EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000058328 (Gene tree)
Gene ID: 573047
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 3537 bases
Position: chr22:10752511-10756047
Accession: ZDB-GENE-030131-8284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000075631	LSM	PF01423.22	2.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000081188	-	884	-	ENSDARP00000075631	103 (aa)	-	A4FVI7
ENSDART00000186542	-	848	-	ENSDARP00000153200	49 (aa)	-	Q7SXE2

Gene Model

Click here to download ENSDARG00000058328's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000058328's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000058328	lsm7	69	40.845	ENSDARG00000099667	snrpg	83	40.845

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000058328	lsm7	100	95.146	ENSG00000130332	LSM7	100	97.959	Homo_sapiens
ENSDARG00000058328	lsm7	91	96.809	ENSAPOG00000015573	lsm7	81	96.809	Acanthochromis_polyacanthus
ENSDARG00000058328	lsm7	100	92.233	ENSAMEG00000005484	LSM7	100	92.233	Ailuropoda_melanoleuca
ENSDARG00000058328	lsm7	95	97.959	ENSACIG00000006498	lsm7	78	97.959	Amphilophus_citrinellus
ENSDARG00000058328	lsm7	99	96.078	ENSAOCG00000001077	lsm7	92	97.030	Amphiprion_ocellaris
ENSDARG00000058328	lsm7	100	95.146	ENSAPEG00000024447	lsm7	92	97.030	Amphiprion_percula
ENSDARG00000058328	lsm7	100	97.087	ENSAPEG00000000694	lsm7	100	97.087	Amphiprion_percula
ENSDARG00000058328	lsm7	100	97.087	ENSATEG00000008557	lsm7	100	97.087	Anabas_testudineus
ENSDARG00000058328	lsm7	100	86.408	ENSANAG00000022222	-	100	86.408	Aotus_nancymaae
ENSDARG00000058328	lsm7	100	95.146	ENSANAG00000037196	-	100	95.146	Aotus_nancymaae
ENSDARG00000058328	lsm7	100	98.058	ENSACLG00000021021	lsm7	100	98.058	Astatotilapia_calliptera
ENSDARG00000058328	lsm7	100	97.087	ENSAMXG00000037622	lsm7	100	97.087	Astyanax_mexicanus
ENSDARG00000058328	lsm7	100	95.146	ENSBTAG00000004521	LSM7	100	95.146	Bos_taurus
ENSDARG00000058328	lsm7	97	58.000	WBGene00003081	lsm-7	96	58.000	Caenorhabditis_elegans
ENSDARG00000058328	lsm7	54	92.857	ENSCJAG00000039713	-	68	92.857	Callithrix_jacchus
ENSDARG00000058328	lsm7	98	94.059	ENSCAFG00000019409	LSM7	98	94.059	Canis_familiaris
ENSDARG00000058328	lsm7	98	94.059	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSDARG00000058328	lsm7	100	93.204	ENSCHIG00000023663	LSM7	100	93.204	Capra_hircus
ENSDARG00000058328	lsm7	69	97.183	ENSCAPG00000014534	LSM7	100	97.183	Cavia_aperea
ENSDARG00000058328	lsm7	100	95.146	ENSCPOG00000014025	LSM7	100	95.146	Cavia_porcellus
ENSDARG00000058328	lsm7	98	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSDARG00000058328	lsm7	100	95.146	ENSCATG00000023543	LSM7	100	95.146	Cercocebus_atys
ENSDARG00000058328	lsm7	100	95.146	ENSCLAG00000011635	LSM7	100	95.146	Chinchilla_lanigera
ENSDARG00000058328	lsm7	100	95.146	ENSCSAG00000011599	LSM7	100	95.146	Chlorocebus_sabaeus
ENSDARG00000058328	lsm7	70	97.222	ENSCPBG00000021317	LSM7	77	97.222	Chrysemys_picta_bellii
ENSDARG00000058328	lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSDARG00000058328	lsm7	100	95.146	ENSCANG00000035525	LSM7	100	95.146	Colobus_angolensis_palliatus
ENSDARG00000058328	lsm7	100	94.175	ENSCGRG00001000807	-	100	94.175	Cricetulus_griseus_chok1gshd
ENSDARG00000058328	lsm7	87	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSDARG00000058328	lsm7	87	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSDARG00000058328	lsm7	98	94.059	ENSCGRG00000014355	-	97	94.059	Cricetulus_griseus_crigri
ENSDARG00000058328	lsm7	98	97.030	ENSCSEG00000014900	lsm7	86	97.030	Cynoglossus_semilaevis
ENSDARG00000058328	lsm7	98	97.030	ENSCVAG00000021091	lsm7	94	97.030	Cyprinodon_variegatus
ENSDARG00000058328	lsm7	99	93.137	ENSDORG00000024460	Lsm7	100	93.137	Dipodomys_ordii
ENSDARG00000058328	lsm7	94	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSDARG00000058328	lsm7	98	92.079	ENSETEG00000012788	LSM7	99	92.079	Echinops_telfairi
ENSDARG00000058328	lsm7	100	85.437	ENSEBUG00000016992	lsm7	99	85.437	Eptatretus_burgeri
ENSDARG00000058328	lsm7	81	60.241	ENSEBUG00000010470	-	79	60.241	Eptatretus_burgeri
ENSDARG00000058328	lsm7	100	91.262	ENSECAG00000001440	LSM7	66	91.262	Equus_caballus
ENSDARG00000058328	lsm7	100	94.175	ENSFCAG00000003445	LSM7	100	94.175	Felis_catus
ENSDARG00000058328	lsm7	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSDARG00000058328	lsm7	93	95.833	ENSFDAG00000007661	LSM7	100	95.833	Fukomys_damarensis
ENSDARG00000058328	lsm7	98	97.030	ENSFHEG00000006349	lsm7	90	97.030	Fundulus_heteroclitus
ENSDARG00000058328	lsm7	100	93.204	ENSGMOG00000013320	lsm7	100	93.204	Gadus_morhua
ENSDARG00000058328	lsm7	100	97.087	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSDARG00000058328	lsm7	100	94.175	ENSGACG00000010390	lsm7	100	94.175	Gasterosteus_aculeatus
ENSDARG00000058328	lsm7	100	95.146	ENSGGOG00000010172	LSM7	100	95.146	Gorilla_gorilla
ENSDARG00000058328	lsm7	100	98.058	ENSHBUG00000004616	lsm7	100	98.058	Haplochromis_burtoni
ENSDARG00000058328	lsm7	100	95.146	ENSHGLG00000010587	LSM7	100	95.146	Heterocephalus_glaber_female
ENSDARG00000058328	lsm7	100	95.146	ENSHGLG00100000852	LSM7	100	95.146	Heterocephalus_glaber_male
ENSDARG00000058328	lsm7	98	98.020	ENSHCOG00000020252	lsm7	100	98.020	Hippocampus_comes
ENSDARG00000058328	lsm7	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSDARG00000058328	lsm7	98	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSDARG00000058328	lsm7	97	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSDARG00000058328	lsm7	100	97.087	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSDARG00000058328	lsm7	100	96.117	ENSLBEG00000005203	lsm7	100	96.117	Labrus_bergylta
ENSDARG00000058328	lsm7	90	96.774	ENSLACG00000015700	LSM7	100	94.175	Latimeria_chalumnae
ENSDARG00000058328	lsm7	98	97.030	ENSLOCG00000004356	lsm7	98	97.030	Lepisosteus_oculatus
ENSDARG00000058328	lsm7	98	95.050	ENSLAFG00000029302	LSM7	98	95.050	Loxodonta_africana
ENSDARG00000058328	lsm7	100	95.146	ENSMFAG00000044572	LSM7	100	95.146	Macaca_fascicularis
ENSDARG00000058328	lsm7	100	95.146	ENSMMUG00000000452	LSM7	100	95.146	Macaca_mulatta
ENSDARG00000058328	lsm7	100	95.146	ENSMNEG00000004393	LSM7	100	95.146	Macaca_nemestrina
ENSDARG00000058328	lsm7	100	95.146	ENSMLEG00000030852	LSM7	100	95.146	Mandrillus_leucophaeus
ENSDARG00000058328	lsm7	100	98.058	ENSMAMG00000005410	lsm7	100	98.058	Mastacembelus_armatus
ENSDARG00000058328	lsm7	100	98.058	ENSMZEG00005028055	lsm7	100	98.058	Maylandia_zebra
ENSDARG00000058328	lsm7	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSDARG00000058328	lsm7	100	94.175	ENSMAUG00000009276	Lsm7	100	94.175	Mesocricetus_auratus
ENSDARG00000058328	lsm7	100	94.175	ENSMICG00000009988	-	100	94.175	Microcebus_murinus
ENSDARG00000058328	lsm7	100	95.146	ENSMICG00000028619	-	100	95.146	Microcebus_murinus
ENSDARG00000058328	lsm7	100	94.175	ENSMOCG00000016925	Lsm7	100	94.175	Microtus_ochrogaster
ENSDARG00000058328	lsm7	100	97.087	ENSMMOG00000019645	lsm7	98	97.087	Mola_mola
ENSDARG00000058328	lsm7	100	96.117	ENSMODG00000004722	LSM7	100	96.117	Monodelphis_domestica
ENSDARG00000058328	lsm7	100	98.058	ENSMALG00000014511	lsm7	79	98.058	Monopterus_albus
ENSDARG00000058328	lsm7	99	94.118	MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	Mus_caroli
ENSDARG00000058328	lsm7	99	94.118	ENSMUSG00000035215	Lsm7	99	94.118	Mus_musculus
ENSDARG00000058328	lsm7	99	94.118	MGP_PahariEiJ_G0031020	Lsm7	99	94.118	Mus_pahari
ENSDARG00000058328	lsm7	99	94.118	MGP_SPRETEiJ_G0016425	Lsm7	99	94.118	Mus_spretus
ENSDARG00000058328	lsm7	100	92.233	ENSMLUG00000013097	-	100	92.233	Myotis_lucifugus
ENSDARG00000058328	lsm7	99	89.216	ENSMLUG00000024002	-	94	89.216	Myotis_lucifugus
ENSDARG00000058328	lsm7	100	93.204	ENSNGAG00000021637	Lsm7	100	93.204	Nannospalax_galili
ENSDARG00000058328	lsm7	100	96.117	ENSNBRG00000001237	-	82	96.117	Neolamprologus_brichardi
ENSDARG00000058328	lsm7	98	98.020	ENSNBRG00000015770	lsm7	87	98.020	Neolamprologus_brichardi
ENSDARG00000058328	lsm7	100	95.146	ENSNLEG00000002265	LSM7	100	95.146	Nomascus_leucogenys
ENSDARG00000058328	lsm7	100	95.146	ENSODEG00000013590	-	100	95.146	Octodon_degus
ENSDARG00000058328	lsm7	100	88.350	ENSODEG00000018769	-	100	88.350	Octodon_degus
ENSDARG00000058328	lsm7	100	75.728	ENSODEG00000008190	-	100	75.728	Octodon_degus
ENSDARG00000058328	lsm7	100	98.058	ENSONIG00000001801	lsm7	89	98.058	Oreochromis_niloticus
ENSDARG00000058328	lsm7	100	97.087	ENSORLG00000023951	lsm7	100	97.087	Oryzias_latipes
ENSDARG00000058328	lsm7	100	97.087	ENSORLG00020022226	lsm7	100	97.087	Oryzias_latipes_hni
ENSDARG00000058328	lsm7	100	95.146	ENSORLG00015020044	lsm7	94	97.030	Oryzias_latipes_hsok
ENSDARG00000058328	lsm7	100	97.087	ENSOMEG00000012806	lsm7	100	97.087	Oryzias_melastigma
ENSDARG00000058328	lsm7	98	93.069	ENSOGAG00000000144	-	99	93.069	Otolemur_garnettii
ENSDARG00000058328	lsm7	100	83.495	ENSOGAG00000024373	-	100	83.495	Otolemur_garnettii
ENSDARG00000058328	lsm7	100	93.204	ENSOARG00000014013	LSM7	100	93.204	Ovis_aries
ENSDARG00000058328	lsm7	100	95.146	ENSPPAG00000026500	LSM7	100	95.146	Pan_paniscus
ENSDARG00000058328	lsm7	100	94.175	ENSPPRG00000008624	LSM7	100	94.175	Panthera_pardus
ENSDARG00000058328	lsm7	90	94.624	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSDARG00000058328	lsm7	100	95.146	ENSPTRG00000010233	LSM7	100	95.146	Pan_troglodytes
ENSDARG00000058328	lsm7	100	95.146	ENSPANG00000020668	LSM7	100	95.146	Papio_anubis
ENSDARG00000058328	lsm7	100	98.058	ENSPKIG00000011325	lsm7	100	98.058	Paramormyrops_kingsleyae
ENSDARG00000058328	lsm7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSDARG00000058328	lsm7	100	97.087	ENSPMGG00000006498	lsm7	100	97.087	Periophthalmus_magnuspinnatus
ENSDARG00000058328	lsm7	100	96.117	ENSPCIG00000030454	LSM7	100	96.117	Phascolarctos_cinereus
ENSDARG00000058328	lsm7	100	94.175	ENSPFOG00000012467	lsm7	91	94.175	Poecilia_formosa
ENSDARG00000058328	lsm7	100	94.175	ENSPLAG00000000252	lsm7	94	95.098	Poecilia_latipinna
ENSDARG00000058328	lsm7	100	94.175	ENSPMEG00000000587	lsm7	94	95.098	Poecilia_mexicana
ENSDARG00000058328	lsm7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSDARG00000058328	lsm7	71	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSDARG00000058328	lsm7	100	95.146	ENSPCOG00000017177	LSM7	100	95.146	Propithecus_coquereli
ENSDARG00000058328	lsm7	100	98.058	ENSPNYG00000006938	lsm7	100	98.058	Pundamilia_nyererei
ENSDARG00000058328	lsm7	100	97.087	ENSPNAG00000010141	lsm7	100	97.087	Pygocentrus_nattereri
ENSDARG00000058328	lsm7	99	95.098	ENSRNOG00000019552	Lsm7	99	95.098	Rattus_norvegicus
ENSDARG00000058328	lsm7	100	95.146	ENSRBIG00000035978	LSM7	100	95.146	Rhinopithecus_bieti
ENSDARG00000058328	lsm7	100	95.146	ENSRROG00000034044	LSM7	100	95.146	Rhinopithecus_roxellana
ENSDARG00000058328	lsm7	83	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSDARG00000058328	lsm7	100	95.146	ENSSBOG00000034899	LSM7	100	95.146	Saimiri_boliviensis_boliviensis
ENSDARG00000058328	lsm7	100	96.117	ENSSFOG00015006728	lsm7	100	96.117	Scleropages_formosus
ENSDARG00000058328	lsm7	100	95.146	ENSSMAG00000004195	lsm7	93	97.030	Scophthalmus_maximus
ENSDARG00000058328	lsm7	100	97.087	ENSSDUG00000001863	lsm7	100	97.087	Seriola_dumerili
ENSDARG00000058328	lsm7	100	97.087	ENSSLDG00000016339	lsm7	100	97.087	Seriola_lalandi_dorsalis
ENSDARG00000058328	lsm7	100	97.087	ENSSPAG00000015221	lsm7	100	97.087	Stegastes_partitus
ENSDARG00000058328	lsm7	98	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSDARG00000058328	lsm7	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSDARG00000058328	lsm7	100	98.058	ENSTRUG00000022913	lsm7	100	98.058	Takifugu_rubripes
ENSDARG00000058328	lsm7	100	98.058	ENSTNIG00000015525	lsm7	100	98.058	Tetraodon_nigroviridis
ENSDARG00000058328	lsm7	68	84.286	ENSTBEG00000016602	LSM7	100	84.286	Tupaia_belangeri
ENSDARG00000058328	lsm7	100	92.233	ENSUAMG00000000912	LSM7	86	92.233	Ursus_americanus
ENSDARG00000058328	lsm7	90	94.624	ENSUMAG00000006556	LSM7	78	95.000	Ursus_maritimus
ENSDARG00000058328	lsm7	69	95.775	ENSVVUG00000002640	LSM7	65	95.775	Vulpes_vulpes
ENSDARG00000058328	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSDARG00000058328	lsm7	99	96.078	ENSXCOG00000002572	lsm7	100	96.078	Xiphophorus_couchianus
ENSDARG00000058328	lsm7	100	97.087	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component