenorhabditis_elegans
ENSDARG00000057026	ran	99	94.860	ENSMUSG00000029430	Ran	99	94.860	Mus_musculus
ENSDARG00000057026	ran	99	88.785	ENSMUSG00000028287	1700009N14Rik	99	88.785	Mus_musculus
ENSDARG00000057026	ran	99	80.189	YLR293C	GSP1	93	82.353	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000070	mitotic sister chromatid segregation	-	ISS	Process
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000287	magnesium ion binding	-	ISS	Function
GO:0003407	neural retina development	26864484.	IMP	Process
GO:0003924	GTPase activity	21873635.	IBA	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0003924	GTPase activity	-	ISS	Function
GO:0005515	protein binding	26864484.	IPI	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005525	GTP binding	-	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005635	nuclear envelope	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0006606	protein import into nucleus	21873635.	IBA	Process
GO:0006606	protein import into nucleus	-	ISS	Process
GO:0006913	nucleocytoplasmic transport	-	IEA	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0046039	GTP metabolic process	-	ISS	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0060041	retina development in camera-type eye	26864484.	IMP	Process
GO:0061015	snRNA import into nucleus	-	ISS	Process