EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000059811 (Gene tree)
Gene ID: 567592
Gene Symbol: smpd5
Alias: Mitochondrial SMase|smpdm|zgc:153995
Full Name: sphingomyelin phosphodiesterase 5
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 23195 bases
Position: chr16:53519048-53542242
Accession: ZDB-GENE-061110-22
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000077993	Exo_endo_phos	PF03372.23	3.4e-08	1	1
ENSDARP00000104571	Exo_endo_phos	PF03372.23	3.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000124691	-	2245	XM_005158452	ENSDARP00000104571	545 (aa)	XP_005158509	F1QG30
ENSDART00000083558	-	2177	-	ENSDARP00000077993	545 (aa)	-	F1QG30

Gene Model

Click here to download ENSDARG00000059811's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00600	Sphingolipid metabolism	KEGG
dre01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000059811's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000059811	smpd5	99	65.265	ENSAPOG00000005846	smpd5	99	65.265	Acanthochromis_polyacanthus
ENSDARG00000059811	smpd5	99	37.778	ENSAMEG00000006154	-	99	37.753	Ailuropoda_melanoleuca
ENSDARG00000059811	smpd5	99	61.379	ENSACIG00000015732	smpd5	99	61.379	Amphilophus_citrinellus
ENSDARG00000059811	smpd5	99	65.448	ENSAOCG00000001729	smpd5	99	65.448	Amphiprion_ocellaris
ENSDARG00000059811	smpd5	99	65.265	ENSAPEG00000010110	smpd5	99	65.265	Amphiprion_percula
ENSDARG00000059811	smpd5	99	63.194	ENSATEG00000005476	smpd5	99	63.194	Anabas_testudineus
ENSDARG00000059811	smpd5	83	45.875	ENSACAG00000005338	-	99	42.006	Anolis_carolinensis
ENSDARG00000059811	smpd5	99	64.599	ENSACLG00000004150	smpd5	99	64.599	Astatotilapia_calliptera
ENSDARG00000059811	smpd5	99	69.245	ENSAMXG00000015890	smpd5	100	69.245	Astyanax_mexicanus
ENSDARG00000059811	smpd5	100	41.063	ENSAMXG00000009000	smpd3	100	41.063	Astyanax_mexicanus
ENSDARG00000059811	smpd5	82	39.826	ENSBTAG00000015040	-	98	39.826	Bos_taurus
ENSDARG00000059811	smpd5	84	44.333	ENSCAFG00020018801	-	97	36.949	Canis_lupus_dingo
ENSDARG00000059811	smpd5	86	48.882	ENSCPBG00000007123	-	92	50.000	Chrysemys_picta_bellii
ENSDARG00000059811	smpd5	99	37.273	ENSCGRG00001020226	Smpd5	94	37.818	Cricetulus_griseus_chok1gshd
ENSDARG00000059811	smpd5	99	37.273	ENSCGRG00000016807	Smpd5	94	37.818	Cricetulus_griseus_crigri
ENSDARG00000059811	smpd5	89	60.853	ENSCSEG00000004339	smpd5	92	60.853	Cynoglossus_semilaevis
ENSDARG00000059811	smpd5	99	37.956	ENSEASG00005009745	-	97	37.956	Equus_asinus_asinus
ENSDARG00000059811	smpd5	99	37.684	ENSECAG00000011998	-	97	37.912	Equus_caballus
ENSDARG00000059811	smpd5	99	62.791	ENSELUG00000002998	smpd5	99	63.123	Esox_lucius
ENSDARG00000059811	smpd5	92	50.313	ENSFCAG00000023364	SMPD3	78	50.313	Felis_catus
ENSDARG00000059811	smpd5	81	64.444	ENSGMOG00000006983	smpd5	100	64.444	Gadus_morhua
ENSDARG00000059811	smpd5	99	59.649	ENSGAFG00000005978	smpd5	99	59.649	Gambusia_affinis
ENSDARG00000059811	smpd5	98	40.182	ENSGAGG00000010557	-	99	40.364	Gopherus_agassizii
ENSDARG00000059811	smpd5	99	64.599	ENSHBUG00000017212	smpd5	99	64.599	Haplochromis_burtoni
ENSDARG00000059811	smpd5	99	61.348	ENSHCOG00000005211	smpd5	100	61.348	Hippocampus_comes
ENSDARG00000059811	smpd5	99	64.779	ENSIPUG00000007675	Smpd3	99	64.779	Ictalurus_punctatus
ENSDARG00000059811	smpd5	99	35.490	ENSSTOG00000026841	-	96	37.153	Ictidomys_tridecemlineatus
ENSDARG00000059811	smpd5	99	57.117	ENSKMAG00000014523	smpd5	99	57.117	Kryptolebias_marmoratus
ENSDARG00000059811	smpd5	99	63.058	ENSLBEG00000000634	smpd5	99	63.058	Labrus_bergylta
ENSDARG00000059811	smpd5	99	62.306	ENSMAMG00000012885	smpd5	99	62.306	Mastacembelus_armatus
ENSDARG00000059811	smpd5	99	62.195	ENSMZEG00005014373	smpd5	99	62.892	Maylandia_zebra
ENSDARG00000059811	smpd5	99	36.881	ENSMICG00000044882	-	97	37.982	Microcebus_murinus
ENSDARG00000059811	smpd5	99	37.409	ENSMOCG00000004813	Smpd5	94	37.409	Microtus_ochrogaster
ENSDARG00000059811	smpd5	99	45.430	ENSMODG00000005091	SMPD3	90	45.430	Monodelphis_domestica
ENSDARG00000059811	smpd5	99	38.858	ENSMODG00000024098	-	96	38.930	Monodelphis_domestica
ENSDARG00000059811	smpd5	99	34.862	ENSMPUG00000007287	-	97	38.278	Mustela_putorius_furo
ENSDARG00000059811	smpd5	99	61.672	ENSNBRG00000015871	smpd5	99	62.369	Neolamprologus_brichardi
ENSDARG00000059811	smpd5	66	45.767	ENSMEUG00000015228	-	88	46.032	Notamacropus_eugenii
ENSDARG00000059811	smpd5	99	61.324	ENSONIG00000003005	smpd5	99	62.021	Oreochromis_niloticus
ENSDARG00000059811	smpd5	99	37.591	ENSOANG00000015137	-	96	38.321	Ornithorhynchus_anatinus
ENSDARG00000059811	smpd5	99	59.720	ENSORLG00000007890	smpd5	99	59.720	Oryzias_latipes
ENSDARG00000059811	smpd5	99	59.545	ENSORLG00020014621	smpd5	99	59.545	Oryzias_latipes_hni
ENSDARG00000059811	smpd5	99	59.895	ENSORLG00015020862	smpd5	99	59.895	Oryzias_latipes_hsok
ENSDARG00000059811	smpd5	99	60.245	ENSOMEG00000021400	smpd5	99	60.245	Oryzias_melastigma
ENSDARG00000059811	smpd5	81	41.956	ENSOARG00000015429	-	89	35.294	Ovis_aries
ENSDARG00000059811	smpd5	99	36.096	ENSPPRG00000024542	-	97	37.132	Panthera_pardus
ENSDARG00000059811	smpd5	99	47.312	ENSPPRG00000012973	SMPD3	85	47.312	Panthera_pardus
ENSDARG00000059811	smpd5	99	43.178	ENSPTIG00000006728	SMPD3	99	43.178	Panthera_tigris_altaica
ENSDARG00000059811	smpd5	100	57.958	ENSPKIG00000019783	smpd5	100	57.958	Paramormyrops_kingsleyae
ENSDARG00000059811	smpd5	92	47.335	ENSPKIG00000015630	smpd3	99	38.725	Paramormyrops_kingsleyae
ENSDARG00000059811	smpd5	99	59.124	ENSPMGG00000011984	smpd5	99	59.124	Periophthalmus_magnuspinnatus
ENSDARG00000059811	smpd5	99	36.976	ENSPEMG00000015740	Smpd5	94	36.976	Peromyscus_maniculatus_bairdii
ENSDARG00000059811	smpd5	99	39.051	ENSPCIG00000009107	-	92	39.964	Phascolarctos_cinereus
ENSDARG00000059811	smpd5	99	59.754	ENSPFOG00000002379	smpd5	99	59.754	Poecilia_formosa
ENSDARG00000059811	smpd5	99	59.894	ENSPLAG00000015772	smpd5	99	59.894	Poecilia_latipinna
ENSDARG00000059811	smpd5	99	60.071	ENSPMEG00000001599	smpd5	99	60.071	Poecilia_mexicana
ENSDARG00000059811	smpd5	99	59.028	ENSPREG00000000831	smpd5	99	59.028	Poecilia_reticulata
ENSDARG00000059811	smpd5	99	64.781	ENSPNYG00000015647	smpd5	99	64.781	Pundamilia_nyererei
ENSDARG00000059811	smpd5	94	47.385	ENSPNAG00000001774	smpd3	79	47.385	Pygocentrus_nattereri
ENSDARG00000059811	smpd5	99	68.603	ENSPNAG00000018539	smpd5	100	68.603	Pygocentrus_nattereri
ENSDARG00000059811	smpd5	87	49.363	ENSSHAG00000006412	SMPD3	81	49.363	Sarcophilus_harrisii
ENSDARG00000059811	smpd5	99	36.300	ENSSHAG00000004065	-	96	37.173	Sarcophilus_harrisii
ENSDARG00000059811	smpd5	100	59.253	ENSSFOG00015000870	smpd5	99	59.253	Scleropages_formosus
ENSDARG00000059811	smpd5	99	63.465	ENSSMAG00000020132	smpd5	99	63.402	Scophthalmus_maximus
ENSDARG00000059811	smpd5	99	60.137	ENSSDUG00000005881	smpd5	99	60.137	Seriola_dumerili
ENSDARG00000059811	smpd5	99	59.794	ENSSLDG00000015320	smpd5	99	59.794	Seriola_lalandi_dorsalis
ENSDARG00000059811	smpd5	99	66.300	ENSSPAG00000007973	smpd5	99	66.300	Stegastes_partitus
ENSDARG00000059811	smpd5	54	45.302	ENSSSCG00000005922	-	97	45.302	Sus_scrofa
ENSDARG00000059811	smpd5	100	59.826	ENSTRUG00000014862	smpd5	99	59.826	Takifugu_rubripes
ENSDARG00000059811	smpd5	99	60.627	ENSTNIG00000018420	smpd5	99	60.627	Tetraodon_nigroviridis
ENSDARG00000059811	smpd5	99	52.038	ENSXETG00000006675	smpd3	83	52.038	Xenopus_tropicalis
ENSDARG00000059811	smpd5	99	43.358	ENSXETG00000031246	-	99	43.358	Xenopus_tropicalis
ENSDARG00000059811	smpd5	99	60.753	ENSXCOG00000019783	smpd5	99	60.753	Xiphophorus_couchianus
ENSDARG00000059811	smpd5	100	61.250	ENSXMAG00000013998	smpd5	99	61.250	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004767	sphingomyelin phosphodiesterase activity	21873635.	IBA	Function
GO:0004767	sphingomyelin phosphodiesterase activity	19429680.	IDA	Function
GO:0004767	sphingomyelin phosphodiesterase activity	-	IEA	Function
GO:0005515	protein binding	21873635.	IBA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005739	mitochondrion	-	IEA	Component
GO:0005741	mitochondrial outer membrane	19429680.	IDA	Component
GO:0005743	mitochondrial inner membrane	-	IEA	Component
GO:0005758	mitochondrial intermembrane space	19429680.	IDA	Component
GO:0005759	mitochondrial matrix	19429680.	IDA	Component
GO:0006629	lipid metabolic process	-	IEA	Process
GO:0006665	sphingolipid metabolic process	-	IEA	Process
GO:0006684	sphingomyelin metabolic process	21873635.	IBA	Process
GO:0006687	glycosphingolipid metabolic process	19429680.	IDA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function