EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000057890 (Gene tree)
Gene ID: 560112
Gene Symbol: si:dkey-33c12.4
Alias: fc10f01|si:ch211-243o19.6|wu:fc10f01
Full Name: si:dkey-33c12.4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 28617 bases
Position: chr13:9339919-9368535
Accession: ZDB-GENE-030131-2527
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000077797	RRM_1	PF00076.22	8.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000083362	-	2764	XM_021480594	ENSDARP00000077797	631 (aa)	XP_021336269	B8A599
ENSDART00000135373	-	367	-	-	- (aa)	-	-
ENSDART00000138961	-	523	-	-	- (aa)	-	-
ENSDART00000144146	-	524	-	ENSDARP00000117541	170 (aa)	-	B8A5A0
ENSDART00000157540	-	422	-	-	- (aa)	-	-
ENSDART00000143653	-	640	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000057890's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000057890's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000057890	si:dkey-33c12.4	68	33.487	ENSDARG00000039082	zgc:123010	71	34.577

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000057890	si:dkey-33c12.4	58	44.686	ENSAPOG00000022403	-	60	45.477	Acanthochromis_polyacanthus
ENSDARG00000057890	si:dkey-33c12.4	65	34.742	ENSAPOG00000019633	zgc:123010	68	34.048	Acanthochromis_polyacanthus
ENSDARG00000057890	si:dkey-33c12.4	99	37.838	ENSAPOG00000005058	si:dkey-33c12.4	97	36.898	Acanthochromis_polyacanthus
ENSDARG00000057890	si:dkey-33c12.4	65	34.466	ENSACIG00000021684	zgc:123010	89	34.466	Amphilophus_citrinellus
ENSDARG00000057890	si:dkey-33c12.4	88	39.048	ENSAOCG00000000431	-	71	41.684	Amphiprion_ocellaris
ENSDARG00000057890	si:dkey-33c12.4	61	43.970	ENSAOCG00000020066	si:dkey-33c12.4	95	36.728	Amphiprion_ocellaris
ENSDARG00000057890	si:dkey-33c12.4	68	34.004	ENSAOCG00000005910	zgc:123010	68	34.524	Amphiprion_ocellaris
ENSDARG00000057890	si:dkey-33c12.4	68	34.004	ENSAPEG00000014305	zgc:123010	72	34.524	Amphiprion_percula
ENSDARG00000057890	si:dkey-33c12.4	88	39.089	ENSAPEG00000023603	-	72	41.996	Amphiprion_percula
ENSDARG00000057890	si:dkey-33c12.4	65	41.743	ENSATEG00000018885	si:dkey-33c12.4	95	37.054	Anabas_testudineus
ENSDARG00000057890	si:dkey-33c12.4	65	33.570	ENSATEG00000001220	zgc:123010	77	31.983	Anabas_testudineus
ENSDARG00000057890	si:dkey-33c12.4	58	47.132	ENSATEG00000018302	-	73	45.148	Anabas_testudineus
ENSDARG00000057890	si:dkey-33c12.4	67	31.209	ENSATEG00000022160	-	65	33.243	Anabas_testudineus
ENSDARG00000057890	si:dkey-33c12.4	72	30.498	ENSACLG00000012346	-	85	30.375	Astatotilapia_calliptera
ENSDARG00000057890	si:dkey-33c12.4	76	44.234	ENSACLG00000003019	-	84	43.846	Astatotilapia_calliptera
ENSDARG00000057890	si:dkey-33c12.4	55	42.895	ENSACLG00000014192	si:dkey-33c12.4	91	36.993	Astatotilapia_calliptera
ENSDARG00000057890	si:dkey-33c12.4	65	34.043	ENSACLG00000010188	zgc:123010	70	33.886	Astatotilapia_calliptera
ENSDARG00000057890	si:dkey-33c12.4	65	34.300	ENSAMXG00000041967	zgc:123010	66	34.307	Astyanax_mexicanus
ENSDARG00000057890	si:dkey-33c12.4	99	54.914	ENSAMXG00000010871	si:dkey-33c12.4	99	54.037	Astyanax_mexicanus
ENSDARG00000057890	si:dkey-33c12.4	87	34.237	ENSCPBG00000024454	-	82	34.596	Chrysemys_picta_bellii
ENSDARG00000057890	si:dkey-33c12.4	76	39.815	ENSCSEG00000002755	-	84	40.200	Cynoglossus_semilaevis
ENSDARG00000057890	si:dkey-33c12.4	98	36.055	ENSCVAG00000006564	-	96	36.672	Cyprinodon_variegatus
ENSDARG00000057890	si:dkey-33c12.4	57	46.269	ENSCVAG00000004187	-	65	46.269	Cyprinodon_variegatus
ENSDARG00000057890	si:dkey-33c12.4	72	33.475	ENSCVAG00000013288	zgc:123010	86	32.677	Cyprinodon_variegatus
ENSDARG00000057890	si:dkey-33c12.4	74	30.250	ENSEBUG00000001368	-	54	33.429	Eptatretus_burgeri
ENSDARG00000057890	si:dkey-33c12.4	85	40.489	ENSELUG00000001633	-	88	40.838	Esox_lucius
ENSDARG00000057890	si:dkey-33c12.4	65	34.368	ENSELUG00000022008	zgc:123010	85	31.490	Esox_lucius
ENSDARG00000057890	si:dkey-33c12.4	99	41.815	ENSELUG00000002009	si:dkey-33c12.4	99	44.279	Esox_lucius
ENSDARG00000057890	si:dkey-33c12.4	65	43.439	ENSFHEG00000009983	-	61	46.448	Fundulus_heteroclitus
ENSDARG00000057890	si:dkey-33c12.4	65	34.272	ENSFHEG00000002306	zgc:123010	69	34.123	Fundulus_heteroclitus
ENSDARG00000057890	si:dkey-33c12.4	53	45.609	ENSFHEG00000005521	si:dkey-33c12.4	98	36.533	Fundulus_heteroclitus
ENSDARG00000057890	si:dkey-33c12.4	65	31.504	ENSGMOG00000018473	zgc:123010	95	31.742	Gadus_morhua
ENSDARG00000057890	si:dkey-33c12.4	73	32.773	ENSGALG00000036747	TTC31	86	32.661	Gallus_gallus
ENSDARG00000057890	si:dkey-33c12.4	82	31.354	ENSGAFG00000009373	zgc:123010	85	31.115	Gambusia_affinis
ENSDARG00000057890	si:dkey-33c12.4	55	43.700	ENSGAFG00000017596	si:dkey-33c12.4	96	36.170	Gambusia_affinis
ENSDARG00000057890	si:dkey-33c12.4	64	42.257	ENSGAFG00000016594	-	67	43.341	Gambusia_affinis
ENSDARG00000057890	si:dkey-33c12.4	52	44.242	ENSGACG00000004936	-	92	43.750	Gasterosteus_aculeatus
ENSDARG00000057890	si:dkey-33c12.4	65	33.649	ENSGACG00000007620	zgc:123010	96	33.726	Gasterosteus_aculeatus
ENSDARG00000057890	si:dkey-33c12.4	55	42.744	ENSHBUG00000010735	si:dkey-33c12.4	96	35.410	Haplochromis_burtoni
ENSDARG00000057890	si:dkey-33c12.4	72	30.105	ENSHBUG00000016720	-	85	30.375	Haplochromis_burtoni
ENSDARG00000057890	si:dkey-33c12.4	99	53.632	ENSIPUG00000005998	si:dkey-33c12.4	100	53.692	Ictalurus_punctatus
ENSDARG00000057890	si:dkey-33c12.4	99	36.141	ENSKMAG00000016610	si:dkey-33c12.4	98	35.988	Kryptolebias_marmoratus
ENSDARG00000057890	si:dkey-33c12.4	66	43.777	ENSKMAG00000006468	-	63	47.970	Kryptolebias_marmoratus
ENSDARG00000057890	si:dkey-33c12.4	68	34.228	ENSKMAG00000021350	zgc:123010	68	35.000	Kryptolebias_marmoratus
ENSDARG00000057890	si:dkey-33c12.4	82	39.894	ENSLBEG00000028046	-	66	43.056	Labrus_bergylta
ENSDARG00000057890	si:dkey-33c12.4	60	40.500	ENSLBEG00000021088	-	96	34.750	Labrus_bergylta
ENSDARG00000057890	si:dkey-33c12.4	68	33.784	ENSLBEG00000023984	zgc:123010	68	34.053	Labrus_bergylta
ENSDARG00000057890	si:dkey-33c12.4	55	33.242	ENSLBEG00000013518	-	64	33.242	Labrus_bergylta
ENSDARG00000057890	si:dkey-33c12.4	52	40.000	ENSLBEG00000017203	-	96	35.846	Labrus_bergylta
ENSDARG00000057890	si:dkey-33c12.4	88	40.174	ENSLACG00000004602	-	94	40.357	Latimeria_chalumnae
ENSDARG00000057890	si:dkey-33c12.4	77	31.141	ENSLACG00000009001	zgc:123010	77	34.321	Latimeria_chalumnae
ENSDARG00000057890	si:dkey-33c12.4	85	48.168	ENSLOCG00000001861	-	85	47.887	Lepisosteus_oculatus
ENSDARG00000057890	si:dkey-33c12.4	65	33.176	ENSLOCG00000008967	zgc:123010	84	30.156	Lepisosteus_oculatus
ENSDARG00000057890	si:dkey-33c12.4	54	33.239	ENSMAMG00000003439	-	86	33.239	Mastacembelus_armatus
ENSDARG00000057890	si:dkey-33c12.4	52	34.111	ENSMAMG00000002377	-	71	34.111	Mastacembelus_armatus
ENSDARG00000057890	si:dkey-33c12.4	64	31.971	ENSMAMG00000001145	zgc:123010	84	31.731	Mastacembelus_armatus
ENSDARG00000057890	si:dkey-33c12.4	55	33.520	ENSMAMG00000003394	-	86	33.520	Mastacembelus_armatus
ENSDARG00000057890	si:dkey-33c12.4	53	34.302	ENSMAMG00000002460	-	74	34.402	Mastacembelus_armatus
ENSDARG00000057890	si:dkey-33c12.4	97	38.346	ENSMAMG00000000111	si:dkey-33c12.4	95	39.104	Mastacembelus_armatus
ENSDARG00000057890	si:dkey-33c12.4	77	39.925	ENSMAMG00000004311	-	64	44.361	Mastacembelus_armatus
ENSDARG00000057890	si:dkey-33c12.4	69	44.515	ENSMZEG00005000585	-	77	43.724	Maylandia_zebra
ENSDARG00000057890	si:dkey-33c12.4	65	32.000	ENSMZEG00005014740	-	90	32.471	Maylandia_zebra
ENSDARG00000057890	si:dkey-33c12.4	55	42.632	ENSMZEG00005014276	si:dkey-33c12.4	96	35.357	Maylandia_zebra
ENSDARG00000057890	si:dkey-33c12.4	65	34.043	ENSMZEG00005027733	zgc:123010	70	33.886	Maylandia_zebra
ENSDARG00000057890	si:dkey-33c12.4	52	35.015	ENSMMOG00000010544	zgc:123010	65	35.000	Mola_mola
ENSDARG00000057890	si:dkey-33c12.4	65	33.570	ENSMALG00000017698	zgc:123010	68	33.573	Monopterus_albus
ENSDARG00000057890	si:dkey-33c12.4	76	42.777	ENSMALG00000003167	-	59	45.960	Monopterus_albus
ENSDARG00000057890	si:dkey-33c12.4	97	35.489	ENSMALG00000002265	si:dkey-33c12.4	96	36.491	Monopterus_albus
ENSDARG00000057890	si:dkey-33c12.4	68	31.891	ENSNBRG00000021157	zgc:123010	79	31.894	Neolamprologus_brichardi
ENSDARG00000057890	si:dkey-33c12.4	70	44.328	ENSONIG00000007538	-	92	51.786	Oreochromis_niloticus
ENSDARG00000057890	si:dkey-33c12.4	74	31.656	ENSONIG00000018353	zgc:123010	92	30.192	Oreochromis_niloticus
ENSDARG00000057890	si:dkey-33c12.4	50	34.441	ENSONIG00000000297	-	97	34.441	Oreochromis_niloticus
ENSDARG00000057890	si:dkey-33c12.4	53	44.311	ENSONIG00000012263	-	94	44.311	Oreochromis_niloticus
ENSDARG00000057890	si:dkey-33c12.4	61	32.984	ENSORLG00000007675	zgc:123010	55	36.120	Oryzias_latipes
ENSDARG00000057890	si:dkey-33c12.4	75	43.056	ENSORLG00000030385	-	60	46.392	Oryzias_latipes
ENSDARG00000057890	si:dkey-33c12.4	53	41.714	ENSORLG00000029651	si:dkey-33c12.4	62	39.642	Oryzias_latipes
ENSDARG00000057890	si:dkey-33c12.4	61	33.246	ENSORLG00020003457	zgc:123010	55	36.455	Oryzias_latipes_hni
ENSDARG00000057890	si:dkey-33c12.4	59	38.734	ENSORLG00020008750	si:dkey-33c12.4	58	39.642	Oryzias_latipes_hni
ENSDARG00000057890	si:dkey-33c12.4	69	33.184	ENSORLG00015008373	zgc:123010	62	35.813	Oryzias_latipes_hsok
ENSDARG00000057890	si:dkey-33c12.4	75	42.262	ENSORLG00015008400	-	60	46.392	Oryzias_latipes_hsok
ENSDARG00000057890	si:dkey-33c12.4	99	30.861	ENSOMEG00000008913	-	53	42.693	Oryzias_melastigma
ENSDARG00000057890	si:dkey-33c12.4	75	42.772	ENSOMEG00000009428	-	61	46.253	Oryzias_melastigma
ENSDARG00000057890	si:dkey-33c12.4	82	31.698	ENSOMEG00000003408	zgc:123010	69	34.135	Oryzias_melastigma
ENSDARG00000057890	si:dkey-33c12.4	64	31.707	ENSPKIG00000015521	zgc:123010	78	31.707	Paramormyrops_kingsleyae
ENSDARG00000057890	si:dkey-33c12.4	92	47.240	ENSPKIG00000011819	-	84	48.592	Paramormyrops_kingsleyae
ENSDARG00000057890	si:dkey-33c12.4	65	31.144	ENSPMGG00000020251	zgc:123010	79	30.976	Periophthalmus_magnuspinnatus
ENSDARG00000057890	si:dkey-33c12.4	50	33.542	ENSPMAG00000004544	zgc:123010	99	33.542	Petromyzon_marinus
ENSDARG00000057890	si:dkey-33c12.4	67	41.348	ENSPFOG00000017092	-	93	41.075	Poecilia_formosa
ENSDARG00000057890	si:dkey-33c12.4	98	36.818	ENSPFOG00000009143	si:dkey-33c12.4	96	37.252	Poecilia_formosa
ENSDARG00000057890	si:dkey-33c12.4	65	33.333	ENSPFOG00000001073	zgc:123010	69	33.333	Poecilia_formosa
ENSDARG00000057890	si:dkey-33c12.4	65	33.333	ENSPLAG00000007711	zgc:123010	69	33.333	Poecilia_latipinna
ENSDARG00000057890	si:dkey-33c12.4	53	45.531	ENSPLAG00000022537	si:dkey-33c12.4	98	37.713	Poecilia_latipinna
ENSDARG00000057890	si:dkey-33c12.4	59	44.258	ENSPMEG00000009905	-	63	45.570	Poecilia_mexicana
ENSDARG00000057890	si:dkey-33c12.4	72	32.632	ENSPMEG00000005092	zgc:123010	85	31.507	Poecilia_mexicana
ENSDARG00000057890	si:dkey-33c12.4	98	34.918	ENSPMEG00000015590	si:dkey-33c12.4	96	37.405	Poecilia_mexicana
ENSDARG00000057890	si:dkey-33c12.4	59	43.437	ENSPREG00000016861	-	64	44.810	Poecilia_reticulata
ENSDARG00000057890	si:dkey-33c12.4	52	35.843	ENSPREG00000019587	zgc:123010	67	35.843	Poecilia_reticulata
ENSDARG00000057890	si:dkey-33c12.4	50	34.302	ENSPNYG00000023304	-	72	34.302	Pundamilia_nyererei
ENSDARG00000057890	si:dkey-33c12.4	55	42.632	ENSPNYG00000018262	si:dkey-33c12.4	96	35.357	Pundamilia_nyererei
ENSDARG00000057890	si:dkey-33c12.4	69	42.827	ENSPNYG00000001047	-	77	43.424	Pundamilia_nyererei
ENSDARG00000057890	si:dkey-33c12.4	65	33.806	ENSPNYG00000007893	zgc:123010	70	33.649	Pundamilia_nyererei
ENSDARG00000057890	si:dkey-33c12.4	65	35.351	ENSPNAG00000007579	zgc:123010	69	35.366	Pygocentrus_nattereri
ENSDARG00000057890	si:dkey-33c12.4	99	55.108	ENSPNAG00000018386	si:dkey-33c12.4	99	54.799	Pygocentrus_nattereri
ENSDARG00000057890	si:dkey-33c12.4	88	47.595	ENSSFOG00015005186	-	88	49.910	Scleropages_formosus
ENSDARG00000057890	si:dkey-33c12.4	74	31.687	ENSSFOG00015021394	zgc:123010	93	31.434	Scleropages_formosus
ENSDARG00000057890	si:dkey-33c12.4	84	45.126	ENSSFOG00015009199	-	82	43.542	Scleropages_formosus
ENSDARG00000057890	si:dkey-33c12.4	97	37.348	ENSSMAG00000008147	si:dkey-33c12.4	96	37.234	Scophthalmus_maximus
ENSDARG00000057890	si:dkey-33c12.4	89	39.841	ENSSMAG00000010960	-	74	42.769	Scophthalmus_maximus
ENSDARG00000057890	si:dkey-33c12.4	67	33.030	ENSSMAG00000002904	zgc:123010	72	33.333	Scophthalmus_maximus
ENSDARG00000057890	si:dkey-33c12.4	66	30.476	ENSSMAG00000021096	-	68	30.348	Scophthalmus_maximus
ENSDARG00000057890	si:dkey-33c12.4	58	48.166	ENSSDUG00000010976	-	75	45.342	Seriola_dumerili
ENSDARG00000057890	si:dkey-33c12.4	74	31.656	ENSSDUG00000008651	zgc:123010	68	33.333	Seriola_dumerili
ENSDARG00000057890	si:dkey-33c12.4	97	37.366	ENSSDUG00000003213	si:dkey-33c12.4	96	38.710	Seriola_dumerili
ENSDARG00000057890	si:dkey-33c12.4	64	30.095	ENSSDUG00000014026	-	71	30.095	Seriola_dumerili
ENSDARG00000057890	si:dkey-33c12.4	65	41.855	ENSSLDG00000009448	si:dkey-33c12.4	96	38.402	Seriola_lalandi_dorsalis
ENSDARG00000057890	si:dkey-33c12.4	82	30.813	ENSSLDG00000019386	zgc:123010	71	33.333	Seriola_lalandi_dorsalis
ENSDARG00000057890	si:dkey-33c12.4	58	48.293	ENSSLDG00000012846	-	66	48.130	Seriola_lalandi_dorsalis
ENSDARG00000057890	si:dkey-33c12.4	89	37.220	ENSSPAG00000004843	-	60	46.310	Stegastes_partitus
ENSDARG00000057890	si:dkey-33c12.4	68	33.333	ENSSPAG00000013621	zgc:123010	68	34.532	Stegastes_partitus
ENSDARG00000057890	si:dkey-33c12.4	53	47.159	ENSSPAG00000022577	-	95	39.231	Stegastes_partitus
ENSDARG00000057890	si:dkey-33c12.4	52	40.456	ENSTRUG00000022374	si:dkey-33c12.4	52	39.943	Takifugu_rubripes
ENSDARG00000057890	si:dkey-33c12.4	82	38.404	ENSTRUG00000000057	-	76	41.126	Takifugu_rubripes
ENSDARG00000057890	si:dkey-33c12.4	65	34.279	ENSTRUG00000024824	zgc:123010	69	34.293	Takifugu_rubripes
ENSDARG00000057890	si:dkey-33c12.4	52	42.121	ENSTNIG00000010542	-	95	41.349	Tetraodon_nigroviridis
ENSDARG00000057890	si:dkey-33c12.4	52	34.402	ENSTNIG00000001303	zgc:123010	91	34.402	Tetraodon_nigroviridis
ENSDARG00000057890	si:dkey-33c12.4	51	37.346	ENSXETG00000033896	-	99	37.346	Xenopus_tropicalis
ENSDARG00000057890	si:dkey-33c12.4	71	30.426	ENSXCOG00000012281	zgc:123010	73	35.756	Xiphophorus_couchianus
ENSDARG00000057890	si:dkey-33c12.4	72	32.421	ENSXMAG00000002598	zgc:123010	69	33.333	Xiphophorus_maculatus
ENSDARG00000057890	si:dkey-33c12.4	98	35.455	ENSXMAG00000018535	si:dkey-33c12.4	96	35.375	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function