EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000058824 (Gene tree)
Gene ID: 553771
Gene Symbol: mrpl4
Alias: si:dkey-23f9.3|zgc:110034|zgmrpl4
Full Name: mitochondrial ribosomal protein L4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 12006 bases
Position: chr11:11319141-11331146
Accession: ZDB-GENE-050522-388
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000134997	Ribosomal_L4	PF00573.22	3.9e-57	1	1
ENSDARP00000076204	Ribosomal_L4	PF00573.22	4e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000081765	-	1051	-	ENSDARP00000076204	302 (aa)	-	Q503X2
ENSDART00000162612	-	640	-	ENSDARP00000140283	45 (aa)	-	A0A0R4ISU6
ENSDART00000160776	-	477	-	-	- (aa)	-	-
ENSDART00000160247	-	1142	XM_005155747	ENSDARP00000134997	301 (aa)	XP_005155804	A0A0R4ILL2
ENSDART00000173019	-	151	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000058824's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000058824's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000058824	mrpl4	95	64.460	ENSG00000105364	MRPL4	100	79.832	Homo_sapiens
ENSDARG00000058824	mrpl4	100	73.179	ENSAPOG00000010156	mrpl4	100	73.179	Acanthochromis_polyacanthus
ENSDARG00000058824	mrpl4	84	68.504	ENSAMEG00000011808	MRPL4	86	68.504	Ailuropoda_melanoleuca
ENSDARG00000058824	mrpl4	100	69.967	ENSACIG00000011523	mrpl4	100	70.627	Amphilophus_citrinellus
ENSDARG00000058824	mrpl4	95	75.610	ENSAOCG00000018507	mrpl4	89	75.610	Amphiprion_ocellaris
ENSDARG00000058824	mrpl4	100	74.172	ENSAPEG00000006208	mrpl4	100	74.172	Amphiprion_percula
ENSDARG00000058824	mrpl4	100	74.172	ENSATEG00000021694	mrpl4	100	74.172	Anabas_testudineus
ENSDARG00000058824	mrpl4	88	66.917	ENSACAG00000008232	MRPL4	90	66.917	Anolis_carolinensis
ENSDARG00000058824	mrpl4	95	63.415	ENSANAG00000025428	MRPL4	95	63.509	Aotus_nancymaae
ENSDARG00000058824	mrpl4	100	72.848	ENSACLG00000017038	mrpl4	100	72.848	Astatotilapia_calliptera
ENSDARG00000058824	mrpl4	99	77.258	ENSAMXG00000002236	mrpl4	99	77.258	Astyanax_mexicanus
ENSDARG00000058824	mrpl4	73	43.891	WBGene00020717	mrpl-4	74	43.891	Caenorhabditis_elegans
ENSDARG00000058824	mrpl4	100	60.596	ENSCJAG00000005764	MRPL4	99	60.596	Callithrix_jacchus
ENSDARG00000058824	mrpl4	84	69.291	ENSCAFG00000017881	MRPL4	86	69.291	Canis_familiaris
ENSDARG00000058824	mrpl4	84	69.291	ENSCAFG00020024405	MRPL4	84	69.291	Canis_lupus_dingo
ENSDARG00000058824	mrpl4	87	68.539	ENSCHIG00000000516	MRPL4	91	68.539	Capra_hircus
ENSDARG00000058824	mrpl4	84	67.323	ENSTSYG00000034805	MRPL4	86	67.323	Carlito_syrichta
ENSDARG00000058824	mrpl4	67	74.257	ENSCAPG00000000036	MRPL4	100	74.257	Cavia_aperea
ENSDARG00000058824	mrpl4	86	68.702	ENSCPOG00000006506	MRPL4	89	68.702	Cavia_porcellus
ENSDARG00000058824	mrpl4	95	48.084	ENSCCAG00000036054	MRPL4	93	48.432	Cebus_capucinus
ENSDARG00000058824	mrpl4	86	68.702	ENSCLAG00000004552	MRPL4	89	68.702	Chinchilla_lanigera
ENSDARG00000058824	mrpl4	95	64.111	ENSCSAG00000007362	MRPL4	94	64.111	Chlorocebus_sabaeus
ENSDARG00000058824	mrpl4	90	66.296	ENSCPBG00000005432	MRPL4	99	70.161	Chrysemys_picta_bellii
ENSDARG00000058824	mrpl4	99	38.658	ENSCING00000003144	-	99	38.658	Ciona_intestinalis
ENSDARG00000058824	mrpl4	99	37.013	ENSCSAVG00000007005	-	99	37.013	Ciona_savignyi
ENSDARG00000058824	mrpl4	79	45.000	ENSCANG00000033167	MRPL4	59	45.000	Colobus_angolensis_palliatus
ENSDARG00000058824	mrpl4	100	59.211	ENSCGRG00001013642	Mrpl4	99	59.211	Cricetulus_griseus_chok1gshd
ENSDARG00000058824	mrpl4	100	59.211	ENSCGRG00000012922	Mrpl4	99	59.211	Cricetulus_griseus_crigri
ENSDARG00000058824	mrpl4	100	72.185	ENSCSEG00000020580	mrpl4	100	72.185	Cynoglossus_semilaevis
ENSDARG00000058824	mrpl4	50	68.421	ENSCVAG00000017296	mrpl4	88	66.867	Cyprinodon_variegatus
ENSDARG00000058824	mrpl4	85	59.533	ENSDNOG00000010139	-	90	59.533	Dasypus_novemcinctus
ENSDARG00000058824	mrpl4	82	64.516	ENSDNOG00000044263	-	89	63.320	Dasypus_novemcinctus
ENSDARG00000058824	mrpl4	82	68.675	ENSDORG00000003723	Mrpl4	98	68.675	Dipodomys_ordii
ENSDARG00000058824	mrpl4	72	54.167	FBgn0001995	mRpL4	73	54.167	Drosophila_melanogaster
ENSDARG00000058824	mrpl4	83	71.200	ENSETEG00000002009	MRPL4	88	69.466	Echinops_telfairi
ENSDARG00000058824	mrpl4	81	65.021	ENSEBUG00000016597	mrpl4	79	65.021	Eptatretus_burgeri
ENSDARG00000058824	mrpl4	99	60.784	ENSEASG00005010556	MRPL4	88	66.920	Equus_asinus_asinus
ENSDARG00000058824	mrpl4	86	66.920	ENSECAG00000017013	MRPL4	88	66.920	Equus_caballus
ENSDARG00000058824	mrpl4	83	48.016	ENSEEUG00000012011	MRPL4	84	48.221	Erinaceus_europaeus
ENSDARG00000058824	mrpl4	100	73.510	ENSELUG00000010463	mrpl4	100	73.510	Esox_lucius
ENSDARG00000058824	mrpl4	68	68.116	ENSFCAG00000043071	MRPL4	80	68.116	Felis_catus
ENSDARG00000058824	mrpl4	73	67.421	ENSFDAG00000001936	MRPL4	98	67.421	Fukomys_damarensis
ENSDARG00000058824	mrpl4	100	68.212	ENSFHEG00000003126	mrpl4	100	68.212	Fundulus_heteroclitus
ENSDARG00000058824	mrpl4	94	70.775	ENSGMOG00000007229	mrpl4	100	70.775	Gadus_morhua
ENSDARG00000058824	mrpl4	100	69.205	ENSGAFG00000018136	mrpl4	100	69.205	Gambusia_affinis
ENSDARG00000058824	mrpl4	100	68.977	ENSGACG00000019808	mrpl4	100	69.637	Gasterosteus_aculeatus
ENSDARG00000058824	mrpl4	89	66.791	ENSGAGG00000018010	MRPL4	100	61.716	Gopherus_agassizii
ENSDARG00000058824	mrpl4	95	64.460	ENSGGOG00000036529	-	89	64.460	Gorilla_gorilla
ENSDARG00000058824	mrpl4	100	72.848	ENSHBUG00000006332	mrpl4	100	72.848	Haplochromis_burtoni
ENSDARG00000058824	mrpl4	100	60.984	ENSHGLG00000007839	MRPL4	99	60.984	Heterocephalus_glaber_female
ENSDARG00000058824	mrpl4	82	69.880	ENSHGLG00100002720	MRPL4	90	69.880	Heterocephalus_glaber_male
ENSDARG00000058824	mrpl4	94	65.493	ENSHCOG00000002016	mrpl4	96	66.197	Hippocampus_comes
ENSDARG00000058824	mrpl4	100	80.399	ENSIPUG00000011705	mrpl4	96	80.399	Ictalurus_punctatus
ENSDARG00000058824	mrpl4	57	75.581	ENSSTOG00000030121	MRPL4	86	75.581	Ictidomys_tridecemlineatus
ENSDARG00000058824	mrpl4	84	65.613	ENSJJAG00000010573	Mrpl4	86	65.613	Jaculus_jaculus
ENSDARG00000058824	mrpl4	100	71.192	ENSKMAG00000012769	mrpl4	99	71.192	Kryptolebias_marmoratus
ENSDARG00000058824	mrpl4	100	73.510	ENSLBEG00000000848	mrpl4	100	73.510	Labrus_bergylta
ENSDARG00000058824	mrpl4	99	67.000	ENSLACG00000009255	MRPL4	92	67.000	Latimeria_chalumnae
ENSDARG00000058824	mrpl4	100	72.093	ENSLOCG00000016632	mrpl4	99	72.093	Lepisosteus_oculatus
ENSDARG00000058824	mrpl4	88	65.455	ENSLAFG00000015366	MRPL4	94	65.455	Loxodonta_africana
ENSDARG00000058824	mrpl4	95	64.460	ENSMFAG00000003526	MRPL4	89	64.460	Macaca_fascicularis
ENSDARG00000058824	mrpl4	95	64.460	ENSMMUG00000001219	MRPL4	94	64.460	Macaca_mulatta
ENSDARG00000058824	mrpl4	100	62.252	ENSMNEG00000040746	MRPL4	99	62.252	Macaca_nemestrina
ENSDARG00000058824	mrpl4	95	54.007	ENSMLEG00000041712	MRPL4	94	54.007	Mandrillus_leucophaeus
ENSDARG00000058824	mrpl4	100	69.536	ENSMAMG00000001736	mrpl4	100	70.199	Mastacembelus_armatus
ENSDARG00000058824	mrpl4	100	72.848	ENSMZEG00005005809	mrpl4	100	72.848	Maylandia_zebra
ENSDARG00000058824	mrpl4	100	60.265	ENSMAUG00000013451	Mrpl4	99	60.265	Mesocricetus_auratus
ENSDARG00000058824	mrpl4	84	69.170	ENSMICG00000010267	MRPL4	94	64.111	Microcebus_murinus
ENSDARG00000058824	mrpl4	100	59.272	ENSMOCG00000014755	Mrpl4	99	59.272	Microtus_ochrogaster
ENSDARG00000058824	mrpl4	100	64.570	ENSMMOG00000013673	mrpl4	100	65.232	Mola_mola
ENSDARG00000058824	mrpl4	84	72.047	ENSMODG00000005476	MRPL4	84	72.047	Monodelphis_domestica
ENSDARG00000058824	mrpl4	100	68.710	ENSMALG00000002391	mrpl4	100	68.710	Monopterus_albus
ENSDARG00000058824	mrpl4	82	67.068	MGP_CAROLIEiJ_G0031854	Mrpl4	85	67.068	Mus_caroli
ENSDARG00000058824	mrpl4	99	59.333	ENSMUSG00000003299	Mrpl4	97	59.333	Mus_musculus
ENSDARG00000058824	mrpl4	95	60.616	MGP_PahariEiJ_G0014720	Mrpl4	99	60.616	Mus_pahari
ENSDARG00000058824	mrpl4	82	67.068	MGP_SPRETEiJ_G0032978	Mrpl4	85	67.068	Mus_spretus
ENSDARG00000058824	mrpl4	84	68.898	ENSMPUG00000006825	MRPL4	86	68.898	Mustela_putorius_furo
ENSDARG00000058824	mrpl4	85	68.872	ENSMLUG00000012280	MRPL4	100	68.872	Myotis_lucifugus
ENSDARG00000058824	mrpl4	84	62.846	ENSNGAG00000014705	Mrpl4	90	62.846	Nannospalax_galili
ENSDARG00000058824	mrpl4	100	72.848	ENSNBRG00000004804	mrpl4	100	72.848	Neolamprologus_brichardi
ENSDARG00000058824	mrpl4	68	51.942	ENSNLEG00000012155	-	61	57.463	Nomascus_leucogenys
ENSDARG00000058824	mrpl4	83	59.843	ENSMEUG00000002199	MRPL4	98	59.843	Notamacropus_eugenii
ENSDARG00000058824	mrpl4	100	61.921	ENSOPRG00000005735	MRPL4	98	61.921	Ochotona_princeps
ENSDARG00000058824	mrpl4	84	67.717	ENSODEG00000016194	MRPL4	88	67.717	Octodon_degus
ENSDARG00000058824	mrpl4	100	72.848	ENSONIG00000000136	mrpl4	100	72.848	Oreochromis_niloticus
ENSDARG00000058824	mrpl4	69	74.038	ENSOANG00000013891	MRPL4	100	74.038	Ornithorhynchus_anatinus
ENSDARG00000058824	mrpl4	100	70.861	ENSORLG00000000085	mrpl4	96	71.523	Oryzias_latipes
ENSDARG00000058824	mrpl4	100	70.199	ENSORLG00020020476	mrpl4	100	70.861	Oryzias_latipes_hni
ENSDARG00000058824	mrpl4	100	70.530	ENSORLG00015020892	mrpl4	100	71.192	Oryzias_latipes_hsok
ENSDARG00000058824	mrpl4	86	69.202	ENSOGAG00000011051	MRPL4	89	69.202	Otolemur_garnettii
ENSDARG00000058824	mrpl4	77	73.276	ENSOARG00000015602	MRPL4	91	67.045	Ovis_aries
ENSDARG00000058824	mrpl4	95	64.808	ENSPPAG00000041740	-	89	64.808	Pan_paniscus
ENSDARG00000058824	mrpl4	68	68.599	ENSPPRG00000004312	MRPL4	81	68.599	Panthera_pardus
ENSDARG00000058824	mrpl4	68	68.599	ENSPTIG00000010912	MRPL4	79	68.599	Panthera_tigris_altaica
ENSDARG00000058824	mrpl4	95	64.460	ENSPTRG00000010462	MRPL4	89	64.460	Pan_troglodytes
ENSDARG00000058824	mrpl4	95	64.111	ENSPANG00000001265	MRPL4	89	64.111	Papio_anubis
ENSDARG00000058824	mrpl4	100	70.764	ENSPKIG00000008086	mrpl4	99	70.764	Paramormyrops_kingsleyae
ENSDARG00000058824	mrpl4	95	72.028	ENSPMGG00000002329	mrpl4	99	72.183	Periophthalmus_magnuspinnatus
ENSDARG00000058824	mrpl4	100	58.940	ENSPEMG00000017474	Mrpl4	99	58.940	Peromyscus_maniculatus_bairdii
ENSDARG00000058824	mrpl4	82	70.850	ENSPMAG00000007691	mrpl4	96	70.850	Petromyzon_marinus
ENSDARG00000058824	mrpl4	100	68.874	ENSPFOG00000013329	mrpl4	100	68.874	Poecilia_formosa
ENSDARG00000058824	mrpl4	100	68.543	ENSPLAG00000012864	mrpl4	100	68.543	Poecilia_latipinna
ENSDARG00000058824	mrpl4	100	68.874	ENSPMEG00000004937	mrpl4	100	68.874	Poecilia_mexicana
ENSDARG00000058824	mrpl4	99	69.231	ENSPREG00000021621	mrpl4	100	70.922	Poecilia_reticulata
ENSDARG00000058824	mrpl4	95	64.808	ENSPPYG00000009547	MRPL4	89	64.808	Pongo_abelii
ENSDARG00000058824	mrpl4	77	60.684	ENSPCAG00000002385	MRPL4	97	60.684	Procavia_capensis
ENSDARG00000058824	mrpl4	84	64.427	ENSPCOG00000016733	MRPL4	85	64.427	Propithecus_coquereli
ENSDARG00000058824	mrpl4	100	45.364	ENSPVAG00000003681	MRPL4	94	45.364	Pteropus_vampyrus
ENSDARG00000058824	mrpl4	100	72.517	ENSPNYG00000023505	mrpl4	100	72.517	Pundamilia_nyererei
ENSDARG00000058824	mrpl4	100	84.437	ENSPNAG00000011785	mrpl4	89	84.437	Pygocentrus_nattereri
ENSDARG00000058824	mrpl4	100	59.272	ENSRNOG00000020659	Mrpl4	99	59.272	Rattus_norvegicus
ENSDARG00000058824	mrpl4	67	74.752	ENSRBIG00000032283	-	95	73.913	Rhinopithecus_bieti
ENSDARG00000058824	mrpl4	95	64.460	ENSRROG00000003982	MRPL4	94	64.460	Rhinopithecus_roxellana
ENSDARG00000058824	mrpl4	82	68.675	ENSSBOG00000020666	MRPL4	85	68.675	Saimiri_boliviensis_boliviensis
ENSDARG00000058824	mrpl4	97	65.986	ENSSHAG00000008539	MRPL4	96	65.986	Sarcophilus_harrisii
ENSDARG00000058824	mrpl4	100	70.764	ENSSFOG00015003308	mrpl4	99	70.764	Scleropages_formosus
ENSDARG00000058824	mrpl4	99	65.449	ENSSMAG00000021118	mrpl4	98	66.113	Scophthalmus_maximus
ENSDARG00000058824	mrpl4	100	72.848	ENSSDUG00000002078	mrpl4	100	72.848	Seriola_dumerili
ENSDARG00000058824	mrpl4	100	72.848	ENSSLDG00000015083	mrpl4	100	72.848	Seriola_lalandi_dorsalis
ENSDARG00000058824	mrpl4	100	73.510	ENSSPAG00000010120	mrpl4	100	73.510	Stegastes_partitus
ENSDARG00000058824	mrpl4	84	69.565	ENSSSCG00000013656	MRPL4	90	70.281	Sus_scrofa
ENSDARG00000058824	mrpl4	100	72.848	ENSTRUG00000008532	mrpl4	100	72.848	Takifugu_rubripes
ENSDARG00000058824	mrpl4	100	67.987	ENSTNIG00000003265	mrpl4	100	68.647	Tetraodon_nigroviridis
ENSDARG00000058824	mrpl4	68	67.317	ENSTBEG00000006336	MRPL4	83	67.317	Tupaia_belangeri
ENSDARG00000058824	mrpl4	86	66.160	ENSTTRG00000009532	MRPL4	85	66.160	Tursiops_truncatus
ENSDARG00000058824	mrpl4	72	65.158	ENSUAMG00000020392	MRPL4	72	65.158	Ursus_americanus
ENSDARG00000058824	mrpl4	84	68.110	ENSUMAG00000025105	MRPL4	86	68.110	Ursus_maritimus
ENSDARG00000058824	mrpl4	66	58.500	ENSVPAG00000006123	MRPL4	66	58.706	Vicugna_pacos
ENSDARG00000058824	mrpl4	84	68.898	ENSVVUG00000028961	MRPL4	86	68.898	Vulpes_vulpes
ENSDARG00000058824	mrpl4	94	67.845	ENSXETG00000022060	mrpl4	96	67.247	Xenopus_tropicalis
ENSDARG00000058824	mrpl4	100	66.447	ENSXCOG00000011438	mrpl4	100	66.447	Xiphophorus_couchianus
ENSDARG00000058824	mrpl4	100	68.543	ENSXMAG00000030102	mrpl4	100	68.543	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0005762	mitochondrial large ribosomal subunit	-	ISS	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	IEA	Process