EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000059398 (Gene tree)
Gene ID: 641483
Gene Symbol: myef2
Alias: zgc:123351|zgc:152722
Full Name: myelin expression factor 2
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 15051 bases
Position: chr18:5233354-5248404
Accession: ZDB-GENE-051120-114
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000076939	RRM_1	PF00076.22	6.4e-54	1	3
ENSDARP00000076939	RRM_1	PF00076.22	6.4e-54	2	3
ENSDARP00000076939	RRM_1	PF00076.22	6.4e-54	3	3
ENSDARP00000076941	RRM_1	PF00076.22	6.6e-54	1	3
ENSDARP00000076941	RRM_1	PF00076.22	6.6e-54	2	3
ENSDARP00000076941	RRM_1	PF00076.22	6.6e-54	3	3
ENSDARP00000088733	RRM_1	PF00076.22	1.1e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000129299	-	640	-	-	- (aa)	-	-
ENSDART00000082504	-	1917	-	ENSDARP00000076939	553 (aa)	-	B0V3S8
ENSDART00000142036	-	769	-	-	- (aa)	-	-
ENSDART00000082506	-	1674	-	ENSDARP00000076941	557 (aa)	-	F1QRQ0
ENSDART00000143751	-	783	-	-	- (aa)	-	-
ENSDART00000097960	-	1241	-	ENSDARP00000088733	327 (aa)	-	B0V3S9

Gene Model

Click here to download ENSDARG00000059398's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000059398's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000059398	myef2	93	51.634	ENSDARG00000061735	hnrnpm	99	58.759

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000059398	myef2	96	65.062	ENSG00000104177	MYEF2	99	66.929	Homo_sapiens
ENSDARG00000059398	myef2	99	69.512	ENSAPOG00000015050	myef2	100	73.137	Acanthochromis_polyacanthus
ENSDARG00000059398	myef2	95	65.493	ENSAMEG00000001964	MYEF2	100	63.894	Ailuropoda_melanoleuca
ENSDARG00000059398	myef2	100	68.547	ENSACIG00000020446	myef2	100	69.844	Amphilophus_citrinellus
ENSDARG00000059398	myef2	99	69.217	ENSAOCG00000017431	myef2	100	72.837	Amphiprion_ocellaris
ENSDARG00000059398	myef2	99	69.391	ENSAPEG00000024834	myef2	100	73.010	Amphiprion_percula
ENSDARG00000059398	myef2	95	72.628	ENSATEG00000017892	myef2	100	72.539	Anabas_testudineus
ENSDARG00000059398	myef2	93	65.062	ENSAPLG00000008935	MYEF2	99	65.233	Anas_platyrhynchos
ENSDARG00000059398	myef2	94	60.631	ENSACAG00000004806	MYEF2	95	60.762	Anolis_carolinensis
ENSDARG00000059398	myef2	100	62.542	ENSANAG00000036558	MYEF2	100	63.087	Aotus_nancymaae
ENSDARG00000059398	myef2	92	70.328	ENSACLG00000017421	myef2	98	71.233	Astatotilapia_calliptera
ENSDARG00000059398	myef2	100	75.130	ENSAMXG00000038244	myef2	100	76.696	Astyanax_mexicanus
ENSDARG00000059398	myef2	96	65.771	ENSBTAG00000008771	MYEF2	94	65.827	Bos_taurus
ENSDARG00000059398	myef2	98	63.811	ENSCJAG00000001875	MYEF2	100	62.521	Callithrix_jacchus
ENSDARG00000059398	myef2	93	63.894	ENSCAFG00000014008	MYEF2	99	64.486	Canis_familiaris
ENSDARG00000059398	myef2	74	56.410	ENSCAFG00020022004	-	97	51.894	Canis_lupus_dingo
ENSDARG00000059398	myef2	96	63.016	ENSCHIG00000022164	MYEF2	99	61.706	Capra_hircus
ENSDARG00000059398	myef2	96	65.771	ENSTSYG00000010575	MYEF2	99	64.493	Carlito_syrichta
ENSDARG00000059398	myef2	93	59.571	ENSCAPG00000017762	MYEF2	99	60.926	Cavia_aperea
ENSDARG00000059398	myef2	100	55.537	ENSCPOG00000010584	MYEF2	100	56.314	Cavia_porcellus
ENSDARG00000059398	myef2	100	62.542	ENSCCAG00000033878	MYEF2	99	65.761	Cebus_capucinus
ENSDARG00000059398	myef2	96	64.875	ENSCATG00000039268	MYEF2	99	65.336	Cercocebus_atys
ENSDARG00000059398	myef2	100	61.716	ENSCLAG00000008328	MYEF2	100	61.296	Chinchilla_lanigera
ENSDARG00000059398	myef2	96	63.826	ENSCSAG00000010366	MYEF2	100	61.211	Chlorocebus_sabaeus
ENSDARG00000059398	myef2	56	85.714	ENSCHOG00000011348	-	51	85.714	Choloepus_hoffmanni
ENSDARG00000059398	myef2	93	65.636	ENSCPBG00000024789	MYEF2	97	64.322	Chrysemys_picta_bellii
ENSDARG00000059398	myef2	96	65.054	ENSCANG00000022275	MYEF2	99	65.517	Colobus_angolensis_palliatus
ENSDARG00000059398	myef2	99	63.574	ENSCGRG00001024080	-	99	62.931	Cricetulus_griseus_chok1gshd
ENSDARG00000059398	myef2	93	67.100	ENSCGRG00000012257	-	99	66.418	Cricetulus_griseus_crigri
ENSDARG00000059398	myef2	99	66.490	ENSCSEG00000005597	myef2	95	65.849	Cynoglossus_semilaevis
ENSDARG00000059398	myef2	100	49.544	ENSCVAG00000010801	myef2	100	53.012	Cyprinodon_variegatus
ENSDARG00000059398	myef2	97	65.071	ENSDNOG00000038711	MYEF2	94	64.875	Dasypus_novemcinctus
ENSDARG00000059398	myef2	92	64.663	ENSDORG00000015835	-	99	64.534	Dipodomys_ordii
ENSDARG00000059398	myef2	88	54.875	ENSETEG00000005360	MYEF2	100	55.093	Echinops_telfairi
ENSDARG00000059398	myef2	68	57.190	ENSEBUG00000016563	myef2	91	50.788	Eptatretus_burgeri
ENSDARG00000059398	myef2	90	64.751	ENSEASG00005017818	MYEF2	100	60.169	Equus_asinus_asinus
ENSDARG00000059398	myef2	90	65.863	ENSECAG00000034546	-	100	61.614	Equus_caballus
ENSDARG00000059398	myef2	90	66.922	ENSECAG00000005741	MYEF2	100	62.606	Equus_caballus
ENSDARG00000059398	myef2	65	96.970	ENSEEUG00000006405	MYEF2	59	96.970	Erinaceus_europaeus
ENSDARG00000059398	myef2	97	68.402	ENSELUG00000003712	myef2	89	70.918	Esox_lucius
ENSDARG00000059398	myef2	93	67.844	ENSFCAG00000027198	MYEF2	100	63.514	Felis_catus
ENSDARG00000059398	myef2	93	64.937	ENSFALG00000011565	MYEF2	99	64.388	Ficedula_albicollis
ENSDARG00000059398	myef2	93	65.328	ENSFDAG00000007098	MYEF2	99	66.355	Fukomys_damarensis
ENSDARG00000059398	myef2	98	70.945	ENSFHEG00000002386	myef2	100	71.181	Fundulus_heteroclitus
ENSDARG00000059398	myef2	92	65.693	ENSGMOG00000008489	myef2	99	67.029	Gadus_morhua
ENSDARG00000059398	myef2	93	65.350	ENSGALG00000032546	MYEF2	97	60.855	Gallus_gallus
ENSDARG00000059398	myef2	100	69.352	ENSGAFG00000005838	myef2	100	70.681	Gambusia_affinis
ENSDARG00000059398	myef2	92	74.905	ENSGACG00000016759	myef2	100	74.763	Gasterosteus_aculeatus
ENSDARG00000059398	myef2	97	60.943	ENSGAGG00000015265	MYEF2	97	60.892	Gopherus_agassizii
ENSDARG00000059398	myef2	96	65.054	ENSGGOG00000014968	MYEF2	99	64.428	Gorilla_gorilla
ENSDARG00000059398	myef2	99	69.231	ENSHBUG00000015847	myef2	100	71.057	Haplochromis_burtoni
ENSDARG00000059398	myef2	100	61.745	ENSHGLG00000018166	MYEF2	100	62.457	Heterocephalus_glaber_female
ENSDARG00000059398	myef2	92	64.835	ENSHGLG00100014102	MYEF2	99	63.838	Heterocephalus_glaber_male
ENSDARG00000059398	myef2	97	69.767	ENSHCOG00000001652	myef2	98	71.786	Hippocampus_comes
ENSDARG00000059398	myef2	98	70.705	ENSIPUG00000018589	myef2	98	69.565	Ictalurus_punctatus
ENSDARG00000059398	myef2	93	67.286	ENSSTOG00000007740	MYEF2	99	67.351	Ictidomys_tridecemlineatus
ENSDARG00000059398	myef2	92	64.973	ENSJJAG00000015428	-	100	63.570	Jaculus_jaculus
ENSDARG00000059398	myef2	98	70.390	ENSKMAG00000002383	myef2	99	75.579	Kryptolebias_marmoratus
ENSDARG00000059398	myef2	94	73.358	ENSLBEG00000005649	myef2	100	72.887	Labrus_bergylta
ENSDARG00000059398	myef2	53	78.738	ENSLACG00000006382	MYEF2	100	64.975	Latimeria_chalumnae
ENSDARG00000059398	myef2	100	70.294	ENSLOCG00000013241	myef2	100	75.820	Lepisosteus_oculatus
ENSDARG00000059398	myef2	100	61.275	ENSLAFG00000012990	MYEF2	100	61.375	Loxodonta_africana
ENSDARG00000059398	myef2	96	64.875	ENSMFAG00000046361	MYEF2	99	65.336	Macaca_fascicularis
ENSDARG00000059398	myef2	96	64.174	ENSMMUG00000018834	MYEF2	99	63.110	Macaca_mulatta
ENSDARG00000059398	myef2	96	64.875	ENSMNEG00000028845	MYEF2	100	61.937	Macaca_nemestrina
ENSDARG00000059398	myef2	96	64.875	ENSMLEG00000038724	MYEF2	99	65.336	Mandrillus_leucophaeus
ENSDARG00000059398	myef2	94	72.932	ENSMAMG00000011476	myef2	99	72.615	Mastacembelus_armatus
ENSDARG00000059398	myef2	99	68.804	ENSMZEG00005011832	myef2	100	71.231	Maylandia_zebra
ENSDARG00000059398	myef2	93	64.991	ENSMGAG00000006915	MYEF2	99	64.505	Meleagris_gallopavo
ENSDARG00000059398	myef2	99	63.746	ENSMAUG00000019642	-	99	63.103	Mesocricetus_auratus
ENSDARG00000059398	myef2	93	66.729	ENSMICG00000014513	MYEF2	99	65.399	Microcebus_murinus
ENSDARG00000059398	myef2	96	65.412	ENSMOCG00000006917	-	95	64.811	Microtus_ochrogaster
ENSDARG00000059398	myef2	68	58.182	ENSMOCG00000021295	-	100	54.709	Microtus_ochrogaster
ENSDARG00000059398	myef2	100	64.362	ENSMMOG00000021557	myef2	100	65.194	Mola_mola
ENSDARG00000059398	myef2	95	58.524	ENSMODG00000002744	MYEF2	79	58.722	Monodelphis_domestica
ENSDARG00000059398	myef2	94	65.784	ENSMALG00000012193	myef2	98	66.229	Monopterus_albus
ENSDARG00000059398	myef2	97	64.464	MGP_CAROLIEiJ_G0024222	Myef2	99	62.976	Mus_caroli
ENSDARG00000059398	myef2	97	64.464	ENSMUSG00000027201	Myef2	99	62.976	Mus_musculus
ENSDARG00000059398	myef2	96	57.058	ENSMUSG00000049230	Gm9833	92	57.510	Mus_musculus
ENSDARG00000059398	myef2	68	58.228	MGP_PahariEiJ_G0025668	-	82	54.286	Mus_pahari
ENSDARG00000059398	myef2	97	64.464	MGP_PahariEiJ_G0025667	Myef2	99	62.976	Mus_pahari
ENSDARG00000059398	myef2	97	64.464	MGP_SPRETEiJ_G0025141	Myef2	99	62.976	Mus_spretus
ENSDARG00000059398	myef2	62	63.004	MGP_SPRETEiJ_G0025142	-	83	63.004	Mus_spretus
ENSDARG00000059398	myef2	93	63.043	ENSMPUG00000011254	MYEF2	99	61.749	Mustela_putorius_furo
ENSDARG00000059398	myef2	90	60.374	ENSMLUG00000006781	MYEF2	99	59.076	Myotis_lucifugus
ENSDARG00000059398	myef2	96	64.533	ENSNGAG00000010756	-	97	65.179	Nannospalax_galili
ENSDARG00000059398	myef2	92	69.942	ENSNBRG00000023602	myef2	98	72.398	Neolamprologus_brichardi
ENSDARG00000059398	myef2	93	66.543	ENSNLEG00000005951	MYEF2	99	64.428	Nomascus_leucogenys
ENSDARG00000059398	myef2	67	75.697	ENSMEUG00000015210	-	56	75.697	Notamacropus_eugenii
ENSDARG00000059398	myef2	85	88.679	ENSOPRG00000003919	MYEF2	81	88.679	Ochotona_princeps
ENSDARG00000059398	myef2	100	61.224	ENSODEG00000007463	MYEF2	100	62.457	Octodon_degus
ENSDARG00000059398	myef2	99	65.354	ENSONIG00000013374	myef2	99	65.103	Oreochromis_niloticus
ENSDARG00000059398	myef2	93	59.127	ENSOANG00000007375	MYEF2	99	59.639	Ornithorhynchus_anatinus
ENSDARG00000059398	myef2	93	66.126	ENSOCUG00000013043	MYEF2	94	64.049	Oryctolagus_cuniculus
ENSDARG00000059398	myef2	99	70.783	ENSORLG00000002730	myef2	100	72.049	Oryzias_latipes
ENSDARG00000059398	myef2	99	70.783	ENSORLG00020021524	myef2	100	72.049	Oryzias_latipes_hni
ENSDARG00000059398	myef2	98	71.201	ENSORLG00015020877	myef2	99	71.652	Oryzias_latipes_hsok
ENSDARG00000059398	myef2	99	66.197	ENSOMEG00000010072	myef2	100	67.193	Oryzias_melastigma
ENSDARG00000059398	myef2	96	64.187	ENSOGAG00000010907	MYEF2	94	64.000	Otolemur_garnettii
ENSDARG00000059398	myef2	90	67.037	ENSOARG00000021027	MYEF2	99	65.217	Ovis_aries
ENSDARG00000059398	myef2	98	63.186	ENSPPAG00000041556	MYEF2	100	63.523	Pan_paniscus
ENSDARG00000059398	myef2	93	67.844	ENSPPRG00000011446	MYEF2	100	63.514	Panthera_pardus
ENSDARG00000059398	myef2	93	67.844	ENSPTIG00000018122	MYEF2	99	63.934	Panthera_tigris_altaica
ENSDARG00000059398	myef2	96	65.054	ENSPTRG00000007042	MYEF2	99	64.428	Pan_troglodytes
ENSDARG00000059398	myef2	96	64.875	ENSPANG00000017757	MYEF2	100	61.937	Papio_anubis
ENSDARG00000059398	myef2	100	63.251	ENSPKIG00000018344	MYEF2	95	66.174	Paramormyrops_kingsleyae
ENSDARG00000059398	myef2	94	60.897	ENSPKIG00000020643	myef2	91	64.935	Paramormyrops_kingsleyae
ENSDARG00000059398	myef2	93	66.964	ENSPSIG00000016637	MYEF2	97	66.905	Pelodiscus_sinensis
ENSDARG00000059398	myef2	84	81.667	ENSPMGG00000001513	myef2	89	81.667	Periophthalmus_magnuspinnatus
ENSDARG00000059398	myef2	92	64.065	ENSPEMG00000006286	-	99	62.069	Peromyscus_maniculatus_bairdii
ENSDARG00000059398	myef2	80	72.527	ENSPMAG00000001364	myef2	55	77.215	Petromyzon_marinus
ENSDARG00000059398	myef2	93	66.365	ENSPCIG00000022902	MYEF2	95	63.527	Phascolarctos_cinereus
ENSDARG00000059398	myef2	100	66.227	ENSPFOG00000001754	myef2	99	67.051	Poecilia_formosa
ENSDARG00000059398	myef2	98	70.463	ENSPLAG00000001538	myef2	100	71.130	Poecilia_latipinna
ENSDARG00000059398	myef2	92	72.128	ENSPLAG00000001814	MYEF2	96	73.954	Poecilia_latipinna
ENSDARG00000059398	myef2	100	69.634	ENSPMEG00000014953	MYEF2	100	71.130	Poecilia_mexicana
ENSDARG00000059398	myef2	100	69.634	ENSPMEG00000014250	myef2	100	71.130	Poecilia_mexicana
ENSDARG00000059398	myef2	100	69.136	ENSPREG00000010801	myef2	99	69.527	Poecilia_reticulata
ENSDARG00000059398	myef2	96	64.348	ENSPPYG00000006452	MYEF2	100	61.702	Pongo_abelii
ENSDARG00000059398	myef2	97	63.122	ENSPCAG00000016660	MYEF2	96	63.465	Procavia_capensis
ENSDARG00000059398	myef2	93	66.729	ENSPCOG00000024570	MYEF2	99	65.399	Propithecus_coquereli
ENSDARG00000059398	myef2	98	60.075	ENSPVAG00000004102	MYEF2	96	60.902	Pteropus_vampyrus
ENSDARG00000059398	myef2	92	71.456	ENSPNYG00000010879	myef2	98	71.560	Pundamilia_nyererei
ENSDARG00000059398	myef2	89	93.103	ENSPNAG00000026387	myef2	98	90.000	Pygocentrus_nattereri
ENSDARG00000059398	myef2	96	64.098	ENSRNOG00000005258	Myef2	99	60.637	Rattus_norvegicus
ENSDARG00000059398	myef2	96	65.054	ENSRBIG00000037503	MYEF2	99	65.517	Rhinopithecus_bieti
ENSDARG00000059398	myef2	96	65.054	ENSRROG00000042861	MYEF2	99	65.517	Rhinopithecus_roxellana
ENSDARG00000059398	myef2	93	66.729	ENSSBOG00000029634	MYEF2	99	67.351	Saimiri_boliviensis_boliviensis
ENSDARG00000059398	myef2	93	66.245	ENSSHAG00000011695	MYEF2	99	65.761	Sarcophilus_harrisii
ENSDARG00000059398	myef2	98	59.820	ENSSFOG00015017915	myef2	99	58.919	Scleropages_formosus
ENSDARG00000059398	myef2	94	70.019	ENSSFOG00015012981	myef2	100	68.126	Scleropages_formosus
ENSDARG00000059398	myef2	96	68.440	ENSSMAG00000021279	myef2	99	73.665	Scophthalmus_maximus
ENSDARG00000059398	myef2	99	70.486	ENSSDUG00000015983	myef2	100	72.790	Seriola_dumerili
ENSDARG00000059398	myef2	62	69.697	ENSSLDG00000021862	myef2	94	69.340	Seriola_lalandi_dorsalis
ENSDARG00000059398	myef2	87	66.119	ENSSARG00000003264	MYEF2	100	66.116	Sorex_araneus
ENSDARG00000059398	myef2	92	62.234	ENSSPUG00000011966	MYEF2	98	61.261	Sphenodon_punctatus
ENSDARG00000059398	myef2	99	71.107	ENSSPAG00000021514	myef2	100	71.799	Stegastes_partitus
ENSDARG00000059398	myef2	89	81.667	ENSSSCG00000004661	MYEF2	82	84.483	Sus_scrofa
ENSDARG00000059398	myef2	93	65.054	ENSTGUG00000007130	MYEF2	99	63.964	Taeniopygia_guttata
ENSDARG00000059398	myef2	92	72.394	ENSTRUG00000016967	myef2	97	71.845	Takifugu_rubripes
ENSDARG00000059398	myef2	98	71.583	ENSTNIG00000009526	myef2	100	72.663	Tetraodon_nigroviridis
ENSDARG00000059398	myef2	71	58.333	ENSTBEG00000002187	MYEF2	66	66.187	Tupaia_belangeri
ENSDARG00000059398	myef2	96	65.217	ENSTTRG00000008076	MYEF2	95	65.210	Tursiops_truncatus
ENSDARG00000059398	myef2	93	63.818	ENSUAMG00000020099	MYEF2	96	60.000	Ursus_americanus
ENSDARG00000059398	myef2	93	66.231	ENSUMAG00000009804	MYEF2	99	64.844	Ursus_maritimus
ENSDARG00000059398	myef2	90	67.037	ENSVPAG00000004721	MYEF2	99	65.217	Vicugna_pacos
ENSDARG00000059398	myef2	97	62.970	ENSVVUG00000014591	MYEF2	100	60.386	Vulpes_vulpes
ENSDARG00000059398	myef2	99	59.774	ENSXETG00000018412	myef2	100	59.612	Xenopus_tropicalis
ENSDARG00000059398	myef2	100	69.894	ENSXMAG00000016686	myef2	100	70.087	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	-	IEA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0060216	definitive hemopoiesis	22801375.	IMP	Process
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:2000815	regulation of mRNA stability involved in response to oxidative stress	21873635.	IBA	Process