EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000057939 (Gene tree)
Gene ID: 334191
Gene Symbol: ythdf3
Alias: wu:fi35c09|zgc:55441
Full Name: YTH N(6)-methyladenosine RNA binding protein 3
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 14600 bases
Position: chr24:24285751-24300350
Accession: ZDB-GENE-030131-6123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000109970	YTH	PF04146.15	5.9e-40	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000122294	-	3099	-	ENSDARP00000109970	600 (aa)	-	E7FAP0

Gene Model

Click here to download ENSDARG00000057939's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000057939's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000057939	ythdf3	98	61.983	ENSDARG00000014498	ythdf2	94	60.804

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000057939	ythdf3	100	76.683	ENSG00000185728	YTHDF3	100	97.297	Homo_sapiens
ENSDARG00000057939	ythdf3	100	81.699	ENSAPOG00000024006	ythdf3	100	82.353	Acanthochromis_polyacanthus
ENSDARG00000057939	ythdf3	100	75.941	ENSAMEG00000018113	YTHDF3	97	78.130	Ailuropoda_melanoleuca
ENSDARG00000057939	ythdf3	100	81.536	ENSAOCG00000000723	ythdf3	100	82.026	Amphiprion_ocellaris
ENSDARG00000057939	ythdf3	100	81.046	ENSAPEG00000020352	ythdf3	100	81.699	Amphiprion_percula
ENSDARG00000057939	ythdf3	89	92.821	ENSATEG00000011478	ythdf3	91	94.972	Anabas_testudineus
ENSDARG00000057939	ythdf3	100	76.596	ENSANAG00000037920	YTHDF3	100	78.734	Aotus_nancymaae
ENSDARG00000057939	ythdf3	98	82.975	ENSAMXG00000030366	ythdf3	100	88.235	Astyanax_mexicanus
ENSDARG00000057939	ythdf3	100	76.105	ENSBTAG00000018557	YTHDF3	100	79.770	Bos_taurus
ENSDARG00000057939	ythdf3	100	76.596	ENSCJAG00000009217	YTHDF3	100	78.734	Callithrix_jacchus
ENSDARG00000057939	ythdf3	99	75.698	ENSCAFG00000007215	YTHDF3	97	77.796	Canis_familiaris
ENSDARG00000057939	ythdf3	100	76.268	ENSCAFG00020015995	YTHDF3	100	78.409	Canis_lupus_dingo
ENSDARG00000057939	ythdf3	100	75.941	ENSCHIG00000026460	YTHDF3	100	79.605	Capra_hircus
ENSDARG00000057939	ythdf3	97	75.717	ENSTSYG00000009117	YTHDF3	96	78.094	Carlito_syrichta
ENSDARG00000057939	ythdf3	99	75.456	ENSCAPG00000014006	YTHDF3	100	77.632	Cavia_aperea
ENSDARG00000057939	ythdf3	100	76.268	ENSCPOG00000002961	YTHDF3	100	78.409	Cavia_porcellus
ENSDARG00000057939	ythdf3	100	76.432	ENSCCAG00000022316	YTHDF3	100	78.571	Cebus_capucinus
ENSDARG00000057939	ythdf3	100	76.432	ENSCATG00000038669	YTHDF3	100	78.571	Cercocebus_atys
ENSDARG00000057939	ythdf3	99	75.954	ENSCLAG00000002515	YTHDF3	100	78.125	Chinchilla_lanigera
ENSDARG00000057939	ythdf3	100	76.432	ENSCSAG00000014280	YTHDF3	100	78.571	Chlorocebus_sabaeus
ENSDARG00000057939	ythdf3	99	74.752	ENSCHOG00000010194	YTHDF3	98	76.795	Choloepus_hoffmanni
ENSDARG00000057939	ythdf3	100	76.432	ENSCANG00000032631	YTHDF3	100	78.571	Colobus_angolensis_palliatus
ENSDARG00000057939	ythdf3	100	76.432	ENSCGRG00001021204	Ythdf3	100	78.571	Cricetulus_griseus_chok1gshd
ENSDARG00000057939	ythdf3	69	54.106	ENSCGRG00000008289	-	71	66.667	Cricetulus_griseus_crigri
ENSDARG00000057939	ythdf3	99	80.402	ENSCGRG00000005613	-	100	77.961	Cricetulus_griseus_crigri
ENSDARG00000057939	ythdf3	100	83.470	ENSCSEG00000014861	ythdf3	99	81.566	Cynoglossus_semilaevis
ENSDARG00000057939	ythdf3	100	79.902	ENSCVAG00000018114	ythdf3	100	79.051	Cyprinodon_variegatus
ENSDARG00000057939	ythdf3	100	75.610	ENSDNOG00000037156	YTHDF3	96	78.130	Dasypus_novemcinctus
ENSDARG00000057939	ythdf3	100	76.432	ENSDORG00000014699	Ythdf3	100	78.734	Dipodomys_ordii
ENSDARG00000057939	ythdf3	100	76.432	ENSEASG00005016224	YTHDF3	100	78.571	Equus_asinus_asinus
ENSDARG00000057939	ythdf3	100	76.432	ENSECAG00000011093	YTHDF3	100	78.571	Equus_caballus
ENSDARG00000057939	ythdf3	100	80.682	ENSELUG00000014824	ythdf3	100	80.844	Esox_lucius
ENSDARG00000057939	ythdf3	100	76.759	ENSFCAG00000025314	YTHDF3	100	78.571	Felis_catus
ENSDARG00000057939	ythdf3	92	71.607	ENSFALG00000005503	YTHDF3	100	81.408	Ficedula_albicollis
ENSDARG00000057939	ythdf3	99	75.954	ENSFDAG00000002735	YTHDF3	100	78.125	Fukomys_damarensis
ENSDARG00000057939	ythdf3	100	80.556	ENSFHEG00000016395	ythdf3	100	79.187	Fundulus_heteroclitus
ENSDARG00000057939	ythdf3	100	77.483	ENSGMOG00000014950	ythdf3	100	74.188	Gadus_morhua
ENSDARG00000057939	ythdf3	98	72.047	ENSGALG00000039774	YTHDF3	100	81.818	Gallus_gallus
ENSDARG00000057939	ythdf3	100	80.556	ENSGAFG00000006529	ythdf3	100	78.699	Gambusia_affinis
ENSDARG00000057939	ythdf3	99	82.178	ENSGACG00000002998	ythdf3	97	81.494	Gasterosteus_aculeatus
ENSDARG00000057939	ythdf3	98	75.292	ENSGGOG00000027681	YTHDF3	100	77.876	Gorilla_gorilla
ENSDARG00000057939	ythdf3	100	76.432	ENSHGLG00000009954	YTHDF3	100	78.571	Heterocephalus_glaber_female
ENSDARG00000057939	ythdf3	99	76.285	ENSHGLG00100012403	YTHDF3	100	78.454	Heterocephalus_glaber_male
ENSDARG00000057939	ythdf3	99	77.090	ENSHCOG00000015277	ythdf3	95	76.117	Hippocampus_comes
ENSDARG00000057939	ythdf3	100	87.022	ENSIPUG00000014157	YTHDF1	100	87.354	Ictalurus_punctatus
ENSDARG00000057939	ythdf3	100	76.268	ENSSTOG00000027792	YTHDF3	100	78.409	Ictidomys_tridecemlineatus
ENSDARG00000057939	ythdf3	99	76.119	ENSJJAG00000017742	Ythdf3	100	78.125	Jaculus_jaculus
ENSDARG00000057939	ythdf3	100	77.010	ENSKMAG00000008447	ythdf3	100	80.227	Kryptolebias_marmoratus
ENSDARG00000057939	ythdf3	100	75.241	ENSLAFG00000016052	YTHDF3	100	76.874	Loxodonta_africana
ENSDARG00000057939	ythdf3	100	76.432	ENSMFAG00000043451	YTHDF3	100	78.571	Macaca_fascicularis
ENSDARG00000057939	ythdf3	100	76.432	ENSMMUG00000006729	YTHDF3	100	78.571	Macaca_mulatta
ENSDARG00000057939	ythdf3	100	76.432	ENSMNEG00000031200	YTHDF3	100	78.571	Macaca_nemestrina
ENSDARG00000057939	ythdf3	100	76.432	ENSMLEG00000036763	YTHDF3	100	78.571	Mandrillus_leucophaeus
ENSDARG00000057939	ythdf3	97	79.760	ENSMAMG00000000414	ythdf3	100	75.585	Mastacembelus_armatus
ENSDARG00000057939	ythdf3	98	72.651	ENSMGAG00000011168	YTHDF3	99	81.773	Meleagris_gallopavo
ENSDARG00000057939	ythdf3	68	72.304	ENSMAUG00000012560	Ythdf3	97	70.098	Mesocricetus_auratus
ENSDARG00000057939	ythdf3	99	75.993	ENSMICG00000036869	-	96	78.261	Microcebus_murinus
ENSDARG00000057939	ythdf3	69	58.454	ENSMICG00000009379	-	100	59.903	Microcebus_murinus
ENSDARG00000057939	ythdf3	99	75.622	ENSMOCG00000011947	Ythdf3	100	77.796	Microtus_ochrogaster
ENSDARG00000057939	ythdf3	97	71.724	ENSMMOG00000003402	ythdf3	90	93.855	Mola_mola
ENSDARG00000057939	ythdf3	98	72.666	ENSMALG00000000147	ythdf3	89	93.855	Monopterus_albus
ENSDARG00000057939	ythdf3	100	76.268	MGP_CAROLIEiJ_G0024863	Ythdf3	100	78.409	Mus_caroli
ENSDARG00000057939	ythdf3	100	76.268	ENSMUSG00000047213	Ythdf3	100	78.409	Mus_musculus
ENSDARG00000057939	ythdf3	100	76.268	MGP_PahariEiJ_G0026310	Ythdf3	100	79.835	Mus_pahari
ENSDARG00000057939	ythdf3	100	78.843	MGP_SPRETEiJ_G0025794	Ythdf3	100	78.247	Mus_spretus
ENSDARG00000057939	ythdf3	100	76.596	ENSMPUG00000009857	YTHDF3	100	78.734	Mustela_putorius_furo
ENSDARG00000057939	ythdf3	99	76.606	ENSMLUG00000006541	YTHDF3	97	78.297	Myotis_lucifugus
ENSDARG00000057939	ythdf3	94	73.958	ENSNGAG00000018434	Ythdf3	93	77.495	Nannospalax_galili
ENSDARG00000057939	ythdf3	85	86.842	ENSNBRG00000023433	ythdf3	97	80.662	Neolamprologus_brichardi
ENSDARG00000057939	ythdf3	50	83.056	ENSNLEG00000003872	YTHDF3	100	78.409	Nomascus_leucogenys
ENSDARG00000057939	ythdf3	99	75.290	ENSODEG00000002033	YTHDF3	100	77.796	Octodon_degus
ENSDARG00000057939	ythdf3	100	75.201	ENSOCUG00000008723	YTHDF3	100	76.997	Oryctolagus_cuniculus
ENSDARG00000057939	ythdf3	100	80.687	ENSORLG00000008640	ythdf3	100	79.378	Oryzias_latipes
ENSDARG00000057939	ythdf3	100	80.524	ENSORLG00020014684	ythdf3	100	79.214	Oryzias_latipes_hni
ENSDARG00000057939	ythdf3	100	81.046	ENSORLG00015014880	ythdf3	100	79.214	Oryzias_latipes_hsok
ENSDARG00000057939	ythdf3	100	80.229	ENSOMEG00000008212	ythdf3	100	80.196	Oryzias_melastigma
ENSDARG00000057939	ythdf3	99	75.738	ENSOGAG00000002302	YTHDF3	97	77.963	Otolemur_garnettii
ENSDARG00000057939	ythdf3	96	75.128	ENSOARG00000016882	YTHDF3	96	78.938	Ovis_aries
ENSDARG00000057939	ythdf3	100	76.268	ENSPPAG00000043483	YTHDF3	100	78.409	Pan_paniscus
ENSDARG00000057939	ythdf3	100	76.759	ENSPPRG00000004665	YTHDF3	100	78.571	Panthera_pardus
ENSDARG00000057939	ythdf3	97	76.560	ENSPTIG00000021537	YTHDF3	100	77.876	Panthera_tigris_altaica
ENSDARG00000057939	ythdf3	100	76.432	ENSPTRG00000049135	YTHDF3	100	78.571	Pan_troglodytes
ENSDARG00000057939	ythdf3	100	76.432	ENSPANG00000008030	YTHDF3	100	78.571	Papio_anubis
ENSDARG00000057939	ythdf3	56	86.567	ENSPKIG00000008298	ythdf3	99	81.926	Paramormyrops_kingsleyae
ENSDARG00000057939	ythdf3	99	76.119	ENSPEMG00000020975	Ythdf3	100	78.289	Peromyscus_maniculatus_bairdii
ENSDARG00000057939	ythdf3	100	80.882	ENSPFOG00000006082	ythdf3	100	79.024	Poecilia_formosa
ENSDARG00000057939	ythdf3	100	81.046	ENSPLAG00000006902	ythdf3	100	79.187	Poecilia_latipinna
ENSDARG00000057939	ythdf3	100	80.882	ENSPMEG00000012922	ythdf3	100	79.024	Poecilia_mexicana
ENSDARG00000057939	ythdf3	100	81.077	ENSPREG00000019781	ythdf3	100	78.896	Poecilia_reticulata
ENSDARG00000057939	ythdf3	100	61.614	ENSPPYG00000018626	YTHDF3	100	91.489	Pongo_abelii
ENSDARG00000057939	ythdf3	99	79.167	ENSPCAG00000016282	YTHDF3	98	77.963	Procavia_capensis
ENSDARG00000057939	ythdf3	100	76.268	ENSPCOG00000004856	YTHDF3	100	78.409	Propithecus_coquereli
ENSDARG00000057939	ythdf3	80	96.277	ENSPVAG00000002740	YTHDF3	80	96.591	Pteropus_vampyrus
ENSDARG00000057939	ythdf3	85	86.842	ENSPNYG00000002949	ythdf3	96	84.716	Pundamilia_nyererei
ENSDARG00000057939	ythdf3	100	76.105	ENSRNOG00000010084	Ythdf3	100	78.247	Rattus_norvegicus
ENSDARG00000057939	ythdf3	100	76.268	ENSRBIG00000036465	YTHDF3	100	78.409	Rhinopithecus_bieti
ENSDARG00000057939	ythdf3	100	76.105	ENSRROG00000035231	YTHDF3	100	78.247	Rhinopithecus_roxellana
ENSDARG00000057939	ythdf3	100	76.596	ENSSBOG00000035287	YTHDF3	100	78.734	Saimiri_boliviensis_boliviensis
ENSDARG00000057939	ythdf3	83	90.265	ENSSFOG00015015445	ythdf3	95	87.611	Scleropages_formosus
ENSDARG00000057939	ythdf3	99	80.268	ENSSMAG00000014999	ythdf3	100	79.466	Scophthalmus_maximus
ENSDARG00000057939	ythdf3	85	86.404	ENSSDUG00000014403	ythdf3	100	82.680	Seriola_dumerili
ENSDARG00000057939	ythdf3	98	75.839	ENSSARG00000007626	YTHDF3	98	77.665	Sorex_araneus
ENSDARG00000057939	ythdf3	86	85.526	ENSSPAG00000001269	ythdf3	99	80.782	Stegastes_partitus
ENSDARG00000057939	ythdf3	92	75.714	ENSSSCG00000033144	YTHDF3	100	77.876	Sus_scrofa
ENSDARG00000057939	ythdf3	100	79.608	ENSTRUG00000007870	ythdf3	100	80.229	Takifugu_rubripes
ENSDARG00000057939	ythdf3	100	80.231	ENSTNIG00000012698	ythdf3	100	79.504	Tetraodon_nigroviridis
ENSDARG00000057939	ythdf3	80	73.982	ENSTBEG00000005747	YTHDF3	70	72.374	Tupaia_belangeri
ENSDARG00000057939	ythdf3	100	76.432	ENSUAMG00000012624	YTHDF3	100	78.571	Ursus_americanus
ENSDARG00000057939	ythdf3	97	76.223	ENSUMAG00000014104	YTHDF3	96	78.428	Ursus_maritimus
ENSDARG00000057939	ythdf3	99	70.117	ENSVPAG00000008104	YTHDF3	98	71.186	Vicugna_pacos
ENSDARG00000057939	ythdf3	100	76.268	ENSVVUG00000018384	YTHDF3	100	78.409	Vulpes_vulpes
ENSDARG00000057939	ythdf3	100	79.538	ENSXETG00000021659	ythdf3	100	79.835	Xenopus_tropicalis
ENSDARG00000057939	ythdf3	100	78.383	ENSXCOG00000009687	ythdf3	99	77.537	Xiphophorus_couchianus
ENSDARG00000057939	ythdf3	100	80.556	ENSXMAG00000009698	ythdf3	100	78.862	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function