EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000059259 (Gene tree)
Gene ID
321035
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein%2C cytoplasmic 4 (inducible form)
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
23015 bases
Position
chr17:25303671-25326685
Accession
ZDB-GENE-030131-9663
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000140050PABPPF00658.182.6e-3111
ENSDARP00000076763PABPPF00658.181.1e-2611
ENSDARP00000076763RRM_5PF13893.66.9e-0911
ENSDARP00000140050RRM_5PF13893.68.9e-0911
ENSDARP00000076763RRM_1PF00076.223.3e-9114
ENSDARP00000076763RRM_1PF00076.223.3e-9124
ENSDARP00000076763RRM_1PF00076.223.3e-9134
ENSDARP00000076763RRM_1PF00076.223.3e-9144
ENSDARP00000140050RRM_1PF00076.224.2e-9114
ENSDARP00000140050RRM_1PF00076.224.2e-9124
ENSDARP00000140050RRM_1PF00076.224.2e-9134
ENSDARP00000140050RRM_1PF00076.224.2e-9144
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000082327-2204-ENSDARP00000076763605 (aa)-F1QUU2
ENSDART00000168822-4220XM_021467109ENSDARP00000140050637 (aa)XP_021322784Q7T3G5
Gene Model
Click here to download ENSDARG00000059259's gene model file
Pathways
Pathway IDPathway NameSource
dre03013RNA transportKEGG
dre03015mRNA surveillance pathwayKEGG
dre03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000059259's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000059259pabpc46531.148ENSDARG00000044574rbms38933.010
ENSDARG00000059259pabpc46136.145ENSDARG00000040732elavl210036.765
ENSDARG00000059259pabpc46336.145ENSDARG00000014420elavl39236.145
ENSDARG00000059259pabpc46030.337ENSDARG00000002710ncl7930.337
ENSDARG00000059259pabpc45538.372ENSDARG00000002131celf27138.372
ENSDARG00000059259pabpc46032.450ENSDARG00000038695elavl1a9532.450
ENSDARG00000059259pabpc45733.766ENSDARG00000032175puf60a7330.093
ENSDARG00000059259pabpc45931.395ENSDARG00000001241puf60b7031.395
ENSDARG00000059259pabpc49976.442ENSDARG00000017219pabpc1a9976.153
ENSDARG00000059259pabpc49969.193ENSDARG00000002597pabpc1l9084.677
ENSDARG00000059259pabpc46233.981ENSDARG00000044179rbms2a5334.737
ENSDARG00000059259pabpc49976.547ENSDARG00000021140pabpc1b9991.406
ENSDARG00000059259pabpc46130.928ENSDARG00000089302hnrnpa0a5931.959
ENSDARG00000059259pabpc46134.940ENSDARG00000045639elavl48234.940
ENSDARG00000059259pabpc45431.915ENSDARG00000036161hnrnpa0l6030.769
ENSDARG00000059259pabpc45732.203ENSDARG00000036162hnrnpa0b6634.906
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000059259pabpc410085.691ENSG00000090621PABPC49997.297Homo_sapiens
ENSDARG00000059259pabpc410092.727ENSAPOG00000001161pabpc49892.982Acanthochromis_polyacanthus
ENSDARG00000059259pabpc410082.104ENSAMEG00000011535-9981.487Ailuropoda_melanoleuca
ENSDARG00000059259pabpc49949.752ENSAMEG00000015083-9849.123Ailuropoda_melanoleuca
ENSDARG00000059259pabpc410092.727ENSACIG00000023343pabpc49892.982Amphilophus_citrinellus
ENSDARG00000059259pabpc410092.562ENSAOCG00000021529pabpc49892.823Amphiprion_ocellaris
ENSDARG00000059259pabpc410092.562ENSAPEG00000019196pabpc49892.823Amphiprion_percula
ENSDARG00000059259pabpc410092.244ENSATEG00000007402pabpc49892.516Anabas_testudineus
ENSDARG00000059259pabpc410088.158ENSAPLG00000009729-9987.639Anas_platyrhynchos
ENSDARG00000059259pabpc49987.500ENSACAG00000002544PABPC49986.762Anolis_carolinensis
ENSDARG00000059259pabpc410085.691ENSANAG00000025079PABPC49984.921Aotus_nancymaae
ENSDARG00000059259pabpc410092.727ENSACLG00000019558pabpc49892.982Astatotilapia_calliptera
ENSDARG00000059259pabpc410089.256ENSAMXG00000018779pabpc49989.650Astyanax_mexicanus
ENSDARG00000059259pabpc410083.119ENSBTAG00000017125PABPC49982.764Bos_taurus
ENSDARG00000059259pabpc46083.929ENSBTAG00000048536-9383.929Bos_taurus
ENSDARG00000059259pabpc410085.855ENSCJAG00000002512-9985.079Callithrix_jacchus
ENSDARG00000059259pabpc48472.180ENSCJAG00000045953-9870.677Callithrix_jacchus
ENSDARG00000059259pabpc410085.855ENSCAFG00000003081PABPC49985.079Canis_familiaris
ENSDARG00000059259pabpc410085.855ENSCAFG00020004161PABPC49981.639Canis_lupus_dingo
ENSDARG00000059259pabpc410081.319ENSCHIG00000019398-9981.487Capra_hircus
ENSDARG00000059259pabpc49967.816ENSCHIG00000023385-9966.823Capra_hircus
ENSDARG00000059259pabpc410085.691ENSTSYG00000006532PABPC49984.921Carlito_syrichta
ENSDARG00000059259pabpc49985.620ENSCAPG00000015984PABPC49984.848Cavia_aperea
ENSDARG00000059259pabpc410086.020ENSCPOG00000009552PABPC49985.238Cavia_porcellus
ENSDARG00000059259pabpc410085.691ENSCCAG00000037306PABPC49984.921Cebus_capucinus
ENSDARG00000059259pabpc410085.691ENSCATG00000042164PABPC49984.921Cercocebus_atys
ENSDARG00000059259pabpc410085.855ENSCLAG00000011899PABPC49985.238Chinchilla_lanigera
ENSDARG00000059259pabpc410081.319ENSCSAG00000001135PABPC49981.487Chlorocebus_sabaeus
ENSDARG00000059259pabpc48589.474ENSCHOG00000005327PABPC47890.027Choloepus_hoffmanni
ENSDARG00000059259pabpc410088.651ENSCPBG00000001038PABPC49988.114Chrysemys_picta_bellii
ENSDARG00000059259pabpc49985.786ENSCANG00000034177PABPC49985.000Colobus_angolensis_palliatus
ENSDARG00000059259pabpc410084.488ENSCGRG00001018166Pabpc49883.625Cricetulus_griseus_chok1gshd
ENSDARG00000059259pabpc49984.564ENSCGRG00000009777Pabpc49883.683Cricetulus_griseus_crigri
ENSDARG00000059259pabpc410091.570ENSCSEG00000000130pabpc49891.866Cynoglossus_semilaevis
ENSDARG00000059259pabpc49992.605ENSCVAG00000019246pabpc49992.869Cyprinodon_variegatus
ENSDARG00000059259pabpc49984.701ENSDNOG00000018444-9983.871Dasypus_novemcinctus
ENSDARG00000059259pabpc410082.063ENSDORG00000011581Pabpc49982.893Dipodomys_ordii
ENSDARG00000059259pabpc410093.846ENSETEG00000018453-8393.846Echinops_telfairi
ENSDARG00000059259pabpc48555.192ENSETEG00000009172-9953.846Echinops_telfairi
ENSDARG00000059259pabpc49977.446ENSEBUG00000013782pabpc49977.157Eptatretus_burgeri
ENSDARG00000059259pabpc49977.575ENSEBUG00000000992pabpc49976.923Eptatretus_burgeri
ENSDARG00000059259pabpc410081.476ENSEASG00005014119PABPC49981.639Equus_asinus_asinus
ENSDARG00000059259pabpc410081.476ENSECAG00000009396PABPC49981.639Equus_caballus
ENSDARG00000059259pabpc410080.377ENSEEUG00000002962PABPC49979.818Erinaceus_europaeus
ENSDARG00000059259pabpc410093.399ENSELUG00000003195pabpc49893.631Esox_lucius
ENSDARG00000059259pabpc410085.855ENSFCAG00000015254-9985.079Felis_catus
ENSDARG00000059259pabpc410088.651ENSFALG00000000543PABPC49988.114Ficedula_albicollis
ENSDARG00000059259pabpc410081.476ENSFDAG00000020016-9981.335Fukomys_damarensis
ENSDARG00000059259pabpc48953.390ENSFDAG00000010581-9951.127Fukomys_damarensis
ENSDARG00000059259pabpc410092.562ENSFHEG00000007548pabpc49892.823Fundulus_heteroclitus
ENSDARG00000059259pabpc410090.744ENSGMOG00000019025pabpc49890.909Gadus_morhua
ENSDARG00000059259pabpc49988.595ENSGALG00000003800PABPC49988.057Gallus_gallus
ENSDARG00000059259pabpc49996.651ENSGAFG00000018195pabpc49897.778Gambusia_affinis
ENSDARG00000059259pabpc410090.744ENSGACG00000007179pabpc49891.242Gasterosteus_aculeatus
ENSDARG00000059259pabpc49989.073ENSGAGG00000001888PABPC49988.517Gopherus_agassizii
ENSDARG00000059259pabpc410085.691ENSGGOG00000004002PABPC49984.921Gorilla_gorilla
ENSDARG00000059259pabpc410092.562ENSHBUG00000020206pabpc49892.823Haplochromis_burtoni
ENSDARG00000059259pabpc410085.855ENSHGLG00000011162PABPC49985.079Heterocephalus_glaber_female
ENSDARG00000059259pabpc410085.855ENSHGLG00100001580PABPC49985.079Heterocephalus_glaber_male
ENSDARG00000059259pabpc410090.909ENSHCOG00000012694pabpc49892.185Hippocampus_comes
ENSDARG00000059259pabpc410094.215ENSIPUG00000016620pabpc49994.258Ictalurus_punctatus
ENSDARG00000059259pabpc410084.653ENSSTOG00000010416PABPC49984.236Ictidomys_tridecemlineatus
ENSDARG00000059259pabpc410081.774ENSJJAG00000007781Pabpc49981.182Jaculus_jaculus
ENSDARG00000059259pabpc410091.584ENSKMAG00000013597pabpc49891.720Kryptolebias_marmoratus
ENSDARG00000059259pabpc410091.254ENSLBEG00000013654pabpc49891.561Labrus_bergylta
ENSDARG00000059259pabpc49988.264ENSLACG00000011907PABPC49987.898Latimeria_chalumnae
ENSDARG00000059259pabpc410093.554ENSLOCG00000001877pabpc49993.631Lepisosteus_oculatus
ENSDARG00000059259pabpc410084.818ENSLAFG00000000151PABPC49984.395Loxodonta_africana
ENSDARG00000059259pabpc410085.691ENSMFAG00000041481PABPC49984.921Macaca_fascicularis
ENSDARG00000059259pabpc410081.319ENSMMUG00000007497PABPC49981.487Macaca_mulatta
ENSDARG00000059259pabpc410085.691ENSMNEG00000043054PABPC49984.921Macaca_nemestrina
ENSDARG00000059259pabpc410085.691ENSMLEG00000040716PABPC49984.921Mandrillus_leucophaeus
ENSDARG00000059259pabpc410092.893ENSMAMG00000010025pabpc49893.142Mastacembelus_armatus
ENSDARG00000059259pabpc410092.562ENSMZEG00005006141pabpc49892.823Maylandia_zebra
ENSDARG00000059259pabpc49984.071ENSMGAG00000005408PABPC49983.986Meleagris_gallopavo
ENSDARG00000059259pabpc46082.036ENSMAUG00000004089-9280.117Mesocricetus_auratus
ENSDARG00000059259pabpc47692.105ENSMAUG00000019763-8289.899Mesocricetus_auratus
ENSDARG00000059259pabpc47580.476ENSMAUG00000001295-9779.524Mesocricetus_auratus
ENSDARG00000059259pabpc49974.692ENSMICG00000036729-9973.703Microcebus_murinus
ENSDARG00000059259pabpc49384.220ENSMICG00000016633-10083.746Microcebus_murinus
ENSDARG00000059259pabpc410085.691ENSMOCG00000006763Pabpc49884.786Microtus_ochrogaster
ENSDARG00000059259pabpc410088.926ENSMMOG00000002363pabpc49888.712Mola_mola
ENSDARG00000059259pabpc410083.438ENSMODG00000017657-9982.801Monodelphis_domestica
ENSDARG00000059259pabpc46271.200ENSMODG00000018051-9671.200Monodelphis_domestica
ENSDARG00000059259pabpc410092.422ENSMALG00000011017pabpc49892.687Monopterus_albus
ENSDARG00000059259pabpc49871.739MGP_CAROLIEiJ_G0024864-9972.359Mus_caroli
ENSDARG00000059259pabpc49981.073MGP_CAROLIEiJ_G0026435-10097.163Mus_caroli
ENSDARG00000059259pabpc410085.691ENSMUSG00000011257Pabpc410095.858Mus_musculus
ENSDARG00000059259pabpc49981.340MGP_PahariEiJ_G0028765Pabpc410097.872Mus_pahari
ENSDARG00000059259pabpc49970.588MGP_SPRETEiJ_G0027415Pabpc410097.872Mus_spretus
ENSDARG00000059259pabpc410081.476ENSMPUG00000014414-9981.639Mustela_putorius_furo
ENSDARG00000059259pabpc49846.500ENSMPUG00000006836-10045.484Mustela_putorius_furo
ENSDARG00000059259pabpc410084.653ENSMLUG00000012068PABPC49984.102Myotis_lucifugus
ENSDARG00000059259pabpc410084.818ENSNGAG00000018292Pabpc49984.395Nannospalax_galili
ENSDARG00000059259pabpc46897.590ENSNBRG00000010047-7297.590Neolamprologus_brichardi
ENSDARG00000059259pabpc46297.596ENSNBRG00000009708pabpc49897.596Neolamprologus_brichardi
ENSDARG00000059259pabpc410085.691ENSNLEG00000011928PABPC49984.921Nomascus_leucogenys
ENSDARG00000059259pabpc48890.476ENSOPRG00000011984PABPC48690.476Ochotona_princeps
ENSDARG00000059259pabpc410085.156ENSODEG00000006592-9984.921Octodon_degus
ENSDARG00000059259pabpc49975.111ENSODEG00000017434-9974.841Octodon_degus
ENSDARG00000059259pabpc45583.571ENSODEG00000013457-10083.571Octodon_degus
ENSDARG00000059259pabpc410092.727ENSONIG00000008176pabpc49892.982Oreochromis_niloticus
ENSDARG00000059259pabpc49987.624ENSOANG00000010001PABPC49987.122Ornithorhynchus_anatinus
ENSDARG00000059259pabpc410081.162ENSOCUG00000000562PABPC48881.348Oryctolagus_cuniculus
ENSDARG00000059259pabpc410095.385ENSORLG00000017479pabpc49795.385Oryzias_latipes
ENSDARG00000059259pabpc410095.385ENSORLG00020018644pabpc49795.385Oryzias_latipes_hni
ENSDARG00000059259pabpc410095.385ENSORLG00015015042pabpc49795.385Oryzias_latipes_hsok
ENSDARG00000059259pabpc410091.570ENSOMEG00000014410pabpc49891.853Oryzias_melastigma
ENSDARG00000059259pabpc410082.080ENSOGAG00000004067PABPC49981.623Otolemur_garnettii
ENSDARG00000059259pabpc410081.319ENSOARG00000020060PABPC49981.487Ovis_aries
ENSDARG00000059259pabpc410085.691ENSPPAG00000043625PABPC49984.921Pan_paniscus
ENSDARG00000059259pabpc410085.855ENSPPRG00000024727PABPC49985.079Panthera_pardus
ENSDARG00000059259pabpc410085.855ENSPTIG00000005829PABPC49985.079Panthera_tigris_altaica
ENSDARG00000059259pabpc410085.691ENSPTRG00000000573PABPC49984.921Pan_troglodytes
ENSDARG00000059259pabpc410085.691ENSPANG00000009484PABPC49984.921Papio_anubis
ENSDARG00000059259pabpc410093.554ENSPKIG00000025356pabpc49992.951Paramormyrops_kingsleyae
ENSDARG00000059259pabpc410088.816ENSPSIG00000016892PABPC49988.273Pelodiscus_sinensis
ENSDARG00000059259pabpc410088.264ENSPMGG00000009073pabpc49888.038Periophthalmus_magnuspinnatus
ENSDARG00000059259pabpc410079.133ENSPEMG00000024193-9980.282Peromyscus_maniculatus_bairdii
ENSDARG00000059259pabpc410085.526ENSPEMG00000023569-9984.628Peromyscus_maniculatus_bairdii
ENSDARG00000059259pabpc49275.965ENSPMAG00000002836pabpc49976.842Petromyzon_marinus
ENSDARG00000059259pabpc49971.368ENSPMAG00000007885pabpc49971.486Petromyzon_marinus
ENSDARG00000059259pabpc49993.824ENSPCIG00000020674PABPC49994.417Phascolarctos_cinereus
ENSDARG00000059259pabpc410091.736ENSPFOG00000002682pabpc49892.026Poecilia_formosa
ENSDARG00000059259pabpc410091.736ENSPLAG00000010112pabpc49892.026Poecilia_latipinna
ENSDARG00000059259pabpc410091.901ENSPMEG00000019739pabpc49892.185Poecilia_mexicana
ENSDARG00000059259pabpc410092.066ENSPREG00000001589pabpc49892.344Poecilia_reticulata
ENSDARG00000059259pabpc410081.319ENSPPYG00000001506PABPC49981.487Pongo_abelii
ENSDARG00000059259pabpc410076.452ENSPCAG00000003341PABPC49976.783Procavia_capensis
ENSDARG00000059259pabpc410084.893ENSPCOG00000023725-9984.786Propithecus_coquereli
ENSDARG00000059259pabpc48486.111ENSPCOG00000025882-9585.106Propithecus_coquereli
ENSDARG00000059259pabpc49880.911ENSPVAG00000002187PABPC49980.270Pteropus_vampyrus
ENSDARG00000059259pabpc410092.727ENSPNYG00000006134pabpc49892.982Pundamilia_nyererei
ENSDARG00000059259pabpc410095.537ENSPNAG00000024355pabpc49995.701Pygocentrus_nattereri
ENSDARG00000059259pabpc410081.746ENSRNOG00000015642Pabpc49982.298Rattus_norvegicus
ENSDARG00000059259pabpc410079.524ENSRNOG00000028592AABR07035074.19980.124Rattus_norvegicus
ENSDARG00000059259pabpc410085.691ENSRBIG00000039761PABPC49984.921Rhinopithecus_bieti
ENSDARG00000059259pabpc410085.691ENSRROG00000033355PABPC49984.921Rhinopithecus_roxellana
ENSDARG00000059259pabpc410085.691ENSSBOG00000026193PABPC49984.921Saimiri_boliviensis_boliviensis
ENSDARG00000059259pabpc410086.678ENSSHAG00000018139PABPC49985.895Sarcophilus_harrisii
ENSDARG00000059259pabpc49992.573ENSSFOG00015023514pabpc49892.857Scleropages_formosus
ENSDARG00000059259pabpc410092.066ENSSMAG00000009007pabpc49892.332Scophthalmus_maximus
ENSDARG00000059259pabpc410092.397ENSSDUG00000012683pabpc49892.663Seriola_dumerili
ENSDARG00000059259pabpc410092.397ENSSLDG00000013025pabpc49892.663Seriola_lalandi_dorsalis
ENSDARG00000059259pabpc410074.439ENSSARG00000000310PABPC49974.810Sorex_araneus
ENSDARG00000059259pabpc410087.624ENSSPUG00000003204PABPC49987.122Sphenodon_punctatus
ENSDARG00000059259pabpc410092.893ENSSPAG00000009252pabpc49893.142Stegastes_partitus
ENSDARG00000059259pabpc410085.855ENSSSCG00000003660-9985.079Sus_scrofa
ENSDARG00000059259pabpc48943.860ENSSSCG00000036170-9444.207Sus_scrofa
ENSDARG00000059259pabpc410083.255ENSTGUG00000001266PABPC49983.384Taeniopygia_guttata
ENSDARG00000059259pabpc410091.405ENSTRUG00000005907pabpc49891.547Takifugu_rubripes
ENSDARG00000059259pabpc410084.793ENSTNIG00000016902pabpc49884.848Tetraodon_nigroviridis
ENSDARG00000059259pabpc49969.802ENSTBEG00000009035PABPC49969.983Tupaia_belangeri
ENSDARG00000059259pabpc49963.774ENSTTRG00000014340PABPC49969.646Tursiops_truncatus
ENSDARG00000059259pabpc410085.691ENSUAMG00000000303PABPC49984.921Ursus_americanus
ENSDARG00000059259pabpc410090.045ENSUMAG00000019585PABPC49991.579Ursus_maritimus
ENSDARG00000059259pabpc47670.882ENSVPAG00000010041PABPC47370.882Vicugna_pacos
ENSDARG00000059259pabpc410085.855ENSVVUG00000005215PABPC49985.079Vulpes_vulpes
ENSDARG00000059259pabpc46998.171ENSXETG00000027221-9898.171Xenopus_tropicalis
ENSDARG00000059259pabpc49983.416ENSXETG00000010946pabpc49983.067Xenopus_tropicalis
ENSDARG00000059259pabpc49996.306ENSXCOG00000013190pabpc49695.755Xiphophorus_couchianus
ENSDARG00000059259pabpc410091.901ENSXMAG00000019007pabpc49892.185Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm-IEAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0008143poly(A) binding21873635.IBAFunction
GO:0008266poly(U) RNA binding21873635.IBAFunction
GO:0010494cytoplasmic stress granule21873635.IBAComponent
GO:1990904ribonucleoprotein complex21873635.IBAComponent

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us