EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000057929 (Gene tree)
Gene ID: 568328
Gene Symbol: naf1
Alias: fd12g08|si:dkey-22l11.5|wu:fd12g08
Full Name: nuclear assembly factor 1 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 8781 bases
Position: chr4:10003523-10012303
Accession: ZDB-GENE-030131-4546
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000114221	Gar1	PF04410.14	1.8e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000080689	-	668	-	-	- (aa)	-	-
ENSDART00000148105	-	1792	XM_021475221	ENSDARP00000114221	503 (aa)	XP_021330896	F1QXL6

Gene Model

Click here to download ENSDARG00000057929's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000057929's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000057929	naf1	54	46.875	ENSG00000145414	NAF1	95	77.500	Homo_sapiens
ENSDARG00000057929	naf1	50	47.426	ENSAMEG00000014688	NAF1	65	45.223	Ailuropoda_melanoleuca
ENSDARG00000057929	naf1	54	47.405	ENSANAG00000025253	NAF1	93	77.500	Aotus_nancymaae
ENSDARG00000057929	naf1	75	54.188	ENSAMXG00000030034	naf1	86	51.818	Astyanax_mexicanus
ENSDARG00000057929	naf1	54	44.409	ENSCJAG00000012406	NAF1	95	77.500	Callithrix_jacchus
ENSDARG00000057929	naf1	60	47.440	ENSCAFG00020005334	NAF1	75	57.547	Canis_lupus_dingo
ENSDARG00000057929	naf1	54	46.237	ENSCAPG00000017838	NAF1	79	46.278	Cavia_aperea
ENSDARG00000057929	naf1	54	46.595	ENSCPOG00000010331	NAF1	60	47.059	Cavia_porcellus
ENSDARG00000057929	naf1	54	47.405	ENSCCAG00000030023	NAF1	95	77.500	Cebus_capucinus
ENSDARG00000057929	naf1	54	47.183	ENSCATG00000022663	NAF1	95	77.500	Cercocebus_atys
ENSDARG00000057929	naf1	53	46.619	ENSCLAG00000017209	NAF1	71	43.293	Chinchilla_lanigera
ENSDARG00000057929	naf1	54	47.183	ENSCSAG00000003199	NAF1	57	47.719	Chlorocebus_sabaeus
ENSDARG00000057929	naf1	54	47.183	ENSCANG00000039151	NAF1	95	77.500	Colobus_angolensis_palliatus
ENSDARG00000057929	naf1	54	47.203	ENSCGRG00001018484	Naf1	72	43.373	Cricetulus_griseus_chok1gshd
ENSDARG00000057929	naf1	54	47.203	ENSCGRG00000001742	Naf1	85	46.512	Cricetulus_griseus_crigri
ENSDARG00000057929	naf1	54	47.766	ENSDORG00000011327	Naf1	67	46.965	Dipodomys_ordii
ENSDARG00000057929	naf1	54	33.876	FBgn0032701	CG10341	59	34.132	Drosophila_melanogaster
ENSDARG00000057929	naf1	50	48.718	ENSEASG00005022201	NAF1	56	46.713	Equus_asinus_asinus
ENSDARG00000057929	naf1	54	47.619	ENSECAG00000016738	NAF1	60	46.452	Equus_caballus
ENSDARG00000057929	naf1	54	46.875	ENSGGOG00000000894	NAF1	95	77.500	Gorilla_gorilla
ENSDARG00000057929	naf1	61	51.667	ENSHGLG00000014899	NAF1	62	48.029	Heterocephalus_glaber_female
ENSDARG00000057929	naf1	61	51.667	ENSHGLG00100007507	NAF1	62	48.029	Heterocephalus_glaber_male
ENSDARG00000057929	naf1	55	59.364	ENSIPUG00000019009	naf1	68	58.166	Ictalurus_punctatus
ENSDARG00000057929	naf1	54	48.057	ENSSTOG00000023858	NAF1	62	46.205	Ictidomys_tridecemlineatus
ENSDARG00000057929	naf1	54	47.703	ENSJJAG00000012147	-	84	46.326	Jaculus_jaculus
ENSDARG00000057929	naf1	55	44.765	ENSLBEG00000020414	-	60	46.154	Labrus_bergylta
ENSDARG00000057929	naf1	54	47.183	ENSMFAG00000040952	NAF1	95	77.500	Macaca_fascicularis
ENSDARG00000057929	naf1	54	47.183	ENSMMUG00000001717	NAF1	95	77.500	Macaca_mulatta
ENSDARG00000057929	naf1	54	47.183	ENSMNEG00000032677	NAF1	95	77.500	Macaca_nemestrina
ENSDARG00000057929	naf1	54	47.535	ENSMLEG00000035330	NAF1	95	77.500	Mandrillus_leucophaeus
ENSDARG00000057929	naf1	54	47.917	ENSMICG00000038661	NAF1	91	71.795	Microcebus_murinus
ENSDARG00000057929	naf1	54	45.775	ENSMOCG00000010360	Naf1	72	43.072	Microtus_ochrogaster
ENSDARG00000057929	naf1	63	45.645	MGP_CAROLIEiJ_G0031097	Naf1	55	55.825	Mus_caroli
ENSDARG00000057929	naf1	62	58.333	ENSMUSG00000014907	Naf1	52	57.843	Mus_musculus
ENSDARG00000057929	naf1	54	46.127	MGP_PahariEiJ_G0021563	-	60	45.902	Mus_pahari
ENSDARG00000057929	naf1	56	45.675	MGP_SPRETEiJ_G0032213	-	60	46.237	Mus_spretus
ENSDARG00000057929	naf1	50	49.064	ENSMPUG00000001861	NAF1	58	47.440	Mustela_putorius_furo
ENSDARG00000057929	naf1	54	47.552	ENSNGAG00000023833	Naf1	75	46.795	Nannospalax_galili
ENSDARG00000057929	naf1	54	47.405	ENSODEG00000006528	NAF1	67	45.455	Octodon_degus
ENSDARG00000057929	naf1	63	46.753	ENSOCUG00000000485	NAF1	66	45.988	Oryctolagus_cuniculus
ENSDARG00000057929	naf1	73	36.508	ENSOMEG00000021322	-	65	42.105	Oryzias_melastigma
ENSDARG00000057929	naf1	52	48.214	ENSOARG00000013716	NAF1	63	46.535	Ovis_aries
ENSDARG00000057929	naf1	54	47.222	ENSPPAG00000034674	NAF1	95	77.500	Pan_paniscus
ENSDARG00000057929	naf1	54	47.222	ENSPTRG00000016560	NAF1	95	77.500	Pan_troglodytes
ENSDARG00000057929	naf1	54	46.831	ENSPANG00000015574	NAF1	95	77.500	Papio_anubis
ENSDARG00000057929	naf1	72	48.370	ENSPKIG00000019687	NAF1	59	53.481	Paramormyrops_kingsleyae
ENSDARG00000057929	naf1	50	49.259	ENSPEMG00000014321	Naf1	88	45.593	Peromyscus_maniculatus_bairdii
ENSDARG00000057929	naf1	61	44.136	ENSPFOG00000010705	-	77	46.154	Poecilia_formosa
ENSDARG00000057929	naf1	52	47.925	ENSPMEG00000004437	-	61	45.485	Poecilia_mexicana
ENSDARG00000057929	naf1	67	59.710	ENSPNAG00000001219	naf1	65	55.779	Pygocentrus_nattereri
ENSDARG00000057929	naf1	54	46.341	ENSRNOG00000026403	Naf1	68	47.143	Rattus_norvegicus
ENSDARG00000057929	naf1	54	46.831	ENSRBIG00000030027	NAF1	95	77.500	Rhinopithecus_bieti
ENSDARG00000057929	naf1	54	46.831	ENSRROG00000040912	NAF1	95	77.500	Rhinopithecus_roxellana
ENSDARG00000057929	naf1	54	47.751	ENSSBOG00000002085	NAF1	95	77.500	Saimiri_boliviensis_boliviensis
ENSDARG00000057929	naf1	57	42.623	ENSSDUG00000005987	-	73	44.839	Seriola_dumerili
ENSDARG00000057929	naf1	52	48.519	ENSSSCG00000008887	NAF1	56	48.519	Sus_scrofa
ENSDARG00000057929	naf1	54	46.367	ENSTTRG00000010106	NAF1	66	45.246	Tursiops_truncatus
ENSDARG00000057929	naf1	54	42.679	ENSUAMG00000017043	NAF1	64	45.338	Ursus_americanus
ENSDARG00000057929	naf1	60	47.099	ENSVVUG00000022303	NAF1	92	56.604	Vulpes_vulpes
ENSDARG00000057929	naf1	52	49.057	ENSXMAG00000011494	-	60	46.154	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000493	box H/ACA snoRNP assembly	21873635.	IBA	Process
GO:0000493	box H/ACA snoRNP assembly	-	IEA	Process
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005732	small nucleolar ribonucleoprotein complex	21873635.	IBA	Component
GO:0005732	small nucleolar ribonucleoprotein complex	-	IEA	Component
GO:0042254	ribosome biogenesis	21873635.	IBA	Process
GO:0042254	ribosome biogenesis	-	IEA	Process