EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000059246 (Gene tree)
Gene ID
560522
Gene Symbol
hnrnpd
Alias
wu:fa28b06|zgc:162951
Full Name
heterogeneous nuclear ribonucleoprotein D
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
19756 bases
Position
chr10:5000623-5020378
Accession
ZDB-GENE-070424-97
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000153486CBFNTPF08143.111.4e-0811
ENSDARP00000092188CBFNTPF08143.111.4e-0811
ENSDARP00000153486RRM_1PF00076.221.9e-3312
ENSDARP00000153486RRM_1PF00076.221.9e-3322
ENSDARP00000092188RRM_1PF00076.221.9e-3312
ENSDARP00000092188RRM_1PF00076.221.9e-3322
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000138843-978--- (aa)--
ENSDART00000101414-1552XM_005155544ENSDARP00000092188314 (aa)XP_005155601F1Q8A5
ENSDART00000191857-1867XM_005155546ENSDARP00000153486310 (aa)XP_005155603A0A2R8QHK1
Gene Model
Click here to download ENSDARG00000059246's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000059246's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000059246hnrnpd7632.171ENSDARG00000070846dazap19440.299
ENSDARG00000059246hnrnpd9260.135ENSDARG00000003429hnrnpdl9563.830
ENSDARG00000059246hnrnpd5643.646ENSDARG00000059351hnrnpa38440.845
ENSDARG00000059246hnrnpd9263.036ENSDARG00000007960hnrnpaba9958.997
ENSDARG00000059246hnrnpd5142.667ENSDARG00000036162hnrnpa0b7442.667
ENSDARG00000059246hnrnpd5132.000ENSDARG00000097753slirp8631.707
ENSDARG00000059246hnrnpd5033.962ENSDARG00000004452tardbpl5133.962
ENSDARG00000059246hnrnpd5434.682ENSDARG00000089302hnrnpa0a6835.577
ENSDARG00000059246hnrnpd7545.122ENSDARG00000032614msi2b9651.220
ENSDARG00000059246hnrnpd5845.783ENSDARG00000033901msi2a5241.509
ENSDARG00000059246hnrnpd7135.088ENSDARG00000036161hnrnpa0l7133.645
ENSDARG00000059246hnrnpd7146.988ENSDARG00000010710msi15746.988
ENSDARG00000059246hnrnpd10060.188ENSDARG00000099865hnrnpabb10061.442
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000059246hnrnpd8986.022ENSG00000138668HNRNPD10090.090Homo_sapiens
ENSDARG00000059246hnrnpd10083.019ENSAPOG00000006184hnrnpd10086.207Acanthochromis_polyacanthus
ENSDARG00000059246hnrnpd9277.097ENSAMEG00000005158HNRNPD9779.808Ailuropoda_melanoleuca
ENSDARG00000059246hnrnpd8284.884ENSACIG00000008353hnrnpd8384.884Amphilophus_citrinellus
ENSDARG00000059246hnrnpd10083.333ENSAOCG00000014191hnrnpd10086.520Amphiprion_ocellaris
ENSDARG00000059246hnrnpd10083.019ENSAPEG00000005603hnrnpd10086.207Amphiprion_percula
ENSDARG00000059246hnrnpd10083.019ENSATEG00000007097hnrnpd10085.849Anabas_testudineus
ENSDARG00000059246hnrnpd8786.923ENSACAG00000010342HNRNPD10086.154Anolis_carolinensis
ENSDARG00000059246hnrnpd8985.816ENSANAG00000035221HNRNPD8486.364Aotus_nancymaae
ENSDARG00000059246hnrnpd8791.892ENSACLG00000026497hnrnpd10091.892Astatotilapia_calliptera
ENSDARG00000059246hnrnpd10085.489ENSACLG00000025213hnrnpd10085.849Astatotilapia_calliptera
ENSDARG00000059246hnrnpd10090.446ENSAMXG00000001477hnrnpd10092.038Astyanax_mexicanus
ENSDARG00000059246hnrnpd8980.537ENSBTAG00000013952HNRNPD8580.921Bos_taurus
ENSDARG00000059246hnrnpd8986.022ENSCJAG00000015165HNRNPD8486.667Callithrix_jacchus
ENSDARG00000059246hnrnpd8980.537ENSCAFG00000025045HNRNPD8680.000Canis_familiaris
ENSDARG00000059246hnrnpd8980.537ENSCAFG00020010713HNRNPD8680.000Canis_lupus_dingo
ENSDARG00000059246hnrnpd8986.022ENSCHIG00000022317HNRNPD8684.880Capra_hircus
ENSDARG00000059246hnrnpd8784.878ENSTSYG00000010395HNRNPD10086.829Carlito_syrichta
ENSDARG00000059246hnrnpd8679.389ENSCPOG00000040484HNRNPD7780.916Cavia_porcellus
ENSDARG00000059246hnrnpd6460.697ENSCCAG00000021563-7164.748Cebus_capucinus
ENSDARG00000059246hnrnpd8986.022ENSCCAG00000024528HNRNPD8486.667Cebus_capucinus
ENSDARG00000059246hnrnpd8986.022ENSCATG00000039829HNRNPD8486.667Cercocebus_atys
ENSDARG00000059246hnrnpd8886.331ENSCLAG00000006540HNRNPD9287.770Chinchilla_lanigera
ENSDARG00000059246hnrnpd8980.537ENSCSAG00000004463HNRNPD8581.250Chlorocebus_sabaeus
ENSDARG00000059246hnrnpd8683.395ENSCHOG00000000045HNRNPD9884.871Choloepus_hoffmanni
ENSDARG00000059246hnrnpd8783.883ENSCPBG00000008025HNRNPD8585.965Chrysemys_picta_bellii
ENSDARG00000059246hnrnpd8986.380ENSCANG00000018501HNRNPD8487.018Colobus_angolensis_palliatus
ENSDARG00000059246hnrnpd8986.380ENSCGRG00001014634Hnrnpd8685.567Cricetulus_griseus_chok1gshd
ENSDARG00000059246hnrnpd9180.070ENSCGRG00000007563Hnrnpd9684.926Cricetulus_griseus_crigri
ENSDARG00000059246hnrnpd10081.505ENSCSEG00000010909hnrnpd10077.116Cynoglossus_semilaevis
ENSDARG00000059246hnrnpd10084.227ENSCVAG00000019790hnrnpd10084.227Cyprinodon_variegatus
ENSDARG00000059246hnrnpd5774.432ENSDNOG00000041055-6974.432Dasypus_novemcinctus
ENSDARG00000059246hnrnpd7171.946ENSDNOG00000045079-7370.136Dasypus_novemcinctus
ENSDARG00000059246hnrnpd8683.764ENSDNOG00000013830-7685.240Dasypus_novemcinctus
ENSDARG00000059246hnrnpd8886.331ENSDORG00000012507Hnrnpd9985.223Dipodomys_ordii
ENSDARG00000059246hnrnpd8779.452ENSETEG00000016709HNRNPD8680.323Echinops_telfairi
ENSDARG00000059246hnrnpd8986.022ENSEASG00005016278HNRNPD8685.223Equus_asinus_asinus
ENSDARG00000059246hnrnpd8980.537ENSECAG00000009344HNRNPD8680.000Equus_caballus
ENSDARG00000059246hnrnpd8972.757ENSEEUG00000007552HNRNPD8670.645Erinaceus_europaeus
ENSDARG00000059246hnrnpd7881.048ENSELUG00000003230hnrnpd8181.818Esox_lucius
ENSDARG00000059246hnrnpd8984.229ENSFCAG00000027404HNRNPD8680.000Felis_catus
ENSDARG00000059246hnrnpd8886.331ENSFALG00000005716HNRNPD8884.746Ficedula_albicollis
ENSDARG00000059246hnrnpd8980.851ENSFDAG00000007958HNRNPD8382.270Fukomys_damarensis
ENSDARG00000059246hnrnpd10081.132ENSFHEG00000006838hnrnpd10084.326Fundulus_heteroclitus
ENSDARG00000059246hnrnpd10075.389ENSGMOG00000018481hnrnpd10072.783Gadus_morhua
ENSDARG00000059246hnrnpd8686.154ENSGALG00000011184HNRNPD10087.692Gallus_gallus
ENSDARG00000059246hnrnpd10082.555ENSGAFG00000003714hnrnpd10082.609Gambusia_affinis
ENSDARG00000059246hnrnpd10076.852ENSGACG00000015669hnrnpd10080.308Gasterosteus_aculeatus
ENSDARG00000059246hnrnpd8778.425ENSGAGG00000003656HNRNPD10074.344Gopherus_agassizii
ENSDARG00000059246hnrnpd8686.207ENSGGOG00000026760HNRNPD9487.739Gorilla_gorilla
ENSDARG00000059246hnrnpd10085.489ENSHBUG00000011794hnrnpd10085.849Haplochromis_burtoni
ENSDARG00000059246hnrnpd8984.043ENSHGLG00000004214HNRNPD8685.223Heterocephalus_glaber_female
ENSDARG00000059246hnrnpd8686.207ENSHGLG00100005996HNRNPD10087.692Heterocephalus_glaber_male
ENSDARG00000059246hnrnpd10075.312ENSHCOG00000000087hnrnpd9776.562Hippocampus_comes
ENSDARG00000059246hnrnpd9982.748ENSIPUG00000024954hnrnpd9987.821Ictalurus_punctatus
ENSDARG00000059246hnrnpd8986.022ENSSTOG00000013970HNRNPD8585.223Ictidomys_tridecemlineatus
ENSDARG00000059246hnrnpd8986.022ENSJJAG00000023387Hnrnpd9884.880Jaculus_jaculus
ENSDARG00000059246hnrnpd10080.818ENSKMAG00000004310hnrnpd10083.648Kryptolebias_marmoratus
ENSDARG00000059246hnrnpd10084.227ENSLBEG00000027508hnrnpd10084.591Labrus_bergylta
ENSDARG00000059246hnrnpd10080.952ENSLACG00000005306HNRNPD10080.952Latimeria_chalumnae
ENSDARG00000059246hnrnpd10084.713ENSLOCG00000010743hnrnpd10084.127Lepisosteus_oculatus
ENSDARG00000059246hnrnpd8683.764ENSLAFG00000016483HNRNPD9884.926Loxodonta_africana
ENSDARG00000059246hnrnpd8986.022ENSMFAG00000031674HNRNPD8486.667Macaca_fascicularis
ENSDARG00000059246hnrnpd8986.022ENSMNEG00000028199HNRNPD8486.667Macaca_nemestrina
ENSDARG00000059246hnrnpd8986.022ENSMLEG00000028370HNRNPD8486.667Mandrillus_leucophaeus
ENSDARG00000059246hnrnpd10085.535ENSMAMG00000004971hnrnpd10085.535Mastacembelus_armatus
ENSDARG00000059246hnrnpd10085.489ENSMZEG00005007558hnrnpd10085.849Maylandia_zebra
ENSDARG00000059246hnrnpd8686.207ENSMGAG00000008051HNRNPD10087.739Meleagris_gallopavo
ENSDARG00000059246hnrnpd8986.380ENSMAUG00000008830Hnrnpd8685.567Mesocricetus_auratus
ENSDARG00000059246hnrnpd8786.813ENSMICG00000010984HNRNPD10080.062Microcebus_murinus
ENSDARG00000059246hnrnpd8985.816ENSMOCG00000021398Hnrnpd8685.223Microtus_ochrogaster
ENSDARG00000059246hnrnpd10080.564ENSMMOG00000008627hnrnpd10079.937Mola_mola
ENSDARG00000059246hnrnpd8980.268ENSMODG00000011898HNRNPD8478.931Monodelphis_domestica
ENSDARG00000059246hnrnpd10081.073ENSMALG00000016024hnrnpd10083.912Monopterus_albus
ENSDARG00000059246hnrnpd8986.380MGP_CAROLIEiJ_G0027446Hnrnpd10092.000Mus_caroli
ENSDARG00000059246hnrnpd8986.380ENSMUSG00000000568Hnrnpd10092.000Mus_musculus
ENSDARG00000059246hnrnpd8984.588MGP_PahariEiJ_G0017224Hnrnpd10092.000Mus_pahari
ENSDARG00000059246hnrnpd8986.380MGP_SPRETEiJ_G0028443Hnrnpd10092.000Mus_spretus
ENSDARG00000059246hnrnpd8683.764ENSMPUG00000014782HNRNPD9885.240Mustela_putorius_furo
ENSDARG00000059246hnrnpd8973.490ENSMLUG00000010628HNRNPD8772.903Myotis_lucifugus
ENSDARG00000059246hnrnpd8986.380ENSNGAG00000013451Hnrnpd8785.567Nannospalax_galili
ENSDARG00000059246hnrnpd10085.804ENSNBRG00000019548hnrnpd10086.164Neolamprologus_brichardi
ENSDARG00000059246hnrnpd8985.409ENSNLEG00000008600HNRNPD8486.833Nomascus_leucogenys
ENSDARG00000059246hnrnpd6883.030ENSMEUG00000006804-5885.455Notamacropus_eugenii
ENSDARG00000059246hnrnpd8879.054ENSOPRG00000009336HNRNPD8677.994Ochotona_princeps
ENSDARG00000059246hnrnpd8886.331ENSODEG00000001897HNRNPD10080.251Octodon_degus
ENSDARG00000059246hnrnpd10085.489ENSONIG00000015390hnrnpd10085.849Oreochromis_niloticus
ENSDARG00000059246hnrnpd8686.538ENSOANG00000001932HNRNPD10088.077Ornithorhynchus_anatinus
ENSDARG00000059246hnrnpd8683.764ENSOCUG00000001357HNRNPD9884.926Oryctolagus_cuniculus
ENSDARG00000059246hnrnpd10079.560ENSORLG00000001833hnrnpd10081.191Oryzias_latipes
ENSDARG00000059246hnrnpd9082.517ENSORLG00020014780hnrnpd8385.315Oryzias_latipes_hni
ENSDARG00000059246hnrnpd10079.560ENSORLG00015002382hnrnpd10081.191Oryzias_latipes_hsok
ENSDARG00000059246hnrnpd10081.847ENSOMEG00000018558hnrnpd10085.079Oryzias_melastigma
ENSDARG00000059246hnrnpd8980.537ENSOGAG00000004075HNRNPD8581.250Otolemur_garnettii
ENSDARG00000059246hnrnpd8683.764ENSOARG00000000579HNRNPD9885.240Ovis_aries
ENSDARG00000059246hnrnpd9083.509ENSPPAG00000035750HNRNPD10086.829Pan_paniscus
ENSDARG00000059246hnrnpd8986.022ENSPPRG00000012258HNRNPD8685.223Panthera_pardus
ENSDARG00000059246hnrnpd9083.509ENSPTIG00000019434HNRNPD9986.667Panthera_tigris_altaica
ENSDARG00000059246hnrnpd8986.022ENSPTRG00000016215HNRNPD8486.667Pan_troglodytes
ENSDARG00000059246hnrnpd8986.022ENSPANG00000011785HNRNPD8486.667Papio_anubis
ENSDARG00000059246hnrnpd10085.987ENSPKIG00000025512hnrnpd10085.669Paramormyrops_kingsleyae
ENSDARG00000059246hnrnpd6985.922ENSPSIG00000017029HNRNPD7988.500Pelodiscus_sinensis
ENSDARG00000059246hnrnpd9173.129ENSPMGG00000017169hnrnpd8577.647Periophthalmus_magnuspinnatus
ENSDARG00000059246hnrnpd9180.000ENSPEMG00000014804Hnrnpd9181.379Peromyscus_maniculatus_bairdii
ENSDARG00000059246hnrnpd9084.561ENSPCIG00000003112HNRNPD8383.893Phascolarctos_cinereus
ENSDARG00000059246hnrnpd10082.390ENSPFOG00000002596hnrnpd10085.580Poecilia_formosa
ENSDARG00000059246hnrnpd10082.390ENSPLAG00000004297hnrnpd10085.580Poecilia_latipinna
ENSDARG00000059246hnrnpd10082.390ENSPMEG00000000152hnrnpd10085.580Poecilia_mexicana
ENSDARG00000059246hnrnpd8790.385ENSPREG00000018081hnrnpd9590.385Poecilia_reticulata
ENSDARG00000059246hnrnpd6173.228ENSPPYG00000020411-9069.863Pongo_abelii
ENSDARG00000059246hnrnpd8980.537ENSPPYG00000014885HNRNPD8581.250Pongo_abelii
ENSDARG00000059246hnrnpd8976.923ENSPCAG00000002182HNRNPD8580.000Procavia_capensis
ENSDARG00000059246hnrnpd8986.022ENSPCOG00000021331HNRNPD8685.223Propithecus_coquereli
ENSDARG00000059246hnrnpd8974.497ENSPVAG00000000003HNRNPD8677.742Pteropus_vampyrus
ENSDARG00000059246hnrnpd10085.489ENSPNYG00000004884hnrnpd10085.849Pundamilia_nyererei
ENSDARG00000059246hnrnpd10090.000ENSPNAG00000016368hnrnpd10089.677Pygocentrus_nattereri
ENSDARG00000059246hnrnpd8985.106ENSRNOG00000002292Hnrnpd8485.965Rattus_norvegicus
ENSDARG00000059246hnrnpd8986.022ENSRBIG00000035345HNRNPD8486.667Rhinopithecus_bieti
ENSDARG00000059246hnrnpd8986.022ENSRROG00000011888HNRNPD8486.667Rhinopithecus_roxellana
ENSDARG00000059246hnrnpd8986.022ENSSBOG00000032881HNRNPD8486.667Saimiri_boliviensis_boliviensis
ENSDARG00000059246hnrnpd8683.764ENSSHAG00000013312HNRNPD9885.240Sarcophilus_harrisii
ENSDARG00000059246hnrnpd10087.261ENSSFOG00015005913hnrnpd10087.261Scleropages_formosus
ENSDARG00000059246hnrnpd10078.750ENSSMAG00000009686hnrnpd10082.500Scophthalmus_maximus
ENSDARG00000059246hnrnpd10084.591ENSSDUG00000010792hnrnpd10084.953Seriola_dumerili
ENSDARG00000059246hnrnpd10079.874ENSSLDG00000015962hnrnpd10083.699Seriola_lalandi_dorsalis
ENSDARG00000059246hnrnpd8682.288ENSSARG00000006883HNRNPD9883.764Sorex_araneus
ENSDARG00000059246hnrnpd8686.154ENSSPUG00000013677HNRNPD10081.413Sphenodon_punctatus
ENSDARG00000059246hnrnpd10082.704ENSSPAG00000021014hnrnpd10085.893Stegastes_partitus
ENSDARG00000059246hnrnpd8985.663ENSSSCG00000009249HNRNPD8684.880Sus_scrofa
ENSDARG00000059246hnrnpd8781.164ENSTGUG00000002858HNRNPD9280.921Taeniopygia_guttata
ENSDARG00000059246hnrnpd10080.503ENSTRUG00000018450hnrnpd10079.747Takifugu_rubripes
ENSDARG00000059246hnrnpd7580.085ENSTNIG00000013499hnrnpd9086.175Tetraodon_nigroviridis
ENSDARG00000059246hnrnpd8779.705ENSTBEG00000002327HNRNPD9880.882Tupaia_belangeri
ENSDARG00000059246hnrnpd8980.537ENSTTRG00000007592HNRNPD8680.000Tursiops_truncatus
ENSDARG00000059246hnrnpd8681.919ENSUAMG00000011374HNRNPD7385.240Ursus_americanus
ENSDARG00000059246hnrnpd8681.919ENSUMAG00000008685HNRNPD8385.240Ursus_maritimus
ENSDARG00000059246hnrnpd8686.207ENSVPAG00000004374HNRNPD10087.739Vicugna_pacos
ENSDARG00000059246hnrnpd8980.537ENSVVUG00000024658HNRNPD8680.000Vulpes_vulpes
ENSDARG00000059246hnrnpd8978.853ENSXETG00000012569hnrnpd9377.091Xenopus_tropicalis
ENSDARG00000059246hnrnpd8786.154ENSXCOG00000017639hnrnpd10089.615Xiphophorus_couchianus
ENSDARG00000059246hnrnpd10081.505ENSXMAG00000019151hnrnpd10084.688Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003680AT DNA binding21873635.IBAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005654nucleoplasm21873635.IBAComponent
GO:0008150biological_process-NDProcess
GO:0035925mRNA 3'-UTR AU-rich region binding21873635.IBAFunction
GO:0043565sequence-specific DNA binding21873635.IBAFunction
GO:1990837sequence-specific double-stranded DNA binding21873635.IBAFunction
GO:1990904ribonucleoprotein complex21873635.IBAComponent

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us