EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000058306 (Gene tree)
Gene ID: 431751
Gene Symbol: prpf18
Alias: zgc:91830
Full Name: PRP18 pre-mRNA processing factor 18 homolog (yeast)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6390 bases
Position: chr18:8402129-8408518
Accession: ZDB-GENE-040704-45
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000075597	PRP4	PF08799.11	2.9e-13	1	1
ENSDARP00000134309	PRP4	PF08799.11	3.1e-13	1	1
ENSDARP00000075597	Prp18	PF02840.15	3.8e-62	1	1
ENSDARP00000134309	Prp18	PF02840.15	4e-62	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000171974	-	1056	XM_021467629	ENSDARP00000134309	351 (aa)	XP_021323304	A0A0R4IGS3
ENSDART00000081154	-	1530	-	ENSDARP00000075597	342 (aa)	-	Z4YHX5

Gene Model

Click here to download ENSDARG00000058306's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000058306's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000058306	prpf18	100	85.088	ENSG00000165630	PRPF18	100	85.088	Homo_sapiens
ENSDARG00000058306	prpf18	100	90.936	ENSAPOG00000024177	prpf18	100	90.936	Acanthochromis_polyacanthus
ENSDARG00000058306	prpf18	100	84.503	ENSAMEG00000013591	-	100	84.503	Ailuropoda_melanoleuca
ENSDARG00000058306	prpf18	100	89.766	ENSACIG00000001186	prpf18	100	89.766	Amphilophus_citrinellus
ENSDARG00000058306	prpf18	98	91.045	ENSAOCG00000006572	prpf18	94	89.796	Amphiprion_ocellaris
ENSDARG00000058306	prpf18	100	91.228	ENSAPEG00000004564	prpf18	100	91.228	Amphiprion_percula
ENSDARG00000058306	prpf18	100	89.766	ENSATEG00000000303	prpf18	100	89.766	Anabas_testudineus
ENSDARG00000058306	prpf18	99	83.529	ENSAPLG00000003387	-	99	83.529	Anas_platyrhynchos
ENSDARG00000058306	prpf18	100	85.465	ENSACAG00000000818	-	100	85.465	Anolis_carolinensis
ENSDARG00000058306	prpf18	100	85.088	ENSANAG00000037445	-	100	85.088	Aotus_nancymaae
ENSDARG00000058306	prpf18	100	90.058	ENSACLG00000026296	prpf18	100	90.058	Astatotilapia_calliptera
ENSDARG00000058306	prpf18	100	92.308	ENSAMXG00000012848	prpf18	100	92.308	Astyanax_mexicanus
ENSDARG00000058306	prpf18	100	84.211	ENSBTAG00000017244	PRPF18	100	84.211	Bos_taurus
ENSDARG00000058306	prpf18	98	40.346	WBGene00009320	F32B6.3	97	40.346	Caenorhabditis_elegans
ENSDARG00000058306	prpf18	100	85.088	ENSCJAG00000009432	-	100	85.088	Callithrix_jacchus
ENSDARG00000058306	prpf18	100	84.503	ENSCAFG00000004735	-	100	84.503	Canis_familiaris
ENSDARG00000058306	prpf18	100	84.503	ENSCAFG00020007712	-	100	84.503	Canis_lupus_dingo
ENSDARG00000058306	prpf18	100	84.211	ENSCHIG00000000499	-	100	84.211	Capra_hircus
ENSDARG00000058306	prpf18	100	85.088	ENSTSYG00000003517	-	100	85.088	Carlito_syrichta
ENSDARG00000058306	prpf18	100	85.088	ENSCPOG00000021069	-	100	85.088	Cavia_porcellus
ENSDARG00000058306	prpf18	100	85.088	ENSCCAG00000036822	-	100	85.088	Cebus_capucinus
ENSDARG00000058306	prpf18	100	74.561	ENSCATG00000016633	-	100	74.561	Cercocebus_atys
ENSDARG00000058306	prpf18	100	85.088	ENSCLAG00000011770	-	100	85.088	Chinchilla_lanigera
ENSDARG00000058306	prpf18	100	84.046	ENSCSAG00000013109	-	100	84.046	Chlorocebus_sabaeus
ENSDARG00000058306	prpf18	100	81.461	ENSCPBG00000003100	-	100	82.022	Chrysemys_picta_bellii
ENSDARG00000058306	prpf18	99	56.395	ENSCING00000020481	-	97	56.395	Ciona_intestinalis
ENSDARG00000058306	prpf18	99	55.263	ENSCSAVG00000010546	-	99	54.810	Ciona_savignyi
ENSDARG00000058306	prpf18	100	85.088	ENSCANG00000034900	-	100	85.088	Colobus_angolensis_palliatus
ENSDARG00000058306	prpf18	100	84.795	ENSCGRG00001023665	Prpf18	100	84.795	Cricetulus_griseus_chok1gshd
ENSDARG00000058306	prpf18	100	84.795	ENSCGRG00000014690	Prpf18	100	84.795	Cricetulus_griseus_crigri
ENSDARG00000058306	prpf18	100	87.427	ENSCSEG00000005536	prpf18	99	87.427	Cynoglossus_semilaevis
ENSDARG00000058306	prpf18	100	88.889	ENSCVAG00000012401	prpf18	100	88.889	Cyprinodon_variegatus
ENSDARG00000058306	prpf18	100	84.503	ENSDNOG00000035607	-	100	84.503	Dasypus_novemcinctus
ENSDARG00000058306	prpf18	100	85.380	ENSDORG00000000858	Prpf18	100	85.380	Dipodomys_ordii
ENSDARG00000058306	prpf18	99	52.212	FBgn0027784	Prp18	98	51.917	Drosophila_melanogaster
ENSDARG00000058306	prpf18	100	75.731	ENSETEG00000015060	-	100	75.731	Echinops_telfairi
ENSDARG00000058306	prpf18	100	68.876	ENSEBUG00000016502	prpf18	99	67.919	Eptatretus_burgeri
ENSDARG00000058306	prpf18	100	84.795	ENSEASG00005019373	-	100	84.795	Equus_asinus_asinus
ENSDARG00000058306	prpf18	100	84.795	ENSECAG00000006997	PRPF18	100	84.795	Equus_caballus
ENSDARG00000058306	prpf18	92	51.582	ENSEEUG00000001171	-	79	100.000	Erinaceus_europaeus
ENSDARG00000058306	prpf18	100	88.047	ENSELUG00000022190	prpf18	100	88.047	Esox_lucius
ENSDARG00000058306	prpf18	100	84.503	ENSFCAG00000004436	-	100	84.503	Felis_catus
ENSDARG00000058306	prpf18	93	82.154	ENSFALG00000001912	-	97	82.209	Ficedula_albicollis
ENSDARG00000058306	prpf18	94	86.875	ENSFDAG00000014026	-	100	86.875	Fukomys_damarensis
ENSDARG00000058306	prpf18	99	57.429	ENSFDAG00000010713	-	97	57.429	Fukomys_damarensis
ENSDARG00000058306	prpf18	80	91.575	ENSFHEG00000020125	prpf18	98	91.386	Fundulus_heteroclitus
ENSDARG00000058306	prpf18	99	85.337	ENSGMOG00000012210	prpf18	99	85.337	Gadus_morhua
ENSDARG00000058306	prpf18	100	84.503	ENSGALG00000043593	-	100	84.503	Gallus_gallus
ENSDARG00000058306	prpf18	100	89.474	ENSGAFG00000006034	prpf18	100	89.474	Gambusia_affinis
ENSDARG00000058306	prpf18	100	86.257	ENSGACG00000012232	prpf18	100	86.257	Gasterosteus_aculeatus
ENSDARG00000058306	prpf18	100	84.795	ENSGAGG00000016878	-	100	84.795	Gopherus_agassizii
ENSDARG00000058306	prpf18	92	83.861	ENSGGOG00000025188	-	96	83.861	Gorilla_gorilla
ENSDARG00000058306	prpf18	100	90.058	ENSHBUG00000010264	prpf18	100	90.058	Haplochromis_burtoni
ENSDARG00000058306	prpf18	100	85.088	ENSHGLG00000018534	PRPF18	100	85.088	Heterocephalus_glaber_female
ENSDARG00000058306	prpf18	94	87.188	ENSHGLG00100012161	-	98	87.188	Heterocephalus_glaber_male
ENSDARG00000058306	prpf18	100	89.766	ENSHCOG00000015987	prpf18	100	89.766	Hippocampus_comes
ENSDARG00000058306	prpf18	100	86.402	ENSIPUG00000007432	prpf18	100	86.969	Ictalurus_punctatus
ENSDARG00000058306	prpf18	100	84.211	ENSSTOG00000008735	-	100	84.211	Ictidomys_tridecemlineatus
ENSDARG00000058306	prpf18	100	62.391	ENSJJAG00000015191	-	100	62.391	Jaculus_jaculus
ENSDARG00000058306	prpf18	100	85.088	ENSJJAG00000024041	-	100	85.088	Jaculus_jaculus
ENSDARG00000058306	prpf18	100	89.474	ENSKMAG00000012124	prpf18	100	89.474	Kryptolebias_marmoratus
ENSDARG00000058306	prpf18	98	85.460	ENSLBEG00000028466	prpf18	99	85.460	Labrus_bergylta
ENSDARG00000058306	prpf18	100	85.673	ENSLACG00000009885	prpf18	100	85.673	Latimeria_chalumnae
ENSDARG00000058306	prpf18	100	89.766	ENSLOCG00000016736	prpf18	100	89.766	Lepisosteus_oculatus
ENSDARG00000058306	prpf18	100	85.088	ENSLAFG00000007753	-	100	85.088	Loxodonta_africana
ENSDARG00000058306	prpf18	100	85.088	ENSMFAG00000000540	-	100	85.088	Macaca_fascicularis
ENSDARG00000058306	prpf18	100	85.088	ENSMMUG00000015071	PRPF18	93	94.040	Macaca_mulatta
ENSDARG00000058306	prpf18	100	85.088	ENSMNEG00000024679	-	100	85.088	Macaca_nemestrina
ENSDARG00000058306	prpf18	100	69.883	ENSMLEG00000031715	-	100	69.883	Mandrillus_leucophaeus
ENSDARG00000058306	prpf18	100	90.936	ENSMAMG00000006610	prpf18	100	90.936	Mastacembelus_armatus
ENSDARG00000058306	prpf18	100	90.058	ENSMZEG00005019392	prpf18	100	90.058	Maylandia_zebra
ENSDARG00000058306	prpf18	100	84.503	ENSMGAG00000005023	-	100	84.503	Meleagris_gallopavo
ENSDARG00000058306	prpf18	100	84.795	ENSMICG00000006572	-	100	84.795	Microcebus_murinus
ENSDARG00000058306	prpf18	100	85.088	ENSMOCG00000021468	Prpf18	100	85.088	Microtus_ochrogaster
ENSDARG00000058306	prpf18	100	88.012	ENSMMOG00000013012	prpf18	100	88.012	Mola_mola
ENSDARG00000058306	prpf18	100	76.023	ENSMODG00000024043	-	100	76.023	Monodelphis_domestica
ENSDARG00000058306	prpf18	96	80.178	ENSMODG00000016902	-	92	80.178	Monodelphis_domestica
ENSDARG00000058306	prpf18	100	83.237	ENSMALG00000005486	prpf18	100	83.815	Monopterus_albus
ENSDARG00000058306	prpf18	100	85.088	MGP_CAROLIEiJ_G0023143	Prpf18	97	94.366	Mus_caroli
ENSDARG00000058306	prpf18	100	85.380	ENSMUSG00000039449	Prpf18	97	94.366	Mus_musculus
ENSDARG00000058306	prpf18	100	85.380	MGP_PahariEiJ_G0019203	Prpf18	97	94.366	Mus_pahari
ENSDARG00000058306	prpf18	100	85.088	MGP_SPRETEiJ_G0024061	Prpf18	97	94.366	Mus_spretus
ENSDARG00000058306	prpf18	100	84.211	ENSMPUG00000000938	-	100	84.211	Mustela_putorius_furo
ENSDARG00000058306	prpf18	100	84.795	ENSMLUG00000009200	-	100	84.795	Myotis_lucifugus
ENSDARG00000058306	prpf18	100	85.088	ENSNGAG00000012500	-	100	85.088	Nannospalax_galili
ENSDARG00000058306	prpf18	67	83.043	ENSNGAG00000023550	-	82	83.043	Nannospalax_galili
ENSDARG00000058306	prpf18	100	90.351	ENSNBRG00000001778	prpf18	100	90.351	Neolamprologus_brichardi
ENSDARG00000058306	prpf18	100	85.088	ENSNLEG00000012186	-	100	85.088	Nomascus_leucogenys
ENSDARG00000058306	prpf18	100	59.649	ENSMEUG00000005032	-	100	59.649	Notamacropus_eugenii
ENSDARG00000058306	prpf18	77	65.283	ENSOPRG00000002153	-	100	65.283	Ochotona_princeps
ENSDARG00000058306	prpf18	100	84.795	ENSODEG00000003770	-	100	84.795	Octodon_degus
ENSDARG00000058306	prpf18	98	89.552	ENSONIG00000014854	prpf18	96	89.552	Oreochromis_niloticus
ENSDARG00000058306	prpf18	100	84.795	ENSOANG00000015404	-	100	84.795	Ornithorhynchus_anatinus
ENSDARG00000058306	prpf18	100	84.795	ENSOCUG00000027756	-	96	85.627	Oryctolagus_cuniculus
ENSDARG00000058306	prpf18	100	88.034	ENSORLG00000010293	prpf18	100	88.034	Oryzias_latipes
ENSDARG00000058306	prpf18	100	89.181	ENSORLG00020001530	prpf18	100	89.181	Oryzias_latipes_hni
ENSDARG00000058306	prpf18	100	88.889	ENSORLG00015013705	prpf18	100	88.889	Oryzias_latipes_hsok
ENSDARG00000058306	prpf18	100	90.058	ENSOMEG00000009167	prpf18	100	90.058	Oryzias_melastigma
ENSDARG00000058306	prpf18	100	84.211	ENSOGAG00000007294	-	100	84.211	Otolemur_garnettii
ENSDARG00000058306	prpf18	100	83.191	ENSOARG00000006243	-	100	83.191	Ovis_aries
ENSDARG00000058306	prpf18	100	85.088	ENSPPAG00000041959	-	100	85.088	Pan_paniscus
ENSDARG00000058306	prpf18	100	84.503	ENSPPRG00000000107	-	100	84.503	Panthera_pardus
ENSDARG00000058306	prpf18	100	84.503	ENSPTIG00000021094	-	100	84.503	Panthera_tigris_altaica
ENSDARG00000058306	prpf18	100	85.088	ENSPTRG00000002306	PRPF18	100	85.088	Pan_troglodytes
ENSDARG00000058306	prpf18	100	85.380	ENSPANG00000023346	-	100	85.380	Papio_anubis
ENSDARG00000058306	prpf18	100	87.464	ENSPKIG00000014128	prpf18	96	87.464	Paramormyrops_kingsleyae
ENSDARG00000058306	prpf18	100	85.380	ENSPSIG00000016064	-	100	85.380	Pelodiscus_sinensis
ENSDARG00000058306	prpf18	100	84.503	ENSPMGG00000016486	prpf18	100	84.503	Periophthalmus_magnuspinnatus
ENSDARG00000058306	prpf18	100	84.795	ENSPEMG00000013704	Prpf18	100	84.795	Peromyscus_maniculatus_bairdii
ENSDARG00000058306	prpf18	100	74.640	ENSPMAG00000000204	prpf18	100	74.640	Petromyzon_marinus
ENSDARG00000058306	prpf18	92	83.544	ENSPCIG00000012963	-	99	83.544	Phascolarctos_cinereus
ENSDARG00000058306	prpf18	100	86.610	ENSPFOG00000017611	prpf18	100	86.610	Poecilia_formosa
ENSDARG00000058306	prpf18	100	87.719	ENSPLAG00000000369	prpf18	100	87.719	Poecilia_latipinna
ENSDARG00000058306	prpf18	100	88.012	ENSPMEG00000005183	prpf18	100	88.012	Poecilia_mexicana
ENSDARG00000058306	prpf18	100	88.012	ENSPREG00000015232	prpf18	100	88.012	Poecilia_reticulata
ENSDARG00000058306	prpf18	100	84.795	ENSPPYG00000002101	PRPF18	100	84.795	Pongo_abelii
ENSDARG00000058306	prpf18	100	66.959	ENSPCAG00000010833	-	100	66.959	Procavia_capensis
ENSDARG00000058306	prpf18	100	80.409	ENSPCOG00000013057	-	100	80.409	Propithecus_coquereli
ENSDARG00000058306	prpf18	100	52.047	ENSPVAG00000002947	-	100	52.047	Pteropus_vampyrus
ENSDARG00000058306	prpf18	100	90.351	ENSPNYG00000003554	prpf18	100	90.351	Pundamilia_nyererei
ENSDARG00000058306	prpf18	100	93.732	ENSPNAG00000023151	prpf18	100	93.732	Pygocentrus_nattereri
ENSDARG00000058306	prpf18	100	84.795	ENSRNOG00000018396	Prpf18	100	84.795	Rattus_norvegicus
ENSDARG00000058306	prpf18	100	84.795	ENSRBIG00000028028	-	100	84.795	Rhinopithecus_bieti
ENSDARG00000058306	prpf18	100	85.088	ENSRROG00000040695	-	100	85.088	Rhinopithecus_roxellana
ENSDARG00000058306	prpf18	100	85.088	ENSSBOG00000034482	-	100	85.088	Saimiri_boliviensis_boliviensis
ENSDARG00000058306	prpf18	100	84.503	ENSSHAG00000016463	-	100	84.503	Sarcophilus_harrisii
ENSDARG00000058306	prpf18	100	71.637	ENSSHAG00000009669	-	100	71.637	Sarcophilus_harrisii
ENSDARG00000058306	prpf18	98	86.705	ENSSFOG00015022118	prpf18	100	80.172	Scleropages_formosus
ENSDARG00000058306	prpf18	68	50.215	ENSSFOG00015021154	-	89	50.215	Scleropages_formosus
ENSDARG00000058306	prpf18	100	86.842	ENSSMAG00000005308	prpf18	100	86.842	Scophthalmus_maximus
ENSDARG00000058306	prpf18	100	91.228	ENSSDUG00000015428	prpf18	100	91.228	Seriola_dumerili
ENSDARG00000058306	prpf18	100	91.228	ENSSLDG00000023989	prpf18	100	91.228	Seriola_lalandi_dorsalis
ENSDARG00000058306	prpf18	100	56.725	ENSSARG00000005307	-	100	56.725	Sorex_araneus
ENSDARG00000058306	prpf18	100	85.088	ENSSPUG00000002619	-	100	85.088	Sphenodon_punctatus
ENSDARG00000058306	prpf18	100	90.058	ENSSPAG00000019502	prpf18	100	90.058	Stegastes_partitus
ENSDARG00000058306	prpf18	100	84.503	ENSSSCG00000026354	-	100	84.503	Sus_scrofa
ENSDARG00000058306	prpf18	100	84.503	ENSTGUG00000002286	-	100	84.503	Taeniopygia_guttata
ENSDARG00000058306	prpf18	100	85.965	ENSTRUG00000011278	prpf18	100	85.965	Takifugu_rubripes
ENSDARG00000058306	prpf18	100	87.719	ENSTNIG00000000911	prpf18	100	87.719	Tetraodon_nigroviridis
ENSDARG00000058306	prpf18	80	100.000	ENSTBEG00000013011	-	79	100.000	Tupaia_belangeri
ENSDARG00000058306	prpf18	100	85.088	ENSTTRG00000011117	PRPF18	100	85.088	Tursiops_truncatus
ENSDARG00000058306	prpf18	91	87.138	ENSUAMG00000001815	-	93	87.138	Ursus_americanus
ENSDARG00000058306	prpf18	100	79.532	ENSUMAG00000012329	-	100	79.532	Ursus_maritimus
ENSDARG00000058306	prpf18	100	78.947	ENSVPAG00000011486	-	100	78.947	Vicugna_pacos
ENSDARG00000058306	prpf18	100	84.503	ENSVVUG00000005453	-	100	84.503	Vulpes_vulpes
ENSDARG00000058306	prpf18	100	78.551	ENSXETG00000024057	prpf18	100	78.551	Xenopus_tropicalis
ENSDARG00000058306	prpf18	100	87.791	ENSXCOG00000020414	prpf18	100	87.791	Xiphophorus_couchianus
ENSDARG00000058306	prpf18	100	88.304	ENSXMAG00000004713	prpf18	91	88.304	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000350	generation of catalytic spliceosome for second transesterification step	21873635.	IBA	Process
GO:0000386	second spliceosomal transesterification activity	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071021	U2-type post-spliceosomal complex	21873635.	IBA	Component
GO:0071048	nuclear retention of unspliced pre-mRNA at the site of transcription	21873635.	IBA	Process