EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000058818 (Gene tree)
Gene ID: 333991
Gene Symbol: rbm38
Alias: fi25e12|rnpc1|wu:fi25e12|zgc:92336
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 45640 bases
Position: chr23:6586467-6632106
Accession: ZDB-GENE-030131-5923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000111830	RRM_1	PF00076.22	6.8e-17	1	1
ENSDARP00000076202	RRM_1	PF00076.22	7.7e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000121480	-	877	-	ENSDARP00000111830	210 (aa)	-	E9QB16
ENSDART00000081763	-	2393	-	ENSDARP00000076202	234 (aa)	-	B7ZVC7

Gene Model

Click here to download ENSDARG00000058818's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000058818's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000058818	rbm38	52	78.571	ENSDARG00000031809	rbm24b	89	78.571
ENSDARG00000058818	rbm38	63	72.368	ENSDARG00000102995	rbm24a	98	80.702

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000058818	rbm38	92	63.677	ENSG00000132819	RBM38	91	89.286	Homo_sapiens
ENSDARG00000058818	rbm38	100	65.587	ENSAPOG00000003301	rbm38	98	65.587	Acanthochromis_polyacanthus
ENSDARG00000058818	rbm38	82	82.564	ENSAPOG00000009939	-	89	82.564	Acanthochromis_polyacanthus
ENSDARG00000058818	rbm38	100	70.782	ENSACIG00000012502	-	100	87.179	Amphilophus_citrinellus
ENSDARG00000058818	rbm38	100	63.052	ENSACIG00000000010	rbm38	98	63.052	Amphilophus_citrinellus
ENSDARG00000058818	rbm38	100	65.587	ENSAOCG00000013497	-	98	65.587	Amphiprion_ocellaris
ENSDARG00000058818	rbm38	82	81.026	ENSAOCG00000012559	RBM38	99	73.729	Amphiprion_ocellaris
ENSDARG00000058818	rbm38	100	65.587	ENSAPEG00000013137	rbm38	98	65.587	Amphiprion_percula
ENSDARG00000058818	rbm38	82	81.026	ENSAPEG00000023581	-	99	72.428	Amphiprion_percula
ENSDARG00000058818	rbm38	98	62.661	ENSATEG00000016366	rbm38	97	62.661	Anabas_testudineus
ENSDARG00000058818	rbm38	82	81.538	ENSATEG00000016710	-	99	72.245	Anabas_testudineus
ENSDARG00000058818	rbm38	94	63.717	ENSACAG00000016238	RBM38	90	63.717	Anolis_carolinensis
ENSDARG00000058818	rbm38	92	64.574	ENSANAG00000031959	RBM38	78	92.553	Aotus_nancymaae
ENSDARG00000058818	rbm38	100	71.255	ENSACLG00000019514	-	99	71.255	Astatotilapia_calliptera
ENSDARG00000058818	rbm38	100	71.610	ENSAMXG00000015601	-	99	71.610	Astyanax_mexicanus
ENSDARG00000058818	rbm38	99	67.373	ENSAMXG00000038120	rbm38	99	67.373	Astyanax_mexicanus
ENSDARG00000058818	rbm38	92	64.126	ENSBTAG00000008105	RBM38	88	64.126	Bos_taurus
ENSDARG00000058818	rbm38	92	63.677	ENSCJAG00000019139	RBM38	78	92.553	Callithrix_jacchus
ENSDARG00000058818	rbm38	92	65.919	ENSCAFG00020021943	RBM38	88	65.919	Canis_lupus_dingo
ENSDARG00000058818	rbm38	92	63.839	ENSCHIG00000002609	RBM38	88	63.839	Capra_hircus
ENSDARG00000058818	rbm38	92	64.126	ENSCPOG00000012781	RBM38	88	64.126	Cavia_porcellus
ENSDARG00000058818	rbm38	92	63.677	ENSCCAG00000036872	RBM38	78	92.553	Cebus_capucinus
ENSDARG00000058818	rbm38	92	64.126	ENSCATG00000032133	RBM38	78	92.553	Cercocebus_atys
ENSDARG00000058818	rbm38	92	64.126	ENSCLAG00000005906	RBM38	92	64.126	Chinchilla_lanigera
ENSDARG00000058818	rbm38	92	64.126	ENSCSAG00000015503	RBM38	88	64.126	Chlorocebus_sabaeus
ENSDARG00000058818	rbm38	93	65.471	ENSCPBG00000024059	RBM38	99	65.471	Chrysemys_picta_bellii
ENSDARG00000058818	rbm38	66	61.728	ENSCING00000025102	-	71	61.212	Ciona_intestinalis
ENSDARG00000058818	rbm38	64	63.462	ENSCSAVG00000001132	-	62	61.818	Ciona_savignyi
ENSDARG00000058818	rbm38	92	48.636	ENSCANG00000030105	-	77	48.636	Colobus_angolensis_palliatus
ENSDARG00000058818	rbm38	74	72.222	ENSCGRG00001012928	Rbm38	89	63.677	Cricetulus_griseus_chok1gshd
ENSDARG00000058818	rbm38	94	70.982	ENSCSEG00000004701	-	99	70.782	Cynoglossus_semilaevis
ENSDARG00000058818	rbm38	81	64.615	ENSCSEG00000020943	rbm38	65	64.615	Cynoglossus_semilaevis
ENSDARG00000058818	rbm38	82	82.051	ENSCVAG00000005472	-	86	78.571	Cyprinodon_variegatus
ENSDARG00000058818	rbm38	82	69.500	ENSCVAG00000015952	rbm38	97	62.753	Cyprinodon_variegatus
ENSDARG00000058818	rbm38	92	62.896	ENSDNOG00000032004	RBM38	98	62.896	Dasypus_novemcinctus
ENSDARG00000058818	rbm38	92	64.126	ENSECAG00000007700	RBM38	88	64.126	Equus_caballus
ENSDARG00000058818	rbm38	92	61.607	ENSEEUG00000013489	RBM38	89	62.946	Erinaceus_europaeus
ENSDARG00000058818	rbm38	100	72.727	ENSELUG00000005849	-	99	72.727	Esox_lucius
ENSDARG00000058818	rbm38	92	67.401	ENSELUG00000000585	-	99	67.401	Esox_lucius
ENSDARG00000058818	rbm38	92	64.574	ENSFCAG00000042916	RBM38	78	91.489	Felis_catus
ENSDARG00000058818	rbm38	75	73.743	ENSFALG00000010805	RBM38	91	73.743	Ficedula_albicollis
ENSDARG00000058818	rbm38	100	63.710	ENSFHEG00000017748	rbm38	98	63.710	Fundulus_heteroclitus
ENSDARG00000058818	rbm38	85	79.126	ENSFHEG00000006160	-	92	79.126	Fundulus_heteroclitus
ENSDARG00000058818	rbm38	77	75.806	ENSGMOG00000016655	-	100	77.419	Gadus_morhua
ENSDARG00000058818	rbm38	93	65.471	ENSGALG00000026081	RBM38	99	66.368	Gallus_gallus
ENSDARG00000058818	rbm38	76	74.444	ENSGACG00000015224	rbm38	87	74.444	Gasterosteus_aculeatus
ENSDARG00000058818	rbm38	94	68.584	ENSGACG00000009873	-	100	68.584	Gasterosteus_aculeatus
ENSDARG00000058818	rbm38	93	65.471	ENSGAGG00000001187	RBM38	99	65.471	Gopherus_agassizii
ENSDARG00000058818	rbm38	100	63.563	ENSHBUG00000012058	rbm38	98	63.563	Haplochromis_burtoni
ENSDARG00000058818	rbm38	100	71.967	ENSHBUG00000011778	-	99	71.967	Haplochromis_burtoni
ENSDARG00000058818	rbm38	92	61.883	ENSHGLG00000015077	RBM38	88	64.126	Heterocephalus_glaber_female
ENSDARG00000058818	rbm38	85	75.362	ENSHCOG00000005622	-	60	76.329	Hippocampus_comes
ENSDARG00000058818	rbm38	98	52.941	ENSHCOG00000019040	rbm38	97	52.941	Hippocampus_comes
ENSDARG00000058818	rbm38	100	67.797	ENSIPUG00000019349	-	99	67.797	Ictalurus_punctatus
ENSDARG00000058818	rbm38	79	62.626	ENSKMAG00000012402	rbm38	85	62.626	Kryptolebias_marmoratus
ENSDARG00000058818	rbm38	100	71.784	ENSLBEG00000016163	RBM38	99	72.199	Labrus_bergylta
ENSDARG00000058818	rbm38	100	62.249	ENSLBEG00000018878	rbm38	98	62.249	Labrus_bergylta
ENSDARG00000058818	rbm38	100	74.786	ENSLOCG00000003456	rbm38	99	74.786	Lepisosteus_oculatus
ENSDARG00000058818	rbm38	92	64.126	ENSMFAG00000043808	RBM38	78	92.553	Macaca_fascicularis
ENSDARG00000058818	rbm38	92	64.126	ENSMMUG00000031391	RBM38	78	92.553	Macaca_mulatta
ENSDARG00000058818	rbm38	92	64.126	ENSMNEG00000034683	RBM38	78	92.553	Macaca_nemestrina
ENSDARG00000058818	rbm38	100	69.421	ENSMAMG00000020499	RBM38	99	72.314	Mastacembelus_armatus
ENSDARG00000058818	rbm38	100	63.158	ENSMAMG00000024135	rbm38	98	63.158	Mastacembelus_armatus
ENSDARG00000058818	rbm38	100	71.967	ENSMZEG00005000849	-	99	71.967	Maylandia_zebra
ENSDARG00000058818	rbm38	100	63.563	ENSMZEG00005026036	rbm38	98	63.563	Maylandia_zebra
ENSDARG00000058818	rbm38	74	72.778	ENSMAUG00000021211	Rbm38	89	64.126	Mesocricetus_auratus
ENSDARG00000058818	rbm38	92	65.022	ENSMICG00000038011	RBM38	98	65.022	Microcebus_murinus
ENSDARG00000058818	rbm38	74	72.778	ENSMOCG00000008715	Rbm38	89	64.126	Microtus_ochrogaster
ENSDARG00000058818	rbm38	100	68.724	ENSMMOG00000020051	-	99	71.605	Mola_mola
ENSDARG00000058818	rbm38	97	62.771	ENSMODG00000016458	RBM38	92	63.203	Monodelphis_domestica
ENSDARG00000058818	rbm38	71	72.189	ENSMALG00000022327	rbm38	98	59.072	Monopterus_albus
ENSDARG00000058818	rbm38	79	82.540	ENSMALG00000004680	RBM38	82	75.000	Monopterus_albus
ENSDARG00000058818	rbm38	92	61.435	MGP_CAROLIEiJ_G0024745	Rbm38	58	95.556	Mus_caroli
ENSDARG00000058818	rbm38	92	61.435	ENSMUSG00000027510	Rbm38	58	95.556	Mus_musculus
ENSDARG00000058818	rbm38	92	61.435	MGP_PahariEiJ_G0026186	Rbm38	58	95.556	Mus_pahari
ENSDARG00000058818	rbm38	92	61.435	MGP_SPRETEiJ_G0025665	Rbm38	58	95.556	Mus_spretus
ENSDARG00000058818	rbm38	74	72.928	ENSMPUG00000006518	RBM38	94	70.370	Mustela_putorius_furo
ENSDARG00000058818	rbm38	92	64.126	ENSMLUG00000011140	RBM38	98	64.126	Myotis_lucifugus
ENSDARG00000058818	rbm38	100	70.782	ENSNBRG00000022545	-	99	70.782	Neolamprologus_brichardi
ENSDARG00000058818	rbm38	100	63.968	ENSNBRG00000022685	rbm38	98	63.968	Neolamprologus_brichardi
ENSDARG00000058818	rbm38	50	77.885	ENSMEUG00000005475	-	88	74.590	Notamacropus_eugenii
ENSDARG00000058818	rbm38	92	64.126	ENSODEG00000007980	RBM38	88	64.126	Octodon_degus
ENSDARG00000058818	rbm38	100	70.782	ENSONIG00000020324	-	100	70.782	Oreochromis_niloticus
ENSDARG00000058818	rbm38	100	63.968	ENSONIG00000017073	rbm38	100	63.968	Oreochromis_niloticus
ENSDARG00000058818	rbm38	92	64.706	ENSOANG00000009259	RBM38	81	65.000	Ornithorhynchus_anatinus
ENSDARG00000058818	rbm38	99	58.468	ENSORLG00000012154	rbm38	97	58.468	Oryzias_latipes
ENSDARG00000058818	rbm38	82	79.487	ENSORLG00000027180	-	99	69.796	Oryzias_latipes
ENSDARG00000058818	rbm38	82	79.487	ENSORLG00020020751	-	99	69.796	Oryzias_latipes_hni
ENSDARG00000058818	rbm38	99	58.943	ENSORLG00020017871	rbm38	97	58.943	Oryzias_latipes_hni
ENSDARG00000058818	rbm38	82	79.487	ENSORLG00015017040	-	99	70.492	Oryzias_latipes_hsok
ENSDARG00000058818	rbm38	99	59.350	ENSORLG00015012606	rbm38	97	59.350	Oryzias_latipes_hsok
ENSDARG00000058818	rbm38	82	78.974	ENSOMEG00000023912	-	99	70.370	Oryzias_melastigma
ENSDARG00000058818	rbm38	99	60.163	ENSOMEG00000006805	rbm38	97	60.163	Oryzias_melastigma
ENSDARG00000058818	rbm38	92	64.126	ENSOGAG00000029136	RBM38	88	64.126	Otolemur_garnettii
ENSDARG00000058818	rbm38	92	64.574	ENSPPRG00000009507	RBM38	78	91.489	Panthera_pardus
ENSDARG00000058818	rbm38	80	69.588	ENSPTRG00000013661	RBM38	78	92.553	Pan_troglodytes
ENSDARG00000058818	rbm38	63	74.324	ENSPTRG00000045845	-	80	74.324	Pan_troglodytes
ENSDARG00000058818	rbm38	92	64.126	ENSPANG00000020919	-	78	92.553	Papio_anubis
ENSDARG00000058818	rbm38	94	50.885	ENSPANG00000033127	-	92	50.885	Papio_anubis
ENSDARG00000058818	rbm38	100	65.966	ENSPKIG00000018122	-	100	82.051	Paramormyrops_kingsleyae
ENSDARG00000058818	rbm38	100	69.038	ENSPKIG00000025417	rbm38	99	69.038	Paramormyrops_kingsleyae
ENSDARG00000058818	rbm38	93	64.126	ENSPSIG00000011649	RBM38	91	64.126	Pelodiscus_sinensis
ENSDARG00000058818	rbm38	100	63.306	ENSPMGG00000017094	-	99	66.129	Periophthalmus_magnuspinnatus
ENSDARG00000058818	rbm38	99	61.633	ENSPMGG00000011343	rbm38	98	61.633	Periophthalmus_magnuspinnatus
ENSDARG00000058818	rbm38	97	63.636	ENSPCIG00000013648	RBM38	92	63.636	Phascolarctos_cinereus
ENSDARG00000058818	rbm38	83	68.293	ENSPFOG00000011658	rbm38	98	62.550	Poecilia_formosa
ENSDARG00000058818	rbm38	83	67.805	ENSPLAG00000005218	rbm38	98	61.265	Poecilia_latipinna
ENSDARG00000058818	rbm38	85	79.227	ENSPLAG00000002500	-	86	78.302	Poecilia_latipinna
ENSDARG00000058818	rbm38	82	68.317	ENSPMEG00000015770	rbm38	98	62.550	Poecilia_mexicana
ENSDARG00000058818	rbm38	83	68.293	ENSPREG00000007398	rbm38	98	62.550	Poecilia_reticulata
ENSDARG00000058818	rbm38	92	65.022	ENSPCOG00000026201	RBM38	77	92.553	Propithecus_coquereli
ENSDARG00000058818	rbm38	92	41.704	ENSPVAG00000006457	RBM38	89	41.704	Pteropus_vampyrus
ENSDARG00000058818	rbm38	100	63.158	ENSPNYG00000021373	rbm38	98	63.158	Pundamilia_nyererei
ENSDARG00000058818	rbm38	100	71.255	ENSPNYG00000019727	-	100	87.179	Pundamilia_nyererei
ENSDARG00000058818	rbm38	100	72.766	ENSPNAG00000010596	rbm38	100	72.766	Pygocentrus_nattereri
ENSDARG00000058818	rbm38	100	71.186	ENSPNAG00000015123	-	100	75.912	Pygocentrus_nattereri
ENSDARG00000058818	rbm38	92	64.126	ENSRNOG00000006420	Rbm38	89	64.126	Rattus_norvegicus
ENSDARG00000058818	rbm38	93	52.535	ENSRROG00000036388	-	87	52.535	Rhinopithecus_roxellana
ENSDARG00000058818	rbm38	92	63.677	ENSSBOG00000031053	RBM38	88	92.553	Saimiri_boliviensis_boliviensis
ENSDARG00000058818	rbm38	100	63.180	ENSSFOG00015004453	rbm38	99	67.364	Scleropages_formosus
ENSDARG00000058818	rbm38	100	64.777	ENSSDUG00000022611	rbm38	98	64.777	Seriola_dumerili
ENSDARG00000058818	rbm38	82	82.564	ENSSDUG00000021082	RBM38	99	72.428	Seriola_dumerili
ENSDARG00000058818	rbm38	82	82.564	ENSSLDG00000011778	RBM38	99	72.428	Seriola_lalandi_dorsalis
ENSDARG00000058818	rbm38	100	64.777	ENSSLDG00000010845	rbm38	98	64.777	Seriola_lalandi_dorsalis
ENSDARG00000058818	rbm38	82	81.538	ENSSPAG00000020989	RBM38	96	77.830	Stegastes_partitus
ENSDARG00000058818	rbm38	100	64.659	ENSSPAG00000011113	rbm38	98	64.659	Stegastes_partitus
ENSDARG00000058818	rbm38	92	65.022	ENSSSCG00000007504	RBM38	88	65.022	Sus_scrofa
ENSDARG00000058818	rbm38	98	62.343	ENSTRUG00000024954	rbm38	96	61.728	Takifugu_rubripes
ENSDARG00000058818	rbm38	97	68.750	ENSTRUG00000019869	-	97	70.168	Takifugu_rubripes
ENSDARG00000058818	rbm38	92	72.603	ENSTNIG00000007093	-	96	72.603	Tetraodon_nigroviridis
ENSDARG00000058818	rbm38	74	72.928	ENSUAMG00000019780	RBM38	88	64.126	Ursus_americanus
ENSDARG00000058818	rbm38	92	65.919	ENSVVUG00000017246	RBM38	88	65.919	Vulpes_vulpes
ENSDARG00000058818	rbm38	93	62.500	ENSXETG00000011268	rbm38	97	63.229	Xenopus_tropicalis
ENSDARG00000058818	rbm38	84	63.547	ENSXCOG00000017324	-	87	63.547	Xiphophorus_couchianus
ENSDARG00000058818	rbm38	83	69.652	ENSXMAG00000023662	rbm38	98	63.563	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006397	mRNA processing	21873635.	IBA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component