EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000057484 (Gene tree)
Gene ID
406691
Gene Symbol
srsf2a
Alias
hm:zeh0252|sfrs2|srsf2|wu:fb51a05|wu:fk59b08|zgc:56283
Full Name
serine/arginine-rich splicing factor 2a
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
6076 bases
Position
chr12:31720673-31726748
Accession
ZDB-GENE-040426-2706
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000127448RRM_1PF00076.223.7e-2211
ENSDARP00000115120RRM_1PF00076.228.3e-2211
ENSDARP00000127296RRM_1PF00076.221.1e-2111
ENSDARP00000074623RRM_1PF00076.221.4e-2111
ENSDARP00000135738RRM_1PF00076.221.4e-2111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000165299-788-ENSDARP00000135738225 (aa)-Q7ZV13
ENSDART00000140550-567-ENSDARP0000012725985 (aa)-U3JAJ1
ENSDART00000153174-707-ENSDARP00000127448118 (aa)-U3JB26
ENSDART00000080173-1776-ENSDARP00000074623225 (aa)-Q7ZV13
ENSDART00000132753-582-ENSDARP0000012736747 (aa)-U3JAU8
ENSDART00000137464-1151-ENSDARP00000115120174 (aa)-E9QHD6
ENSDART00000136278-1024--- (aa)--
ENSDART00000153102-908-ENSDARP00000127145148 (aa)-U3JA80
ENSDART00000153056-855-ENSDARP00000127296199 (aa)-U3JAM8
ENSDART00000146446-603-ENSDARP0000012711113 (aa)-U3JA46
ENSDART00000153210-636--- (aa)--
Gene Model
Click here to download ENSDARG00000057484's gene model file
Pathways
Pathway IDPathway NameSource
dre03040SpliceosomeKEGG
dre05168Herpes simplex virus 1 infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000057484's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000057484srsf2a6238.356ENSDARG00000059360srsf3b8134.286
ENSDARG00000057484srsf2a8596.000ENSDARG00000103893srsf2b5288.596
ENSDARG00000057484srsf2a7236.957ENSDARG00000101057srsf7b5836.559
ENSDARG00000057484srsf2a8330.693ENSDARG00000014569hnrnpr5730.693
ENSDARG00000057484srsf2a7034.940ENSDARG00000009753sf3b66234.940
ENSDARG00000057484srsf2a6239.726ENSDARG00000100815srsf3a8232.759
ENSDARG00000057484srsf2a6443.038ENSDARG00000057691srsf1a6643.902
ENSDARG00000057484srsf2a9038.830ENSDARG00000035325srsf7a9935.065
ENSDARG00000057484srsf2a6441.333ENSDARG00000014244rbmx5843.478
ENSDARG00000057484srsf2a9531.818ENSDARG00000101744elavl1b6131.818
ENSDARG00000057484srsf2a6732.432ENSDARG00000021140pabpc1b5631.646
ENSDARG00000057484srsf2a5146.667ENSDARG00000112572CR293507.19246.667
ENSDARG00000057484srsf2a6239.726ENSDARG00000025397srsf3a8232.759
ENSDARG00000057484srsf2a7034.940ENSDARG00000031809rbm24b5834.940
ENSDARG00000057484srsf2a7034.940ENSDARG00000102995rbm24a7134.940
ENSDARG00000057484srsf2a6441.333ENSDARG00000103672cirbpa5238.144
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000057484srsf2a9077.358ENSG00000263465SRSF85264.865Homo_sapiens
ENSDARG00000057484srsf2a8596.000ENSG00000161547SRSF29094.167Homo_sapiens
ENSDARG00000057484srsf2a9787.069ENSAPOG00000008073srsf2b5587.500Acanthochromis_polyacanthus
ENSDARG00000057484srsf2a10098.305ENSAPOG00000024396srsf2a5298.305Acanthochromis_polyacanthus
ENSDARG00000057484srsf2a6997.561ENSAMEG00000013624-5092.045Ailuropoda_melanoleuca
ENSDARG00000057484srsf2a10095.763ENSACIG00000018502srsf2a6895.763Amphilophus_citrinellus
ENSDARG00000057484srsf2a8597.000ENSACIG00000009605srsf2b5690.833Amphilophus_citrinellus
ENSDARG00000057484srsf2a8597.000ENSAOCG00000022441-5690.833Amphiprion_ocellaris
ENSDARG00000057484srsf2a10097.458ENSAOCG00000021878srsf2a5497.458Amphiprion_ocellaris
ENSDARG00000057484srsf2a8597.000ENSAPEG00000006375-5690.833Amphiprion_percula
ENSDARG00000057484srsf2a10097.458ENSAPEG00000023494srsf2a5497.458Amphiprion_percula
ENSDARG00000057484srsf2a8597.000ENSATEG00000018159srsf2b5890.083Anabas_testudineus
ENSDARG00000057484srsf2a9597.321ENSATEG00000004082srsf2a8174.866Anabas_testudineus
ENSDARG00000057484srsf2a9793.966ENSACAG00000008553-5494.167Anolis_carolinensis
ENSDARG00000057484srsf2a8596.000ENSANAG00000004226SRSF25494.167Aotus_nancymaae
ENSDARG00000057484srsf2a10095.763ENSACLG00000027016srsf2a5295.763Astatotilapia_calliptera
ENSDARG00000057484srsf2a8597.000ENSACLG00000017862srsf2b5589.256Astatotilapia_calliptera
ENSDARG00000057484srsf2a9197.196ENSAMXG00000042718srsf2a5397.321Astyanax_mexicanus
ENSDARG00000057484srsf2a8596.000ENSBTAG00000018258SRSF25494.167Bos_taurus
ENSDARG00000057484srsf2a7463.218ENSBTAG00000050905-5163.218Bos_taurus
ENSDARG00000057484srsf2a7961.290WBGene00004701rsp-48358.095Caenorhabditis_elegans
ENSDARG00000057484srsf2a8596.000ENSCJAG00000041154SRSF25494.167Callithrix_jacchus
ENSDARG00000057484srsf2a8696.040ENSCAFG00000005147SRSF25493.333Canis_familiaris
ENSDARG00000057484srsf2a8596.000ENSCAFG00020006267-5494.167Canis_lupus_dingo
ENSDARG00000057484srsf2a8596.000ENSCHIG00000017001-5494.167Capra_hircus
ENSDARG00000057484srsf2a8596.000ENSTSYG00000006517-5494.167Carlito_syrichta
ENSDARG00000057484srsf2a9195.327ENSCCAG00000037532SRSF25493.333Cebus_capucinus
ENSDARG00000057484srsf2a8596.000ENSCATG00000033650SRSF25494.167Cercocebus_atys
ENSDARG00000057484srsf2a7697.778ENSCLAG00000012450-10066.321Chinchilla_lanigera
ENSDARG00000057484srsf2a8596.000ENSCSAG00000005108SRSF25494.167Chlorocebus_sabaeus
ENSDARG00000057484srsf2a9292.593ENSCHOG00000014019-5392.593Choloepus_hoffmanni
ENSDARG00000057484srsf2a8596.000ENSCPBG00000027975-5494.167Chrysemys_picta_bellii
ENSDARG00000057484srsf2a7881.522ENSCING00000004198-5779.787Ciona_intestinalis
ENSDARG00000057484srsf2a7882.609ENSCSAVG00000009199-6173.874Ciona_savignyi
ENSDARG00000057484srsf2a8596.000ENSCANG00000028176SRSF25494.167Colobus_angolensis_palliatus
ENSDARG00000057484srsf2a8081.915ENSCANG00000022047SRSF85658.599Colobus_angolensis_palliatus
ENSDARG00000057484srsf2a8081.915ENSCANG00000028971-6358.385Colobus_angolensis_palliatus
ENSDARG00000057484srsf2a8596.000ENSCGRG00001023483Srsf25494.167Cricetulus_griseus_chok1gshd
ENSDARG00000057484srsf2a9596.429ENSCSEG00000013387srsf2a5296.429Cynoglossus_semilaevis
ENSDARG00000057484srsf2a10097.458ENSCVAG00000022056srsf2a8472.449Cyprinodon_variegatus
ENSDARG00000057484srsf2a8596.000ENSDNOG00000000439-5494.167Dasypus_novemcinctus
ENSDARG00000057484srsf2a8565.000ENSDNOG00000033905-5365.000Dasypus_novemcinctus
ENSDARG00000057484srsf2a7997.849ENSDORG00000014460Srsf210063.592Dipodomys_ordii
ENSDARG00000057484srsf2a7582.022FBgn0265298SC355771.930Drosophila_melanogaster
ENSDARG00000057484srsf2a8178.947ENSEBUG00000008729-5970.000Eptatretus_burgeri
ENSDARG00000057484srsf2a8596.000ENSEASG00005004319-5494.167Equus_asinus_asinus
ENSDARG00000057484srsf2a8596.000ENSECAG00000033515-5494.167Equus_caballus
ENSDARG00000057484srsf2a8597.000ENSELUG00000017620srsf2b8563.298Esox_lucius
ENSDARG00000057484srsf2a8598.000ENSELUG00000023373srsf2a5694.167Esox_lucius
ENSDARG00000057484srsf2a8596.000ENSFCAG00000043466-5494.167Felis_catus
ENSDARG00000057484srsf2a9292.661ENSFALG00000000869-5092.661Ficedula_albicollis
ENSDARG00000057484srsf2a7297.647ENSFDAG00000012646-9368.452Fukomys_damarensis
ENSDARG00000057484srsf2a10097.458ENSFHEG00000010835srsf2a5097.458Fundulus_heteroclitus
ENSDARG00000057484srsf2a8598.000ENSGMOG00000007642srsf2b5880.000Gadus_morhua
ENSDARG00000057484srsf2a8598.000ENSGMOG00000001599srsf2a5396.190Gadus_morhua
ENSDARG00000057484srsf2a9793.966ENSGALG00000017357SRSF25494.167Gallus_gallus
ENSDARG00000057484srsf2a10097.458ENSGAFG00000005791srsf2a5897.458Gambusia_affinis
ENSDARG00000057484srsf2a9296.330ENSGACG00000003105srsf2a9175.806Gasterosteus_aculeatus
ENSDARG00000057484srsf2a8598.000ENSGACG00000014884srsf2b5579.286Gasterosteus_aculeatus
ENSDARG00000057484srsf2a8596.000ENSGAGG00000024457-5494.167Gopherus_agassizii
ENSDARG00000057484srsf2a8080.851ENSGGOG00000022679SRSF85263.514Gorilla_gorilla
ENSDARG00000057484srsf2a8596.000ENSGGOG00000014378SRSF27870.440Gorilla_gorilla
ENSDARG00000057484srsf2a8597.000ENSHBUG00000014017srsf2b5589.256Haplochromis_burtoni
ENSDARG00000057484srsf2a10095.763ENSHBUG00000013254srsf2a5295.763Haplochromis_burtoni
ENSDARG00000057484srsf2a8596.000ENSHGLG00000017262-5494.167Heterocephalus_glaber_female
ENSDARG00000057484srsf2a8896.154ENSHCOG00000015538srsf2a7880.124Hippocampus_comes
ENSDARG00000057484srsf2a7493.103ENSHCOG00000008598-8685.455Hippocampus_comes
ENSDARG00000057484srsf2a10097.458ENSIPUG00000004066SRSF25497.458Ictalurus_punctatus
ENSDARG00000057484srsf2a7997.849ENSSTOG00000025265-10070.109Ictidomys_tridecemlineatus
ENSDARG00000057484srsf2a8596.000ENSJJAG00000013794Srsf25494.167Jaculus_jaculus
ENSDARG00000057484srsf2a9596.429ENSKMAG00000009464srsf2a8570.256Kryptolebias_marmoratus
ENSDARG00000057484srsf2a9598.214ENSLBEG00000027265srsf2a5298.214Labrus_bergylta
ENSDARG00000057484srsf2a8495.960ENSLBEG00000022770srsf2b5682.090Labrus_bergylta
ENSDARG00000057484srsf2a9193.458ENSLACG00000013394srsf2a5492.500Latimeria_chalumnae
ENSDARG00000057484srsf2a9794.737ENSLOCG00000011252srsf2a5594.915Lepisosteus_oculatus
ENSDARG00000057484srsf2a8596.000ENSMFAG00000045524SRSF25494.167Macaca_fascicularis
ENSDARG00000057484srsf2a8596.000ENSMMUG00000022413SRSF25295.370Macaca_mulatta
ENSDARG00000057484srsf2a8596.000ENSMNEG00000031444SRSF25494.167Macaca_nemestrina
ENSDARG00000057484srsf2a7596.629ENSMLEG00000025525SRSF210065.445Mandrillus_leucophaeus
ENSDARG00000057484srsf2a10097.458ENSMAMG00000002803srsf2a5197.458Mastacembelus_armatus
ENSDARG00000057484srsf2a10095.763ENSMZEG00005004205srsf2a5295.763Maylandia_zebra
ENSDARG00000057484srsf2a9587.500ENSMZEG00005001748-5087.500Maylandia_zebra
ENSDARG00000057484srsf2a8596.000ENSMAUG00000022242Srsf25494.167Mesocricetus_auratus
ENSDARG00000057484srsf2a8596.000ENSMICG00000016956-5494.167Microcebus_murinus
ENSDARG00000057484srsf2a8597.000ENSMMOG00000020132srsf2b5691.667Mola_mola
ENSDARG00000057484srsf2a10096.610ENSMMOG00000020751srsf2a5596.610Mola_mola
ENSDARG00000057484srsf2a10097.458ENSMALG00000012956srsf2a9368.664Monopterus_albus
ENSDARG00000057484srsf2a8297.938ENSMALG00000014936srsf2b5593.277Monopterus_albus
ENSDARG00000057484srsf2a8596.000MGP_CAROLIEiJ_G0017457Srsf25494.167Mus_caroli
ENSDARG00000057484srsf2a8596.000ENSMUSG00000034120Srsf25494.167Mus_musculus
ENSDARG00000057484srsf2a8596.000MGP_PahariEiJ_G0018587Srsf25494.167Mus_pahari
ENSDARG00000057484srsf2a8596.000MGP_SPRETEiJ_G0018303Srsf25494.167Mus_spretus
ENSDARG00000057484srsf2a8596.000ENSMPUG00000013408-7966.477Mustela_putorius_furo
ENSDARG00000057484srsf2a10057.627ENSMLUG00000026613-5757.627Myotis_lucifugus
ENSDARG00000057484srsf2a8596.000ENSNGAG00000021718Srsf25494.167Nannospalax_galili
ENSDARG00000057484srsf2a8597.000ENSNBRG00000021086srsf2b5689.256Neolamprologus_brichardi
ENSDARG00000057484srsf2a8596.000ENSNLEG00000002547SRSF25694.167Nomascus_leucogenys
ENSDARG00000057484srsf2a8596.000ENSMEUG00000016745-5494.167Notamacropus_eugenii
ENSDARG00000057484srsf2a8596.000ENSODEG00000014748-5494.167Octodon_degus
ENSDARG00000057484srsf2a8597.000ENSONIG00000009428srsf2b5589.256Oreochromis_niloticus
ENSDARG00000057484srsf2a10095.763ENSONIG00000019976srsf2a5295.763Oreochromis_niloticus
ENSDARG00000057484srsf2a8596.000ENSOANG00000002695-10094.167Ornithorhynchus_anatinus
ENSDARG00000057484srsf2a10071.074ENSOCUG00000021840-5173.451Oryctolagus_cuniculus
ENSDARG00000057484srsf2a8294.845ENSORLG00000001230srsf2b5785.000Oryzias_latipes
ENSDARG00000057484srsf2a9194.393ENSORLG00000029824srsf2a5192.562Oryzias_latipes
ENSDARG00000057484srsf2a8294.845ENSORLG00020014420srsf2b5785.000Oryzias_latipes_hni
ENSDARG00000057484srsf2a8294.845ENSORLG00015007643srsf2b5785.000Oryzias_latipes_hsok
ENSDARG00000057484srsf2a9795.614ENSOMEG00000007583srsf2a9462.896Oryzias_melastigma
ENSDARG00000057484srsf2a8293.814ENSOMEG00000016488srsf2b5685.833Oryzias_melastigma
ENSDARG00000057484srsf2a8596.000ENSOGAG00000028335-5494.167Otolemur_garnettii
ENSDARG00000057484srsf2a9966.949ENSOARG00000018667-5966.949Ovis_aries
ENSDARG00000057484srsf2a9966.949ENSOARG00000018359-5966.949Ovis_aries
ENSDARG00000057484srsf2a8596.000ENSPPAG00000031433SRSF25494.167Pan_paniscus
ENSDARG00000057484srsf2a9077.358ENSPTRG00000046909SRSF85264.865Pan_troglodytes
ENSDARG00000057484srsf2a8596.000ENSPTRG00000009692SRSF25494.167Pan_troglodytes
ENSDARG00000057484srsf2a8596.000ENSPANG00000020023SRSF25494.167Papio_anubis
ENSDARG00000057484srsf2a9793.860ENSPKIG00000023128-8564.615Paramormyrops_kingsleyae
ENSDARG00000057484srsf2a8598.000ENSPMGG00000006860-7288.333Periophthalmus_magnuspinnatus
ENSDARG00000057484srsf2a8894.231ENSPMGG00000010911srsf2a5891.736Periophthalmus_magnuspinnatus
ENSDARG00000057484srsf2a8278.351ENSPMAG00000005589srsf2b7660.736Petromyzon_marinus
ENSDARG00000057484srsf2a8596.000ENSPCIG00000005334-5494.167Phascolarctos_cinereus
ENSDARG00000057484srsf2a10097.458ENSPFOG00000020356srsf2a8662.255Poecilia_formosa
ENSDARG00000057484srsf2a10097.458ENSPLAG00000001856srsf2a5097.458Poecilia_latipinna
ENSDARG00000057484srsf2a10097.458ENSPMEG00000008714srsf2a8662.255Poecilia_mexicana
ENSDARG00000057484srsf2a10097.458ENSPREG00000003658srsf2a5097.458Poecilia_reticulata
ENSDARG00000057484srsf2a8596.000ENSPPYG00000008668SRSF25494.167Pongo_abelii
ENSDARG00000057484srsf2a8077.660ENSPPYG00000003786-5469.672Pongo_abelii
ENSDARG00000057484srsf2a8596.000ENSPCOG00000023806-5494.167Propithecus_coquereli
ENSDARG00000057484srsf2a8596.000ENSPVAG00000014264-10094.167Pteropus_vampyrus
ENSDARG00000057484srsf2a10095.763ENSPNYG00000001148srsf2a5295.763Pundamilia_nyererei
ENSDARG00000057484srsf2a8597.000ENSPNYG00000013014srsf2b5589.256Pundamilia_nyererei
ENSDARG00000057484srsf2a9495.495ENSPNAG00000010477srsf2a5495.763Pygocentrus_nattereri
ENSDARG00000057484srsf2a8596.000ENSRNOG00000000248Srsf25494.167Rattus_norvegicus
ENSDARG00000057484srsf2a8596.000ENSRBIG00000034493SRSF25494.167Rhinopithecus_bieti
ENSDARG00000057484srsf2a8596.000ENSRROG00000042457SRSF25494.167Rhinopithecus_roxellana
ENSDARG00000057484srsf2a8081.915ENSRROG00000026503SRSF85755.758Rhinopithecus_roxellana
ENSDARG00000057484srsf2a6682.051ENSSBOG00000029664SRSF88545.989Saimiri_boliviensis_boliviensis
ENSDARG00000057484srsf2a8197.917ENSSBOG00000030904SRSF210066.162Saimiri_boliviensis_boliviensis
ENSDARG00000057484srsf2a8595.050ENSSHAG00000005932-5593.388Sarcophilus_harrisii
ENSDARG00000057484srsf2a9696.460ENSSFOG00015003975-5395.763Scleropages_formosus
ENSDARG00000057484srsf2a8297.938ENSSMAG00000014723srsf2b5489.256Scophthalmus_maximus
ENSDARG00000057484srsf2a9596.429ENSSMAG00000005854srsf2a5396.429Scophthalmus_maximus
ENSDARG00000057484srsf2a9597.321ENSSDUG00000013865srsf2a9368.095Seriola_dumerili
ENSDARG00000057484srsf2a8598.000ENSSDUG00000014762srsf2b5693.333Seriola_dumerili
ENSDARG00000057484srsf2a8598.000ENSSLDG00000003402srsf2b5493.333Seriola_lalandi_dorsalis
ENSDARG00000057484srsf2a9597.321ENSSLDG00000017717srsf2a9368.095Seriola_lalandi_dorsalis
ENSDARG00000057484srsf2a9095.283ENSSPUG00000007582-5096.154Sphenodon_punctatus
ENSDARG00000057484srsf2a9272.727ENSSSCG00000012212-5672.727Sus_scrofa
ENSDARG00000057484srsf2a8596.000ENSSSCG00000036592-5494.167Sus_scrofa
ENSDARG00000057484srsf2a9793.103ENSTGUG00000007799-5493.333Taeniopygia_guttata
ENSDARG00000057484srsf2a10096.610ENSTRUG00000018104srsf2a9466.047Takifugu_rubripes
ENSDARG00000057484srsf2a10087.500ENSTRUG00000024363srsf2b5287.500Takifugu_rubripes
ENSDARG00000057484srsf2a10096.610ENSTNIG00000001280srsf2a9464.455Tetraodon_nigroviridis
ENSDARG00000057484srsf2a8596.000ENSTBEG00000014339-5494.167Tupaia_belangeri
ENSDARG00000057484srsf2a8596.000ENSUAMG00000013403-5494.167Ursus_americanus
ENSDARG00000057484srsf2a9794.737ENSXETG00000025271srsf25494.915Xenopus_tropicalis
ENSDARG00000057484srsf2a10097.458ENSXCOG00000005917srsf2a5497.458Xiphophorus_couchianus
ENSDARG00000057484srsf2a10097.458ENSXMAG00000015676srsf2a5097.458Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0016607nuclear speck21873635.IBAComponent
GO:0043484regulation of RNA splicing-IEAProcess
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess

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