EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000059634 (Gene tree)
Gene ID: 561938
Gene Symbol: thumpd3
Alias: cb255|sb:cb255|zgc:163086
Full Name: THUMP domain containing 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 29817 bases
Position: chr6:21992820-22022636
Accession: ZDB-GENE-030131-9745
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000077505	THUMP	PF02926.17	4.1e-10	1	1
ENSDARP00000115829	THUMP	PF02926.17	4.2e-10	1	1
ENSDARP00000137475	THUMP	PF02926.17	4.2e-10	1	1
ENSDARP00000077505	UPF0020	PF01170.18	3.3e-42	1	1
ENSDARP00000115829	UPF0020	PF01170.18	3.3e-42	1	1
ENSDARP00000137475	UPF0020	PF01170.18	3.3e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000160750	-	1619	-	ENSDARP00000137475	482 (aa)	-	E9QJ61
ENSDART00000147507	-	2258	-	ENSDARP00000115829	482 (aa)	-	E9QJ61
ENSDART00000083070	-	1619	XM_017356502	ENSDARP00000077505	477 (aa)	XP_017211991	F1QH23

Gene Model

Click here to download ENSDARG00000059634's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000059634's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000059634	thumpd3	96	60.981	ENSG00000134077	THUMPD3	92	61.638	Homo_sapiens
ENSDARG00000059634	thumpd3	96	67.686	ENSAPOG00000015836	thumpd3	93	68.043	Acanthochromis_polyacanthus
ENSDARG00000059634	thumpd3	95	60.385	ENSAMEG00000011321	THUMPD3	92	60.814	Ailuropoda_melanoleuca
ENSDARG00000059634	thumpd3	98	65.828	ENSACIG00000020096	thumpd3	93	66.102	Amphilophus_citrinellus
ENSDARG00000059634	thumpd3	99	65.957	ENSAOCG00000004399	thumpd3	93	66.245	Amphiprion_ocellaris
ENSDARG00000059634	thumpd3	99	67.368	ENSAPEG00000016740	thumpd3	93	67.368	Amphiprion_percula
ENSDARG00000059634	thumpd3	99	67.872	ENSATEG00000005345	thumpd3	94	67.872	Anabas_testudineus
ENSDARG00000059634	thumpd3	81	60.553	ENSAPLG00000003598	THUMPD3	99	62.000	Anas_platyrhynchos
ENSDARG00000059634	thumpd3	92	58.178	ENSACAG00000014974	THUMPD3	91	59.129	Anolis_carolinensis
ENSDARG00000059634	thumpd3	95	61.638	ENSANAG00000002365	THUMPD3	94	60.593	Aotus_nancymaae
ENSDARG00000059634	thumpd3	99	67.021	ENSACLG00000023333	thumpd3	93	67.021	Astatotilapia_calliptera
ENSDARG00000059634	thumpd3	65	71.605	ENSACLG00000013504	-	72	71.605	Astatotilapia_calliptera
ENSDARG00000059634	thumpd3	98	70.021	ENSAMXG00000015683	thumpd3	99	68.182	Astyanax_mexicanus
ENSDARG00000059634	thumpd3	95	62.284	ENSBTAG00000003112	THUMPD3	92	62.284	Bos_taurus
ENSDARG00000059634	thumpd3	90	34.793	WBGene00010846	M04B2.2	96	34.793	Caenorhabditis_elegans
ENSDARG00000059634	thumpd3	95	60.991	ENSCJAG00000015949	THUMPD3	92	60.991	Callithrix_jacchus
ENSDARG00000059634	thumpd3	95	61.075	ENSCAFG00000005499	THUMPD3	92	62.256	Canis_familiaris
ENSDARG00000059634	thumpd3	78	60.519	ENSCAFG00000008060	-	93	61.942	Canis_familiaris
ENSDARG00000059634	thumpd3	95	61.075	ENSCAFG00020008895	-	92	62.256	Canis_lupus_dingo
ENSDARG00000059634	thumpd3	85	60.382	ENSCAFG00020025887	-	96	61.687	Canis_lupus_dingo
ENSDARG00000059634	thumpd3	95	61.905	ENSCHIG00000024037	THUMPD3	92	61.325	Capra_hircus
ENSDARG00000059634	thumpd3	96	58.038	ENSTSYG00000000159	THUMPD3	93	59.787	Carlito_syrichta
ENSDARG00000059634	thumpd3	88	38.673	ENSCAPG00000017486	THUMPD3	83	40.802	Cavia_aperea
ENSDARG00000059634	thumpd3	94	61.050	ENSCPOG00000033287	THUMPD3	90	61.050	Cavia_porcellus
ENSDARG00000059634	thumpd3	96	58.787	ENSCCAG00000027067	-	94	60.381	Cebus_capucinus
ENSDARG00000059634	thumpd3	96	52.731	ENSCCAG00000021429	-	94	54.255	Cebus_capucinus
ENSDARG00000059634	thumpd3	96	60.768	ENSCATG00000040999	THUMPD3	94	60.381	Cercocebus_atys
ENSDARG00000059634	thumpd3	94	61.488	ENSCLAG00000000690	THUMPD3	90	61.488	Chinchilla_lanigera
ENSDARG00000059634	thumpd3	96	60.554	ENSCSAG00000010753	THUMPD3	94	60.169	Chlorocebus_sabaeus
ENSDARG00000059634	thumpd3	81	49.237	ENSCHOG00000012851	THUMPD3	75	50.000	Choloepus_hoffmanni
ENSDARG00000059634	thumpd3	92	60.776	ENSCPBG00000014771	THUMPD3	91	61.555	Chrysemys_picta_bellii
ENSDARG00000059634	thumpd3	93	40.950	ENSCSAVG00000008668	-	96	40.724	Ciona_savignyi
ENSDARG00000059634	thumpd3	96	60.341	ENSCANG00000031901	THUMPD3	94	59.958	Colobus_angolensis_palliatus
ENSDARG00000059634	thumpd3	95	60.768	ENSCGRG00001024117	Thumpd3	92	61.620	Cricetulus_griseus_chok1gshd
ENSDARG00000059634	thumpd3	95	60.768	ENSCGRG00000018116	Thumpd3	92	61.620	Cricetulus_griseus_crigri
ENSDARG00000059634	thumpd3	98	66.239	ENSCSEG00000002546	thumpd3	95	65.812	Cynoglossus_semilaevis
ENSDARG00000059634	thumpd3	98	66.311	ENSCVAG00000001019	thumpd3	91	66.311	Cyprinodon_variegatus
ENSDARG00000059634	thumpd3	98	60.168	ENSDNOG00000047668	THUMPD3	91	61.216	Dasypus_novemcinctus
ENSDARG00000059634	thumpd3	93	62.144	ENSDORG00000003257	Thumpd3	90	63.355	Dipodomys_ordii
ENSDARG00000059634	thumpd3	61	62.000	ENSETEG00000020239	-	59	62.000	Echinops_telfairi
ENSDARG00000059634	thumpd3	91	50.688	ENSEBUG00000004221	thumpd3	97	49.887	Eptatretus_burgeri
ENSDARG00000059634	thumpd3	95	58.925	ENSEASG00005013327	THUMPD3	92	59.355	Equus_asinus_asinus
ENSDARG00000059634	thumpd3	95	61.505	ENSECAG00000002016	THUMPD3	92	61.935	Equus_caballus
ENSDARG00000059634	thumpd3	95	55.628	ENSEEUG00000014696	THUMPD3	91	55.844	Erinaceus_europaeus
ENSDARG00000059634	thumpd3	82	80.515	ENSELUG00000018246	thumpd3	93	60.612	Esox_lucius
ENSDARG00000059634	thumpd3	93	60.832	ENSFCAG00000006171	THUMPD3	89	61.488	Felis_catus
ENSDARG00000059634	thumpd3	85	59.016	ENSFALG00000013631	THUMPD3	89	59.016	Ficedula_albicollis
ENSDARG00000059634	thumpd3	95	59.785	ENSFDAG00000014825	THUMPD3	92	60.000	Fukomys_damarensis
ENSDARG00000059634	thumpd3	98	66.596	ENSFHEG00000006006	thumpd3	93	66.667	Fundulus_heteroclitus
ENSDARG00000059634	thumpd3	98	61.006	ENSGMOG00000007923	thumpd3	94	61.635	Gadus_morhua
ENSDARG00000059634	thumpd3	92	58.209	ENSGALG00000044813	THUMPD3	94	59.529	Gallus_gallus
ENSDARG00000059634	thumpd3	55	31.970	ENSGALG00000009119	THUMPD2	60	31.970	Gallus_gallus
ENSDARG00000059634	thumpd3	98	67.089	ENSGAFG00000021645	thumpd3	93	67.089	Gambusia_affinis
ENSDARG00000059634	thumpd3	99	63.598	ENSGACG00000000930	thumpd3	100	63.598	Gasterosteus_aculeatus
ENSDARG00000059634	thumpd3	92	61.339	ENSGAGG00000022750	THUMPD3	91	61.339	Gopherus_agassizii
ENSDARG00000059634	thumpd3	96	60.768	ENSGGOG00000000604	THUMPD3	92	61.422	Gorilla_gorilla
ENSDARG00000059634	thumpd3	99	67.021	ENSHBUG00000013405	thumpd3	93	67.021	Haplochromis_burtoni
ENSDARG00000059634	thumpd3	95	58.562	ENSHGLG00000016200	THUMPD3	92	59.914	Heterocephalus_glaber_female
ENSDARG00000059634	thumpd3	95	58.351	ENSHGLG00100017321	-	92	60.000	Heterocephalus_glaber_male
ENSDARG00000059634	thumpd3	91	51.678	ENSHGLG00100000505	-	91	53.258	Heterocephalus_glaber_male
ENSDARG00000059634	thumpd3	97	65.598	ENSHCOG00000004871	thumpd3	96	65.598	Hippocampus_comes
ENSDARG00000059634	thumpd3	98	69.787	ENSIPUG00000019415	THUMPD3	95	69.574	Ictalurus_punctatus
ENSDARG00000059634	thumpd3	93	64.018	ENSSTOG00000003973	THUMPD3	90	64.018	Ictidomys_tridecemlineatus
ENSDARG00000059634	thumpd3	94	54.447	ENSJJAG00000017751	Thumpd3	89	55.098	Jaculus_jaculus
ENSDARG00000059634	thumpd3	99	65.745	ENSKMAG00000021025	thumpd3	88	65.745	Kryptolebias_marmoratus
ENSDARG00000059634	thumpd3	97	67.304	ENSLBEG00000012252	thumpd3	92	67.304	Labrus_bergylta
ENSDARG00000059634	thumpd3	95	61.099	ENSLACG00000018604	THUMPD3	93	61.099	Latimeria_chalumnae
ENSDARG00000059634	thumpd3	95	60.861	ENSLOCG00000009800	thumpd3	94	63.362	Lepisosteus_oculatus
ENSDARG00000059634	thumpd3	96	60.600	ENSLAFG00000005103	THUMPD3	92	62.527	Loxodonta_africana
ENSDARG00000059634	thumpd3	96	60.554	ENSMFAG00000044884	THUMPD3	94	60.169	Macaca_fascicularis
ENSDARG00000059634	thumpd3	96	60.554	ENSMMUG00000017307	THUMPD3	94	60.169	Macaca_mulatta
ENSDARG00000059634	thumpd3	96	60.554	ENSMNEG00000030529	THUMPD3	94	60.169	Macaca_nemestrina
ENSDARG00000059634	thumpd3	96	60.768	ENSMLEG00000032943	THUMPD3	94	60.381	Mandrillus_leucophaeus
ENSDARG00000059634	thumpd3	98	65.199	ENSMAMG00000023934	thumpd3	94	66.383	Mastacembelus_armatus
ENSDARG00000059634	thumpd3	99	67.021	ENSMZEG00005010623	thumpd3	93	67.021	Maylandia_zebra
ENSDARG00000059634	thumpd3	82	60.891	ENSMGAG00000010182	THUMPD3	100	60.891	Meleagris_gallopavo
ENSDARG00000059634	thumpd3	95	60.213	ENSMAUG00000012250	Thumpd3	92	61.489	Mesocricetus_auratus
ENSDARG00000059634	thumpd3	92	59.740	ENSMICG00000010095	THUMPD3	90	58.723	Microcebus_murinus
ENSDARG00000059634	thumpd3	95	60.981	ENSMOCG00000020148	Thumpd3	92	62.121	Microtus_ochrogaster
ENSDARG00000059634	thumpd3	99	63.158	ENSMMOG00000021791	thumpd3	100	62.218	Mola_mola
ENSDARG00000059634	thumpd3	93	61.171	ENSMODG00000004715	-	90	61.171	Monodelphis_domestica
ENSDARG00000059634	thumpd3	93	66.592	ENSMALG00000017316	thumpd3	93	66.592	Monopterus_albus
ENSDARG00000059634	thumpd3	56	56.890	MGP_CAROLIEiJ_G0028714	-	58	56.890	Mus_caroli
ENSDARG00000059634	thumpd3	93	59.603	ENSMUSG00000030264	Thumpd3	90	61.002	Mus_musculus
ENSDARG00000059634	thumpd3	93	61.220	MGP_PahariEiJ_G0022465	Thumpd3	90	61.220	Mus_pahari
ENSDARG00000059634	thumpd3	93	59.603	MGP_SPRETEiJ_G0029742	Thumpd3	90	61.002	Mus_spretus
ENSDARG00000059634	thumpd3	95	56.494	ENSMPUG00000005219	-	91	56.277	Mustela_putorius_furo
ENSDARG00000059634	thumpd3	95	61.290	ENSMPUG00000017066	-	91	61.505	Mustela_putorius_furo
ENSDARG00000059634	thumpd3	95	61.803	ENSMLUG00000008538	THUMPD3	90	61.803	Myotis_lucifugus
ENSDARG00000059634	thumpd3	94	51.893	ENSNGAG00000001549	-	89	51.670	Nannospalax_galili
ENSDARG00000059634	thumpd3	95	59.785	ENSNGAG00000021014	-	92	61.505	Nannospalax_galili
ENSDARG00000059634	thumpd3	99	67.019	ENSNBRG00000004886	thumpd3	93	67.019	Neolamprologus_brichardi
ENSDARG00000059634	thumpd3	95	61.638	ENSNLEG00000003863	THUMPD3	92	61.638	Nomascus_leucogenys
ENSDARG00000059634	thumpd3	86	59.856	ENSMEUG00000009819	THUMPD3	99	59.856	Notamacropus_eugenii
ENSDARG00000059634	thumpd3	84	61.017	ENSOPRG00000002020	THUMPD3	98	60.922	Ochotona_princeps
ENSDARG00000059634	thumpd3	72	59.040	ENSODEG00000018242	THUMPD3	100	58.757	Octodon_degus
ENSDARG00000059634	thumpd3	99	67.447	ENSONIG00000018977	thumpd3	93	67.447	Oreochromis_niloticus
ENSDARG00000059634	thumpd3	83	59.413	ENSOANG00000014481	THUMPD3	96	59.413	Ornithorhynchus_anatinus
ENSDARG00000059634	thumpd3	95	62.151	ENSOCUG00000010921	THUMPD3	91	62.581	Oryctolagus_cuniculus
ENSDARG00000059634	thumpd3	99	66.667	ENSORLG00000000676	thumpd3	95	66.667	Oryzias_latipes
ENSDARG00000059634	thumpd3	99	67.091	ENSORLG00020007509	thumpd3	95	67.091	Oryzias_latipes_hni
ENSDARG00000059634	thumpd3	99	67.091	ENSORLG00015003615	thumpd3	95	67.091	Oryzias_latipes_hsok
ENSDARG00000059634	thumpd3	99	64.894	ENSOMEG00000014115	thumpd3	95	65.393	Oryzias_melastigma
ENSDARG00000059634	thumpd3	82	58.394	ENSOGAG00000017111	THUMPD3	98	60.794	Otolemur_garnettii
ENSDARG00000059634	thumpd3	94	62.445	ENSOARG00000007139	THUMPD3	89	62.445	Ovis_aries
ENSDARG00000059634	thumpd3	95	61.638	ENSPPAG00000025852	THUMPD3	92	61.638	Pan_paniscus
ENSDARG00000059634	thumpd3	93	60.521	ENSPPRG00000008071	THUMPD3	89	62.914	Panthera_pardus
ENSDARG00000059634	thumpd3	93	62.914	ENSPTIG00000017923	THUMPD3	90	62.914	Panthera_tigris_altaica
ENSDARG00000059634	thumpd3	96	60.768	ENSPTRG00000014585	THUMPD3	92	61.422	Pan_troglodytes
ENSDARG00000059634	thumpd3	96	60.554	ENSPANG00000016253	THUMPD3	93	60.554	Papio_anubis
ENSDARG00000059634	thumpd3	98	64.927	ENSPKIG00000014009	thumpd3	96	64.927	Paramormyrops_kingsleyae
ENSDARG00000059634	thumpd3	92	59.091	ENSPSIG00000007370	THUMPD3	91	59.002	Pelodiscus_sinensis
ENSDARG00000059634	thumpd3	94	64.770	ENSPMGG00000017563	thumpd3	92	64.770	Periophthalmus_magnuspinnatus
ENSDARG00000059634	thumpd3	95	60.560	ENSPEMG00000022411	Thumpd3	92	61.255	Peromyscus_maniculatus_bairdii
ENSDARG00000059634	thumpd3	93	53.020	ENSPMAG00000001291	thumpd3	100	52.902	Petromyzon_marinus
ENSDARG00000059634	thumpd3	95	60.000	ENSPCIG00000002049	THUMPD3	92	60.851	Phascolarctos_cinereus
ENSDARG00000059634	thumpd3	98	68.143	ENSPFOG00000002318	thumpd3	93	68.143	Poecilia_formosa
ENSDARG00000059634	thumpd3	98	68.143	ENSPLAG00000014804	thumpd3	93	68.143	Poecilia_latipinna
ENSDARG00000059634	thumpd3	98	68.143	ENSPMEG00000000582	thumpd3	93	68.143	Poecilia_mexicana
ENSDARG00000059634	thumpd3	98	67.368	ENSPREG00000009176	thumpd3	93	66.526	Poecilia_reticulata
ENSDARG00000059634	thumpd3	96	60.768	ENSPPYG00000029461	THUMPD3	94	60.381	Pongo_abelii
ENSDARG00000059634	thumpd3	93	45.354	ENSPPYG00000017616	-	91	45.575	Pongo_abelii
ENSDARG00000059634	thumpd3	85	63.246	ENSPCAG00000015398	THUMPD3	99	63.007	Procavia_capensis
ENSDARG00000059634	thumpd3	82	57.357	ENSPCOG00000023618	-	91	57.357	Propithecus_coquereli
ENSDARG00000059634	thumpd3	96	51.483	ENSPCOG00000018095	-	93	53.178	Propithecus_coquereli
ENSDARG00000059634	thumpd3	95	61.255	ENSPVAG00000008721	THUMPD3	92	61.255	Pteropus_vampyrus
ENSDARG00000059634	thumpd3	99	67.021	ENSPNYG00000006918	thumpd3	93	67.021	Pundamilia_nyererei
ENSDARG00000059634	thumpd3	98	71.306	ENSPNAG00000014936	thumpd3	95	71.092	Pygocentrus_nattereri
ENSDARG00000059634	thumpd3	92	61.319	ENSRNOG00000006941	Thumpd3	89	62.806	Rattus_norvegicus
ENSDARG00000059634	thumpd3	95	61.123	ENSRBIG00000035954	THUMPD3	93	60.730	Rhinopithecus_bieti
ENSDARG00000059634	thumpd3	95	61.123	ENSRROG00000035734	THUMPD3	93	60.730	Rhinopithecus_roxellana
ENSDARG00000059634	thumpd3	95	59.701	ENSSBOG00000023567	THUMPD3	94	61.283	Saimiri_boliviensis_boliviensis
ENSDARG00000059634	thumpd3	96	59.787	ENSSHAG00000014467	THUMPD3	93	60.842	Sarcophilus_harrisii
ENSDARG00000059634	thumpd3	97	65.684	ENSSFOG00015019210	thumpd3	95	65.263	Scleropages_formosus
ENSDARG00000059634	thumpd3	99	68.008	ENSSMAG00000000609	thumpd3	97	68.008	Scophthalmus_maximus
ENSDARG00000059634	thumpd3	99	66.030	ENSSDUG00000012179	thumpd3	97	66.030	Seriola_dumerili
ENSDARG00000059634	thumpd3	99	66.242	ENSSLDG00000022028	thumpd3	94	66.242	Seriola_lalandi_dorsalis
ENSDARG00000059634	thumpd3	78	67.114	ENSSARG00000002239	THUMPD3	75	67.114	Sorex_araneus
ENSDARG00000059634	thumpd3	92	61.123	ENSSPUG00000017461	THUMPD3	91	61.123	Sphenodon_punctatus
ENSDARG00000059634	thumpd3	98	66.879	ENSSPAG00000008345	thumpd3	91	67.949	Stegastes_partitus
ENSDARG00000059634	thumpd3	94	61.087	ENSSSCG00000011542	THUMPD3	91	61.707	Sus_scrofa
ENSDARG00000059634	thumpd3	92	61.810	ENSTGUG00000010440	THUMPD3	100	61.810	Taeniopygia_guttata
ENSDARG00000059634	thumpd3	97	60.606	ENSTRUG00000004420	thumpd3	95	58.386	Takifugu_rubripes
ENSDARG00000059634	thumpd3	97	66.164	ENSTNIG00000014627	thumpd3	98	66.164	Tetraodon_nigroviridis
ENSDARG00000059634	thumpd3	94	57.860	ENSTBEG00000003450	THUMPD3	90	57.860	Tupaia_belangeri
ENSDARG00000059634	thumpd3	95	61.039	ENSTTRG00000009694	THUMPD3	91	61.039	Tursiops_truncatus
ENSDARG00000059634	thumpd3	95	60.814	ENSUAMG00000009412	THUMPD3	92	61.242	Ursus_americanus
ENSDARG00000059634	thumpd3	95	61.978	ENSUMAG00000019241	THUMPD3	91	62.198	Ursus_maritimus
ENSDARG00000059634	thumpd3	77	59.055	ENSVPAG00000002855	THUMPD3	91	60.630	Vicugna_pacos
ENSDARG00000059634	thumpd3	95	60.860	ENSVVUG00000025278	THUMPD3	92	62.039	Vulpes_vulpes
ENSDARG00000059634	thumpd3	97	59.623	ENSXETG00000001447	thumpd3	93	60.042	Xenopus_tropicalis
ENSDARG00000059634	thumpd3	99	66.186	ENSXCOG00000000159	thumpd3	99	66.186	Xiphophorus_couchianus
ENSDARG00000059634	thumpd3	98	66.667	ENSXMAG00000001423	thumpd3	93	66.667	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0016423	tRNA (guanine) methyltransferase activity	21873635.	IBA	Function
GO:0030488	tRNA methylation	21873635.	IBA	Process