EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000057328 (Gene tree)
Gene ID: 30114
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: cysteine three histidine 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 3099 bases
Position: chr7:17947217-17950315
Accession: ZDB-GENE-990806-20
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000092374	zf-CCCH	PF00642.24	7.7e-33	1	4
ENSDARP00000092374	zf-CCCH	PF00642.24	7.7e-33	2	4
ENSDARP00000092374	zf-CCCH	PF00642.24	7.7e-33	3	4
ENSDARP00000092374	zf-CCCH	PF00642.24	7.7e-33	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000101601	-	1553	-	ENSDARP00000092374	319 (aa)	-	Q9PU62

Gene Model

Click here to download ENSDARG00000057328's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000057328's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000057328	cth1	89	56.164	ENSAPOG00000012552	cth1	95	56.164	Acanthochromis_polyacanthus
ENSDARG00000057328	cth1	57	68.229	ENSACIG00000016026	cth1	90	54.967	Amphilophus_citrinellus
ENSDARG00000057328	cth1	90	57.333	ENSAOCG00000001644	cth1	91	58.000	Amphiprion_ocellaris
ENSDARG00000057328	cth1	90	57.333	ENSAPEG00000008930	cth1	91	58.000	Amphiprion_percula
ENSDARG00000057328	cth1	90	57.188	ENSATEG00000002281	cth1	89	58.746	Anabas_testudineus
ENSDARG00000057328	cth1	67	66.820	ENSACLG00000015353	cth1	95	58.621	Astatotilapia_calliptera
ENSDARG00000057328	cth1	96	75.241	ENSAMXG00000025717	cth1	92	75.258	Astyanax_mexicanus
ENSDARG00000057328	cth1	90	54.785	ENSCSEG00000014617	cth1	91	56.818	Cynoglossus_semilaevis
ENSDARG00000057328	cth1	81	56.757	ENSCVAG00000001680	cth1	51	54.615	Cyprinodon_variegatus
ENSDARG00000057328	cth1	99	63.582	ENSELUG00000012738	cth1	89	64.883	Esox_lucius
ENSDARG00000057328	cth1	90	54.027	ENSFHEG00000022665	cth1	91	54.362	Fundulus_heteroclitus
ENSDARG00000057328	cth1	89	55.593	ENSGMOG00000007360	cth1	88	55.254	Gadus_morhua
ENSDARG00000057328	cth1	99	51.220	ENSGAFG00000019288	cth1	91	49.333	Gambusia_affinis
ENSDARG00000057328	cth1	99	55.828	ENSGACG00000000802	cth1	90	55.219	Gasterosteus_aculeatus
ENSDARG00000057328	cth1	100	58.204	ENSHBUG00000014400	cth1	90	58.703	Haplochromis_burtoni
ENSDARG00000057328	cth1	95	51.148	ENSHCOG00000010276	cth1	89	46.441	Hippocampus_comes
ENSDARG00000057328	cth1	100	74.766	ENSIPUG00000018040	cth1	99	75.389	Ictalurus_punctatus
ENSDARG00000057328	cth1	90	54.576	ENSKMAG00000005944	cth1	90	54.237	Kryptolebias_marmoratus
ENSDARG00000057328	cth1	90	61.745	ENSLBEG00000019253	cth1	91	61.794	Labrus_bergylta
ENSDARG00000057328	cth1	63	57.561	ENSLOCG00000002047	cth1	98	57.073	Lepisosteus_oculatus
ENSDARG00000057328	cth1	66	62.896	ENSMAMG00000001525	cth1	60	62.896	Mastacembelus_armatus
ENSDARG00000057328	cth1	98	58.675	ENSMZEG00005022335	cth1	90	58.703	Maylandia_zebra
ENSDARG00000057328	cth1	81	59.701	ENSMMOG00000020518	cth1	85	61.132	Mola_mola
ENSDARG00000057328	cth1	100	47.668	ENSMALG00000020738	cth1	60	58.952	Monopterus_albus
ENSDARG00000057328	cth1	90	56.993	ENSNBRG00000022789	cth1	77	57.647	Neolamprologus_brichardi
ENSDARG00000057328	cth1	67	66.222	ENSONIG00000021318	cth1	90	58.249	Oreochromis_niloticus
ENSDARG00000057328	cth1	96	52.229	ENSORLG00000022847	cth1	85	52.857	Oryzias_latipes
ENSDARG00000057328	cth1	96	52.229	ENSORLG00020011979	cth1	85	52.837	Oryzias_latipes_hni
ENSDARG00000057328	cth1	96	52.229	ENSORLG00015013084	cth1	78	53.846	Oryzias_latipes_hsok
ENSDARG00000057328	cth1	91	55.822	ENSOMEG00000005809	cth1	68	55.814	Oryzias_melastigma
ENSDARG00000057328	cth1	94	61.093	ENSPKIG00000015883	cth1	89	59.661	Paramormyrops_kingsleyae
ENSDARG00000057328	cth1	89	55.975	ENSPMGG00000004275	cth1	91	55.960	Periophthalmus_magnuspinnatus
ENSDARG00000057328	cth1	99	53.086	ENSPFOG00000013583	cth1	85	51.890	Poecilia_formosa
ENSDARG00000057328	cth1	99	53.086	ENSPLAG00000018158	cth1	85	51.034	Poecilia_latipinna
ENSDARG00000057328	cth1	99	54.688	ENSPMEG00000005744	cth1	90	51.027	Poecilia_mexicana
ENSDARG00000057328	cth1	99	51.988	ENSPREG00000004099	cth1	90	50.519	Poecilia_reticulata
ENSDARG00000057328	cth1	87	60.507	ENSPNYG00000016705	cth1	79	60.000	Pundamilia_nyererei
ENSDARG00000057328	cth1	100	75.776	ENSPNAG00000013147	cth1	99	76.087	Pygocentrus_nattereri
ENSDARG00000057328	cth1	94	57.003	ENSSFOG00015017190	cth1	85	55.088	Scleropages_formosus
ENSDARG00000057328	cth1	90	58.333	ENSSMAG00000007977	cth1	91	58.804	Scophthalmus_maximus
ENSDARG00000057328	cth1	90	59.091	ENSSDUG00000004321	cth1	91	58.306	Seriola_dumerili
ENSDARG00000057328	cth1	90	58.252	ENSSLDG00000010023	-	91	58.442	Seriola_lalandi_dorsalis
ENSDARG00000057328	cth1	90	58.252	ENSSLDG00000004516	-	91	58.442	Seriola_lalandi_dorsalis
ENSDARG00000057328	cth1	90	58.900	ENSSLDG00000012760	cth1	91	59.091	Seriola_lalandi_dorsalis
ENSDARG00000057328	cth1	90	57.239	ENSSPAG00000018659	cth1	91	57.239	Stegastes_partitus
ENSDARG00000057328	cth1	99	52.147	ENSTRUG00000012770	cth1	91	53.535	Takifugu_rubripes
ENSDARG00000057328	cth1	96	52.050	ENSTNIG00000000740	cth1	91	51.678	Tetraodon_nigroviridis
ENSDARG00000057328	cth1	84	52.434	ENSXCOG00000003710	cth1	82	51.200	Xiphophorus_couchianus
ENSDARG00000057328	cth1	99	52.615	ENSXMAG00000023885	cth1	91	49.833	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005829	cytosol	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0061158	3'-UTR-mediated mRNA destabilization	21873635.	IBA	Process