EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000057691 (Gene tree)
Gene ID
406288
Gene Symbol
srsf1a
Alias
sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name
serine/arginine-rich splicing factor 1a
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
4439 bases
Position
chr15:16072080-16076518
Accession
ZDB-GENE-040426-1950
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000115420RRM_1PF00076.221.3e-3312
ENSDARP00000115420RRM_1PF00076.221.3e-3322
ENSDARP00000074862RRM_1PF00076.222.6e-3312
ENSDARP00000074862RRM_1PF00076.222.6e-3322
ENSDARP00000113721RRM_1PF00076.221.2e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000080413-2171XM_005157414ENSDARP00000074862257 (aa)XP_005157471Q7SXP4
ENSDART00000137058-643--- (aa)--
ENSDART00000133755-770-ENSDARP00000115420193 (aa)-E9QGF8
ENSDART00000135658-543-ENSDARP00000113721116 (aa)-E9QIC5
Gene Model
Click here to download ENSDARG00000057691's gene model file
Pathways
Pathway IDPathway NameSource
dre03040SpliceosomeKEGG
dre05168Herpes simplex virus 1 infectionKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000057691's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000057691srsf1a8848.837ENSDARG00000027734srsf5b8848.462
ENSDARG00000057691srsf1a7244.578ENSDARG00000035325srsf7a9243.478
ENSDARG00000057691srsf1a8946.328ENSDARG00000016783srsf6b7445.333
ENSDARG00000057691srsf1a9145.198ENSDARG00000105293srsf46351.389
ENSDARG00000057691srsf1a6448.649ENSDARG00000059360srsf3b5848.649
ENSDARG00000057691srsf1a6643.902ENSDARG00000057484srsf2a6443.038
ENSDARG00000057691srsf1a6448.649ENSDARG00000100815srsf3a5348.649
ENSDARG00000057691srsf1a9045.714ENSDARG00000029818srsf5a9543.939
ENSDARG00000057691srsf1a9466.298ENSDARG00000008097srsf97366.138
ENSDARG00000057691srsf1a6448.649ENSDARG00000025397srsf3a5348.649
ENSDARG00000057691srsf1a10092.746ENSDARG00000017843srsf1b10092.607
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000057691srsf1a9892.095ENSG00000136450SRSF19596.774Homo_sapiens
ENSDARG00000057691srsf1a9985.340ENSAPOG00000002748-7883.744Acanthochromis_polyacanthus
ENSDARG00000057691srsf1a9991.623ENSAPOG00000008542-8090.686Acanthochromis_polyacanthus
ENSDARG00000057691srsf1a9985.864ENSAMEG00000002635SRSF17887.745Ailuropoda_melanoleuca
ENSDARG00000057691srsf1a9985.340ENSACIG00000008091srsf1a8384.236Amphilophus_citrinellus
ENSDARG00000057691srsf1a9991.623ENSAOCG00000000337-8190.686Amphiprion_ocellaris
ENSDARG00000057691srsf1a9985.864ENSAOCG00000010671-8384.729Amphiprion_ocellaris
ENSDARG00000057691srsf1a9991.623ENSAPEG00000023352-7990.686Amphiprion_percula
ENSDARG00000057691srsf1a9985.864ENSAPEG00000009915-8384.729Amphiprion_percula
ENSDARG00000057691srsf1a10084.021ENSATEG00000021567-8183.575Anabas_testudineus
ENSDARG00000057691srsf1a9985.864ENSATEG00000022403-7784.729Anabas_testudineus
ENSDARG00000057691srsf1a9992.941ENSACAG00000005542-9992.941Anolis_carolinensis
ENSDARG00000057691srsf1a9892.095ENSANAG00000020583-9595.652Aotus_nancymaae
ENSDARG00000057691srsf1a10096.891ENSAMXG00000035996srsf1a10096.887Astyanax_mexicanus
ENSDARG00000057691srsf1a6780.282ENSAMXG00000024373-7274.096Astyanax_mexicanus
ENSDARG00000057691srsf1a9892.095ENSBTAG00000014766SRSF17889.706Bos_taurus
ENSDARG00000057691srsf1a9982.723ENSCJAG00000008111-8681.373Callithrix_jacchus
ENSDARG00000057691srsf1a9892.095ENSCJAG00000041713-9595.652Callithrix_jacchus
ENSDARG00000057691srsf1a9892.095ENSCAFG00000017430SRSF17789.706Canis_familiaris
ENSDARG00000057691srsf1a9892.095ENSCAFG00020025632-7789.706Canis_lupus_dingo
ENSDARG00000057691srsf1a9987.958ENSCHIG00000010787SRSF17889.706Capra_hircus
ENSDARG00000057691srsf1a9892.095ENSTSYG00000013899-9595.652Carlito_syrichta
ENSDARG00000057691srsf1a9892.095ENSCPOG00000032681-7889.706Cavia_porcellus
ENSDARG00000057691srsf1a9892.095ENSCCAG00000029484-9595.652Cebus_capucinus
ENSDARG00000057691srsf1a9892.095ENSCATG00000042294-9595.652Cercocebus_atys
ENSDARG00000057691srsf1a7493.023ENSCATG00000005962-7591.011Cercocebus_atys
ENSDARG00000057691srsf1a9892.095ENSCLAG00000014707-7889.706Chinchilla_lanigera
ENSDARG00000057691srsf1a9890.909ENSCSAG00000005642-7788.725Chlorocebus_sabaeus
ENSDARG00000057691srsf1a9987.958ENSCHOG00000001899SRSF17889.706Choloepus_hoffmanni
ENSDARG00000057691srsf1a9993.333ENSCPBG00000009851-9993.333Chrysemys_picta_bellii
ENSDARG00000057691srsf1a9892.095ENSCANG00000029726-9595.652Colobus_angolensis_palliatus
ENSDARG00000057691srsf1a9892.095ENSCGRG00001000670Srsf17789.706Cricetulus_griseus_chok1gshd
ENSDARG00000057691srsf1a9892.095ENSCGRG00000005590Srsf17889.706Cricetulus_griseus_crigri
ENSDARG00000057691srsf1a9986.802ENSCSEG00000009973-8086.124Cynoglossus_semilaevis
ENSDARG00000057691srsf1a9990.052ENSCSEG00000014272-8185.714Cynoglossus_semilaevis
ENSDARG00000057691srsf1a10087.047ENSCVAG00000005458-9286.528Cyprinodon_variegatus
ENSDARG00000057691srsf1a9985.864ENSCVAG00000018617-7884.729Cyprinodon_variegatus
ENSDARG00000057691srsf1a9892.095ENSDNOG00000011737-7789.706Dasypus_novemcinctus
ENSDARG00000057691srsf1a9892.095ENSDORG00000015082Srsf17889.706Dipodomys_ordii
ENSDARG00000057691srsf1a9986.911ENSETEG00000005349-6289.005Echinops_telfairi
ENSDARG00000057691srsf1a9892.095ENSEASG00005002922-7789.706Equus_asinus_asinus
ENSDARG00000057691srsf1a9987.958ENSECAG00000016654SRSF17889.706Equus_caballus
ENSDARG00000057691srsf1a9987.958ENSEEUG00000009255-6290.052Erinaceus_europaeus
ENSDARG00000057691srsf1a10089.119ENSELUG00000021646srsf1a7887.864Esox_lucius
ENSDARG00000057691srsf1a9892.095ENSFCAG00000002250-9189.583Felis_catus
ENSDARG00000057691srsf1a9877.866ENSFALG00000005062-9677.866Ficedula_albicollis
ENSDARG00000057691srsf1a9892.095ENSFDAG00000010646-7889.706Fukomys_damarensis
ENSDARG00000057691srsf1a9985.864ENSFHEG00000003174srsf1a8384.729Fundulus_heteroclitus
ENSDARG00000057691srsf1a9884.211ENSGMOG00000014787-8082.759Gadus_morhua
ENSDARG00000057691srsf1a9993.333ENSGALG00000005525SRSF19993.333Gallus_gallus
ENSDARG00000057691srsf1a9982.199ENSGACG00000020621srsf1b7880.882Gasterosteus_aculeatus
ENSDARG00000057691srsf1a9893.676ENSGAGG00000022965-9693.676Gopherus_agassizii
ENSDARG00000057691srsf1a9892.095ENSGGOG00000004386SRSF19595.652Gorilla_gorilla
ENSDARG00000057691srsf1a9985.340ENSHBUG00000016788srsf1a8084.236Haplochromis_burtoni
ENSDARG00000057691srsf1a8389.441ENSHGLG00000000600-7689.080Heterocephalus_glaber_female
ENSDARG00000057691srsf1a8389.441ENSHGLG00000000669-7689.080Heterocephalus_glaber_female
ENSDARG00000057691srsf1a9892.095ENSHGLG00100016906-7889.706Heterocephalus_glaber_male
ENSDARG00000057691srsf1a10083.420ENSHCOG00000018918srsf1a7884.951Hippocampus_comes
ENSDARG00000057691srsf1a9997.244ENSIPUG00000017039srsf1a9997.244Ictalurus_punctatus
ENSDARG00000057691srsf1a9992.188ENSIPUG00000008750srsf1b9992.188Ictalurus_punctatus
ENSDARG00000057691srsf1a9892.095ENSSTOG00000000243-9189.583Ictidomys_tridecemlineatus
ENSDARG00000057691srsf1a7494.186ENSJJAG00000014464-9382.222Jaculus_jaculus
ENSDARG00000057691srsf1a9892.095ENSJJAG00000000102-7889.706Jaculus_jaculus
ENSDARG00000057691srsf1a9985.864ENSKMAG00000019232srsf1a7884.236Kryptolebias_marmoratus
ENSDARG00000057691srsf1a9984.293ENSLBEG00000015294-7982.843Labrus_bergylta
ENSDARG00000057691srsf1a9986.911ENSLBEG00000020864-8385.714Labrus_bergylta
ENSDARG00000057691srsf1a9987.500ENSLACG00000014160srsf1a7388.235Latimeria_chalumnae
ENSDARG00000057691srsf1a9991.623ENSLOCG00000005994srsf1a7889.216Lepisosteus_oculatus
ENSDARG00000057691srsf1a9987.958ENSLAFG00000025743SRSF17889.706Loxodonta_africana
ENSDARG00000057691srsf1a9892.095ENSMFAG00000040003-9595.652Macaca_fascicularis
ENSDARG00000057691srsf1a9892.095ENSMMUG00000004725SRSF19595.652Macaca_mulatta
ENSDARG00000057691srsf1a9988.583ENSMMUG00000003260-9486.765Macaca_mulatta
ENSDARG00000057691srsf1a9988.189ENSMNEG00000015983-7786.765Macaca_nemestrina
ENSDARG00000057691srsf1a9892.095ENSMNEG00000027680-9595.652Macaca_nemestrina
ENSDARG00000057691srsf1a9987.958ENSMLEG00000040509SRSF17889.706Mandrillus_leucophaeus
ENSDARG00000057691srsf1a9886.166ENSMLEG00000015243-7684.804Mandrillus_leucophaeus
ENSDARG00000057691srsf1a9985.864ENSMAMG00000018454-7884.729Mastacembelus_armatus
ENSDARG00000057691srsf1a9989.529ENSMAMG00000019691-8087.745Mastacembelus_armatus
ENSDARG00000057691srsf1a9984.817ENSMAMG00000019687-7882.353Mastacembelus_armatus
ENSDARG00000057691srsf1a9892.095ENSMAUG00000021845Srsf17889.706Mesocricetus_auratus
ENSDARG00000057691srsf1a9892.095ENSMICG00000013639-9595.652Microcebus_murinus
ENSDARG00000057691srsf1a9892.095ENSMOCG00000001996Srsf17889.706Microtus_ochrogaster
ENSDARG00000057691srsf1a9986.387ENSMMOG00000014354srsf1a8385.714Mola_mola
ENSDARG00000057691srsf1a9989.005ENSMODG00000014781-6390.625Monodelphis_domestica
ENSDARG00000057691srsf1a7395.294ENSMALG00000007763-7877.451Monopterus_albus
ENSDARG00000057691srsf1a9984.293ENSMALG00000017129-7583.251Monopterus_albus
ENSDARG00000057691srsf1a9892.095MGP_CAROLIEiJ_G0016943Srsf19189.583Mus_caroli
ENSDARG00000057691srsf1a9892.095ENSMUSG00000018379Srsf19189.583Mus_musculus
ENSDARG00000057691srsf1a9892.095MGP_PahariEiJ_G0018074Srsf17889.706Mus_pahari
ENSDARG00000057691srsf1a9892.095MGP_SPRETEiJ_G0017790Srsf19189.583Mus_spretus
ENSDARG00000057691srsf1a9987.958ENSMPUG00000015369SRSF17889.706Mustela_putorius_furo
ENSDARG00000057691srsf1a9987.958ENSMLUG00000011040SRSF17889.706Myotis_lucifugus
ENSDARG00000057691srsf1a9980.105ENSMLUG00000023995-7883.824Myotis_lucifugus
ENSDARG00000057691srsf1a9987.958ENSNGAG00000011395Srsf17889.706Nannospalax_galili
ENSDARG00000057691srsf1a9979.058ENSNBRG00000008041srsf1b7878.922Neolamprologus_brichardi
ENSDARG00000057691srsf1a9892.095ENSNLEG00000008088-9595.652Nomascus_leucogenys
ENSDARG00000057691srsf1a7496.512ENSMEUG00000002783-9887.313Notamacropus_eugenii
ENSDARG00000057691srsf1a6786.822ENSOPRG00000001234-7286.620Ochotona_princeps
ENSDARG00000057691srsf1a9892.095ENSODEG00000011481-7889.706Octodon_degus
ENSDARG00000057691srsf1a9985.340ENSONIG00000013160-7784.236Oreochromis_niloticus
ENSDARG00000057691srsf1a9989.529ENSONIG00000004860-7987.745Oreochromis_niloticus
ENSDARG00000057691srsf1a9868.947ENSOCUG00000010894-7568.657Oryctolagus_cuniculus
ENSDARG00000057691srsf1a9985.864ENSORLG00000004580srsf1a7884.729Oryzias_latipes
ENSDARG00000057691srsf1a9985.864ENSORLG00020009456srsf1a8384.729Oryzias_latipes_hni
ENSDARG00000057691srsf1a9985.864ENSORLG00015014384srsf1a8384.729Oryzias_latipes_hsok
ENSDARG00000057691srsf1a9083.237ENSOMEG00000004106srsf1a7182.796Oryzias_melastigma
ENSDARG00000057691srsf1a9987.958ENSOGAG00000025950-7889.706Otolemur_garnettii
ENSDARG00000057691srsf1a9983.246ENSOARG00000008323SRSF17784.314Ovis_aries
ENSDARG00000057691srsf1a9892.095ENSPPAG00000043403-9595.652Pan_paniscus
ENSDARG00000057691srsf1a9892.095ENSPPRG00000004238-9189.583Panthera_pardus
ENSDARG00000057691srsf1a9892.095ENSPTRG00000049077SRSF19595.652Pan_troglodytes
ENSDARG00000057691srsf1a9892.095ENSPANG00000022305-9595.652Papio_anubis
ENSDARG00000057691srsf1a9970.703ENSPANG00000030275-7564.078Papio_anubis
ENSDARG00000057691srsf1a9991.765ENSPKIG00000012857srsf1b9991.765Paramormyrops_kingsleyae
ENSDARG00000057691srsf1a10090.674ENSPKIG00000007204srsf1a8488.350Paramormyrops_kingsleyae
ENSDARG00000057691srsf1a9987.451ENSPSIG00000009000-7892.208Pelodiscus_sinensis
ENSDARG00000057691srsf1a9981.152ENSPMGG00000005467-7881.281Periophthalmus_magnuspinnatus
ENSDARG00000057691srsf1a9985.864ENSPMGG00000013112-7988.947Periophthalmus_magnuspinnatus
ENSDARG00000057691srsf1a9892.095ENSPEMG00000021416Srsf17889.706Peromyscus_maniculatus_bairdii
ENSDARG00000057691srsf1a9989.005ENSPCIG00000006076-7890.686Phascolarctos_cinereus
ENSDARG00000057691srsf1a10086.528ENSPFOG00000018325-7086.341Poecilia_formosa
ENSDARG00000057691srsf1a10086.528ENSPLAG00000008416srsf1b8086.341Poecilia_latipinna
ENSDARG00000057691srsf1a7491.860ENSPMEG00000020607-9881.955Poecilia_mexicana
ENSDARG00000057691srsf1a10086.528ENSPMEG00000002388-8086.341Poecilia_mexicana
ENSDARG00000057691srsf1a7491.860ENSPMEG00000014312-9881.955Poecilia_mexicana
ENSDARG00000057691srsf1a9985.864ENSPREG00000009667srsf1a7884.729Poecilia_reticulata
ENSDARG00000057691srsf1a9892.095ENSPPYG00000008240SRSF17889.706Pongo_abelii
ENSDARG00000057691srsf1a9987.958ENSPCAG00000005199SRSF17889.706Procavia_capensis
ENSDARG00000057691srsf1a9972.775ENSPCOG00000025736-9473.039Propithecus_coquereli
ENSDARG00000057691srsf1a9892.095ENSPCOG00000023654-9595.652Propithecus_coquereli
ENSDARG00000057691srsf1a7196.774ENSPVAG00000000519-7496.774Pteropus_vampyrus
ENSDARG00000057691srsf1a10093.774ENSPNAG00000022241srsf1a10093.774Pygocentrus_nattereri
ENSDARG00000057691srsf1a9990.052ENSPNAG00000014601srsf1b7886.765Pygocentrus_nattereri
ENSDARG00000057691srsf1a9987.958ENSRNOG00000050323Srsf17889.706Rattus_norvegicus
ENSDARG00000057691srsf1a9892.095ENSRBIG00000034445-9595.652Rhinopithecus_bieti
ENSDARG00000057691srsf1a9892.095ENSRROG00000041506-9595.652Rhinopithecus_roxellana
ENSDARG00000057691srsf1a9892.095ENSSBOG00000025377-9595.652Saimiri_boliviensis_boliviensis
ENSDARG00000057691srsf1a9989.005ENSSHAG00000002552-7890.686Sarcophilus_harrisii
ENSDARG00000057691srsf1a5879.104ENSSFOG00015010677-6179.104Scleropages_formosus
ENSDARG00000057691srsf1a7280.723ENSSFOG00015001585-7081.333Scleropages_formosus
ENSDARG00000057691srsf1a9992.157ENSSFOG00015004800srsf1a9892.157Scleropages_formosus
ENSDARG00000057691srsf1a9989.005ENSSMAG00000009719-7987.255Scophthalmus_maximus
ENSDARG00000057691srsf1a9986.387ENSSMAG00000007018-7884.729Scophthalmus_maximus
ENSDARG00000057691srsf1a9983.246ENSSDUG00000003929-8282.843Seriola_dumerili
ENSDARG00000057691srsf1a9986.911ENSSDUG00000011303-8385.714Seriola_dumerili
ENSDARG00000057691srsf1a9977.083ENSSLDG00000016868-7778.049Seriola_lalandi_dorsalis
ENSDARG00000057691srsf1a9986.911ENSSLDG00000010543-7885.714Seriola_lalandi_dorsalis
ENSDARG00000057691srsf1a9982.292ENSSLDG00000016895-7782.990Seriola_lalandi_dorsalis
ENSDARG00000057691srsf1a9987.958ENSSARG00000010949-6290.052Sorex_araneus
ENSDARG00000057691srsf1a9893.676ENSSPUG00000000804-9693.676Sphenodon_punctatus
ENSDARG00000057691srsf1a10091.327ENSSPAG00000014152-8190.909Stegastes_partitus
ENSDARG00000057691srsf1a9986.387ENSSPAG00000022562-7885.222Stegastes_partitus
ENSDARG00000057691srsf1a9892.095ENSSSCG00000017626-7889.706Sus_scrofa
ENSDARG00000057691srsf1a7592.268ENSTGUG00000008416-10092.268Taeniopygia_guttata
ENSDARG00000057691srsf1a9985.864ENSTRUG00000003691srsf1a7884.236Takifugu_rubripes
ENSDARG00000057691srsf1a9985.864ENSTNIG00000016223srsf1a7784.236Tetraodon_nigroviridis
ENSDARG00000057691srsf1a9988.482ENSTBEG00000015378-6287.435Tupaia_belangeri
ENSDARG00000057691srsf1a6786.822ENSTTRG00000007310SRSF17286.620Tursiops_truncatus
ENSDARG00000057691srsf1a9987.958ENSUAMG00000009858SRSF17889.706Ursus_americanus
ENSDARG00000057691srsf1a9892.095ENSUMAG00000000455-7789.706Ursus_maritimus
ENSDARG00000057691srsf1a9987.435ENSVPAG00000010094SRSF17889.216Vicugna_pacos
ENSDARG00000057691srsf1a9892.095ENSVVUG00000011882-7789.706Vulpes_vulpes
ENSDARG00000057691srsf1a9991.500ENSXETG00000008954srsf18990.196Xenopus_tropicalis
ENSDARG00000057691srsf1a9985.864ENSXMAG00000011766srsf1a7884.729Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000381regulation of alternative mRNA splicing, via spliceosome21873635.IBAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-IEAComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0016607nuclear speck21873635.IBAComponent
GO:0045292mRNA cis splicing, via spliceosome21873635.IBAProcess

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