EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000059841 (Gene tree)
Gene ID: 558857
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5383 bases
Position: chr1:54700657-54706039
Accession: ZDB-GENE-080926-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000078068	EXOSC1	PF10447.9	6.7e-15	1	1
ENSDARP00000078068	ECR1_N	PF14382.6	1.8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000083633	-	612	-	ENSDARP00000078068	194 (aa)	-	B8A4H5

Gene Model

Click here to download ENSDARG00000059841's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000059841's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000059841	exosc1	98	80.628	ENSG00000171311	EXOSC1	98	80.628	Homo_sapiens
ENSDARG00000059841	exosc1	100	95.361	ENSAPOG00000007822	exosc1	100	95.361	Acanthochromis_polyacanthus
ENSDARG00000059841	exosc1	98	81.152	ENSAMEG00000000129	EXOSC1	98	81.152	Ailuropoda_melanoleuca
ENSDARG00000059841	exosc1	95	93.514	ENSACIG00000018956	exosc1	91	93.514	Amphilophus_citrinellus
ENSDARG00000059841	exosc1	100	94.845	ENSAOCG00000010699	exosc1	100	94.845	Amphiprion_ocellaris
ENSDARG00000059841	exosc1	93	84.444	ENSAPEG00000012690	exosc1	97	84.444	Amphiprion_percula
ENSDARG00000059841	exosc1	100	94.330	ENSATEG00000018683	exosc1	100	94.330	Anabas_testudineus
ENSDARG00000059841	exosc1	96	80.749	ENSACAG00000002101	EXOSC1	96	80.749	Anolis_carolinensis
ENSDARG00000059841	exosc1	98	80.628	ENSANAG00000034669	EXOSC1	98	80.628	Aotus_nancymaae
ENSDARG00000059841	exosc1	100	94.330	ENSACLG00000021243	exosc1	100	94.330	Astatotilapia_calliptera
ENSDARG00000059841	exosc1	100	97.423	ENSAMXG00000011116	exosc1	100	97.423	Astyanax_mexicanus
ENSDARG00000059841	exosc1	98	81.152	ENSBTAG00000012699	EXOSC1	98	81.152	Bos_taurus
ENSDARG00000059841	exosc1	94	36.126	WBGene00012966	exos-1	92	36.126	Caenorhabditis_elegans
ENSDARG00000059841	exosc1	98	80.105	ENSCJAG00000016586	EXOSC1	98	80.105	Callithrix_jacchus
ENSDARG00000059841	exosc1	98	80.628	ENSCAFG00000009068	EXOSC1	92	80.628	Canis_familiaris
ENSDARG00000059841	exosc1	98	80.628	ENSCAFG00020006002	EXOSC1	92	80.628	Canis_lupus_dingo
ENSDARG00000059841	exosc1	98	81.152	ENSCHIG00000015253	EXOSC1	98	81.152	Capra_hircus
ENSDARG00000059841	exosc1	98	79.581	ENSTSYG00000000760	EXOSC1	98	79.581	Carlito_syrichta
ENSDARG00000059841	exosc1	98	80.628	ENSCPOG00000001173	EXOSC1	98	80.628	Cavia_porcellus
ENSDARG00000059841	exosc1	98	43.005	ENSCCAG00000023986	EXOSC1	98	43.005	Cebus_capucinus
ENSDARG00000059841	exosc1	98	80.628	ENSCATG00000034114	EXOSC1	98	80.628	Cercocebus_atys
ENSDARG00000059841	exosc1	98	80.628	ENSCLAG00000002463	EXOSC1	98	80.628	Chinchilla_lanigera
ENSDARG00000059841	exosc1	98	80.105	ENSCSAG00000005870	EXOSC1	98	80.105	Chlorocebus_sabaeus
ENSDARG00000059841	exosc1	95	67.935	ENSCHOG00000006477	EXOSC1	98	67.935	Choloepus_hoffmanni
ENSDARG00000059841	exosc1	55	71.963	ENSCPBG00000011949	EXOSC1	88	71.963	Chrysemys_picta_bellii
ENSDARG00000059841	exosc1	99	52.850	ENSCING00000022734	-	92	52.850	Ciona_intestinalis
ENSDARG00000059841	exosc1	99	56.477	ENSCSAVG00000010865	-	98	56.477	Ciona_savignyi
ENSDARG00000059841	exosc1	98	80.628	ENSCANG00000034159	EXOSC1	98	80.628	Colobus_angolensis_palliatus
ENSDARG00000059841	exosc1	98	79.581	ENSCGRG00001000335	Exosc1	98	79.581	Cricetulus_griseus_chok1gshd
ENSDARG00000059841	exosc1	98	79.581	ENSCGRG00000011602	Exosc1	98	79.581	Cricetulus_griseus_crigri
ENSDARG00000059841	exosc1	100	79.897	ENSCSEG00000007895	exosc1	97	79.897	Cynoglossus_semilaevis
ENSDARG00000059841	exosc1	100	85.567	ENSCVAG00000016748	exosc1	100	85.567	Cyprinodon_variegatus
ENSDARG00000059841	exosc1	74	77.931	ENSDNOG00000007983	EXOSC1	98	77.931	Dasypus_novemcinctus
ENSDARG00000059841	exosc1	98	80.105	ENSDORG00000016528	Exosc1	98	80.105	Dipodomys_ordii
ENSDARG00000059841	exosc1	95	50.000	FBgn0032346	Csl4	92	50.000	Drosophila_melanogaster
ENSDARG00000059841	exosc1	98	79.058	ENSETEG00000002469	-	98	79.058	Echinops_telfairi
ENSDARG00000059841	exosc1	97	66.667	ENSEBUG00000008164	exosc1	96	66.667	Eptatretus_burgeri
ENSDARG00000059841	exosc1	98	71.728	ENSEASG00005008684	EXOSC1	98	71.728	Equus_asinus_asinus
ENSDARG00000059841	exosc1	60	57.759	ENSECAG00000010621	EXOSC1	69	57.759	Equus_caballus
ENSDARG00000059841	exosc1	98	79.581	ENSEEUG00000005647	EXOSC1	98	79.581	Erinaceus_europaeus
ENSDARG00000059841	exosc1	99	89.848	ENSELUG00000017369	exosc1	87	89.848	Esox_lucius
ENSDARG00000059841	exosc1	98	81.152	ENSFCAG00000040563	EXOSC1	92	81.152	Felis_catus
ENSDARG00000059841	exosc1	98	80.628	ENSFALG00000008450	EXOSC1	98	80.628	Ficedula_albicollis
ENSDARG00000059841	exosc1	98	81.152	ENSFDAG00000000846	EXOSC1	98	81.152	Fukomys_damarensis
ENSDARG00000059841	exosc1	100	86.082	ENSFHEG00000009154	exosc1	100	86.082	Fundulus_heteroclitus
ENSDARG00000059841	exosc1	100	93.299	ENSGMOG00000008993	exosc1	100	93.299	Gadus_morhua
ENSDARG00000059841	exosc1	98	69.110	ENSGALG00000039917	EXOSC1	99	84.828	Gallus_gallus
ENSDARG00000059841	exosc1	100	86.598	ENSGAFG00000010265	exosc1	95	86.598	Gambusia_affinis
ENSDARG00000059841	exosc1	100	91.753	ENSGACG00000018936	exosc1	100	91.753	Gasterosteus_aculeatus
ENSDARG00000059841	exosc1	98	80.105	ENSGAGG00000019192	EXOSC1	98	80.105	Gopherus_agassizii
ENSDARG00000059841	exosc1	98	69.634	ENSGGOG00000003099	EXOSC1	98	69.634	Gorilla_gorilla
ENSDARG00000059841	exosc1	100	94.330	ENSHBUG00000017857	exosc1	100	94.330	Haplochromis_burtoni
ENSDARG00000059841	exosc1	98	80.628	ENSHGLG00000016927	EXOSC1	98	80.628	Heterocephalus_glaber_female
ENSDARG00000059841	exosc1	98	80.628	ENSHGLG00100012208	EXOSC1	98	80.628	Heterocephalus_glaber_male
ENSDARG00000059841	exosc1	100	91.753	ENSHCOG00000019882	exosc1	100	91.753	Hippocampus_comes
ENSDARG00000059841	exosc1	100	94.330	ENSIPUG00000007685	exosc1	100	94.330	Ictalurus_punctatus
ENSDARG00000059841	exosc1	59	67.544	ENSSTOG00000029860	-	87	67.544	Ictidomys_tridecemlineatus
ENSDARG00000059841	exosc1	98	80.105	ENSSTOG00000006615	EXOSC1	98	80.105	Ictidomys_tridecemlineatus
ENSDARG00000059841	exosc1	98	80.628	ENSJJAG00000013311	Exosc1	98	80.628	Jaculus_jaculus
ENSDARG00000059841	exosc1	100	90.206	ENSKMAG00000001202	exosc1	82	90.206	Kryptolebias_marmoratus
ENSDARG00000059841	exosc1	100	93.814	ENSLBEG00000011448	exosc1	100	93.814	Labrus_bergylta
ENSDARG00000059841	exosc1	100	69.000	ENSLOCG00000003776	exosc1	100	69.000	Lepisosteus_oculatus
ENSDARG00000059841	exosc1	98	80.628	ENSLAFG00000015983	EXOSC1	98	80.628	Loxodonta_africana
ENSDARG00000059841	exosc1	98	80.628	ENSMFAG00000001493	EXOSC1	98	80.628	Macaca_fascicularis
ENSDARG00000059841	exosc1	98	80.628	ENSMMUG00000020028	EXOSC1	98	74.359	Macaca_mulatta
ENSDARG00000059841	exosc1	98	80.628	ENSMNEG00000029816	EXOSC1	98	80.628	Macaca_nemestrina
ENSDARG00000059841	exosc1	98	75.393	ENSMLEG00000027643	EXOSC1	98	75.393	Mandrillus_leucophaeus
ENSDARG00000059841	exosc1	100	94.330	ENSMAMG00000012200	exosc1	100	94.330	Mastacembelus_armatus
ENSDARG00000059841	exosc1	100	94.330	ENSMZEG00005007042	exosc1	100	94.330	Maylandia_zebra
ENSDARG00000059841	exosc1	98	69.634	ENSMAUG00000020462	-	98	69.634	Mesocricetus_auratus
ENSDARG00000059841	exosc1	98	80.628	ENSMICG00000007664	EXOSC1	91	80.628	Microcebus_murinus
ENSDARG00000059841	exosc1	98	79.581	ENSMOCG00000006004	-	98	79.581	Microtus_ochrogaster
ENSDARG00000059841	exosc1	97	75.661	ENSMOCG00000017124	-	96	75.661	Microtus_ochrogaster
ENSDARG00000059841	exosc1	100	69.588	ENSMMOG00000021403	exosc1	100	69.588	Mola_mola
ENSDARG00000059841	exosc1	98	81.250	ENSMODG00000004213	EXOSC1	98	81.250	Monodelphis_domestica
ENSDARG00000059841	exosc1	95	94.595	ENSMALG00000007061	exosc1	93	94.595	Monopterus_albus
ENSDARG00000059841	exosc1	98	79.058	MGP_CAROLIEiJ_G0022959	Exosc1	98	79.058	Mus_caroli
ENSDARG00000059841	exosc1	98	79.058	ENSMUSG00000034321	Exosc1	98	79.058	Mus_musculus
ENSDARG00000059841	exosc1	98	79.581	MGP_PahariEiJ_G0014449	Exosc1	98	79.581	Mus_pahari
ENSDARG00000059841	exosc1	98	79.058	MGP_SPRETEiJ_G0023880	Exosc1	98	79.058	Mus_spretus
ENSDARG00000059841	exosc1	98	81.152	ENSMPUG00000017044	EXOSC1	98	81.152	Mustela_putorius_furo
ENSDARG00000059841	exosc1	98	80.628	ENSMLUG00000009228	EXOSC1	98	80.628	Myotis_lucifugus
ENSDARG00000059841	exosc1	98	78.010	ENSNGAG00000022033	Exosc1	98	78.010	Nannospalax_galili
ENSDARG00000059841	exosc1	100	73.711	ENSNBRG00000024007	exosc1	99	73.711	Neolamprologus_brichardi
ENSDARG00000059841	exosc1	98	80.105	ENSNLEG00000013872	EXOSC1	98	80.105	Nomascus_leucogenys
ENSDARG00000059841	exosc1	58	74.107	ENSMEUG00000002246	EXOSC1	97	74.107	Notamacropus_eugenii
ENSDARG00000059841	exosc1	98	80.105	ENSOPRG00000005065	EXOSC1	98	80.105	Ochotona_princeps
ENSDARG00000059841	exosc1	98	81.152	ENSODEG00000016709	EXOSC1	98	81.152	Octodon_degus
ENSDARG00000059841	exosc1	100	94.845	ENSONIG00000017683	exosc1	99	94.845	Oreochromis_niloticus
ENSDARG00000059841	exosc1	59	89.474	ENSOANG00000006563	EXOSC1	98	86.179	Ornithorhynchus_anatinus
ENSDARG00000059841	exosc1	98	79.688	ENSOCUG00000011898	-	98	79.688	Oryctolagus_cuniculus
ENSDARG00000059841	exosc1	98	74.869	ENSOCUG00000026461	-	98	74.869	Oryctolagus_cuniculus
ENSDARG00000059841	exosc1	100	87.179	ENSORLG00000011595	exosc1	100	87.179	Oryzias_latipes
ENSDARG00000059841	exosc1	100	87.179	ENSORLG00020005831	exosc1	100	87.179	Oryzias_latipes_hni
ENSDARG00000059841	exosc1	100	86.667	ENSORLG00015004317	exosc1	100	86.667	Oryzias_latipes_hsok
ENSDARG00000059841	exosc1	100	74.227	ENSOMEG00000013907	exosc1	99	74.227	Oryzias_melastigma
ENSDARG00000059841	exosc1	98	80.105	ENSOGAG00000016259	EXOSC1	98	80.105	Otolemur_garnettii
ENSDARG00000059841	exosc1	98	80.628	ENSOARG00000010136	EXOSC1	98	80.628	Ovis_aries
ENSDARG00000059841	exosc1	98	75.130	ENSPPAG00000039842	EXOSC1	98	75.130	Pan_paniscus
ENSDARG00000059841	exosc1	98	81.152	ENSPPRG00000023366	EXOSC1	98	81.152	Panthera_pardus
ENSDARG00000059841	exosc1	98	81.152	ENSPTIG00000017701	EXOSC1	98	81.152	Panthera_tigris_altaica
ENSDARG00000059841	exosc1	98	80.628	ENSPTRG00000002808	EXOSC1	98	80.628	Pan_troglodytes
ENSDARG00000059841	exosc1	98	80.628	ENSPANG00000021324	EXOSC1	98	80.628	Papio_anubis
ENSDARG00000059841	exosc1	100	93.814	ENSPKIG00000016037	exosc1	100	93.814	Paramormyrops_kingsleyae
ENSDARG00000059841	exosc1	91	66.842	ENSPSIG00000013571	EXOSC1	98	80.165	Pelodiscus_sinensis
ENSDARG00000059841	exosc1	100	80.412	ENSPMGG00000014002	exosc1	100	80.412	Periophthalmus_magnuspinnatus
ENSDARG00000059841	exosc1	98	79.581	ENSPEMG00000010710	-	98	79.581	Peromyscus_maniculatus_bairdii
ENSDARG00000059841	exosc1	95	71.505	ENSPMAG00000000195	exosc1	95	71.505	Petromyzon_marinus
ENSDARG00000059841	exosc1	98	80.628	ENSPCIG00000002210	EXOSC1	97	80.628	Phascolarctos_cinereus
ENSDARG00000059841	exosc1	100	85.567	ENSPFOG00000006755	exosc1	95	85.567	Poecilia_formosa
ENSDARG00000059841	exosc1	100	85.567	ENSPLAG00000005880	exosc1	100	85.567	Poecilia_latipinna
ENSDARG00000059841	exosc1	100	85.567	ENSPMEG00000015598	exosc1	95	85.567	Poecilia_mexicana
ENSDARG00000059841	exosc1	100	73.196	ENSPREG00000000405	exosc1	94	73.196	Poecilia_reticulata
ENSDARG00000059841	exosc1	98	80.628	ENSPPYG00000002531	EXOSC1	98	80.628	Pongo_abelii
ENSDARG00000059841	exosc1	98	79.581	ENSPCAG00000009135	EXOSC1	98	79.581	Procavia_capensis
ENSDARG00000059841	exosc1	98	74.869	ENSPCOG00000027539	EXOSC1	98	74.869	Propithecus_coquereli
ENSDARG00000059841	exosc1	98	80.628	ENSPVAG00000003372	EXOSC1	98	80.628	Pteropus_vampyrus
ENSDARG00000059841	exosc1	100	94.330	ENSPNYG00000021745	exosc1	100	94.330	Pundamilia_nyererei
ENSDARG00000059841	exosc1	100	96.392	ENSPNAG00000001944	exosc1	100	96.392	Pygocentrus_nattereri
ENSDARG00000059841	exosc1	98	79.581	ENSRNOG00000048708	Exosc1	98	79.581	Rattus_norvegicus
ENSDARG00000059841	exosc1	98	80.628	ENSRBIG00000035618	EXOSC1	98	80.628	Rhinopithecus_bieti
ENSDARG00000059841	exosc1	98	80.628	ENSRROG00000032589	EXOSC1	91	80.628	Rhinopithecus_roxellana
ENSDARG00000059841	exosc1	65	37.423	YNL232W	CSL4	55	37.423	Saccharomyces_cerevisiae
ENSDARG00000059841	exosc1	98	80.628	ENSSBOG00000000359	EXOSC1	98	80.628	Saimiri_boliviensis_boliviensis
ENSDARG00000059841	exosc1	75	88.356	ENSSHAG00000018219	EXOSC1	99	88.356	Sarcophilus_harrisii
ENSDARG00000059841	exosc1	100	90.722	ENSSFOG00015016289	-	100	90.722	Scleropages_formosus
ENSDARG00000059841	exosc1	100	92.268	ENSSFOG00015009069	exosc1	100	92.268	Scleropages_formosus
ENSDARG00000059841	exosc1	100	94.330	ENSSMAG00000003721	exosc1	100	94.330	Scophthalmus_maximus
ENSDARG00000059841	exosc1	100	93.814	ENSSDUG00000002993	exosc1	100	93.814	Seriola_dumerili
ENSDARG00000059841	exosc1	100	93.814	ENSSLDG00000025181	exosc1	100	93.814	Seriola_lalandi_dorsalis
ENSDARG00000059841	exosc1	98	69.110	ENSSARG00000000162	EXOSC1	98	69.110	Sorex_araneus
ENSDARG00000059841	exosc1	98	77.487	ENSSPUG00000012263	EXOSC1	98	77.487	Sphenodon_punctatus
ENSDARG00000059841	exosc1	100	86.082	ENSSPAG00000016792	exosc1	83	86.082	Stegastes_partitus
ENSDARG00000059841	exosc1	98	80.105	ENSSSCG00000010518	EXOSC1	89	80.105	Sus_scrofa
ENSDARG00000059841	exosc1	98	79.058	ENSTGUG00000009692	EXOSC1	98	79.058	Taeniopygia_guttata
ENSDARG00000059841	exosc1	98	80.526	ENSTRUG00000007706	exosc1	98	80.526	Takifugu_rubripes
ENSDARG00000059841	exosc1	98	80.311	ENSTNIG00000014079	exosc1	97	80.311	Tetraodon_nigroviridis
ENSDARG00000059841	exosc1	98	74.346	ENSTBEG00000006011	EXOSC1	98	74.346	Tupaia_belangeri
ENSDARG00000059841	exosc1	94	82.514	ENSTTRG00000009887	EXOSC1	99	82.514	Tursiops_truncatus
ENSDARG00000059841	exosc1	98	65.445	ENSUAMG00000010266	EXOSC1	98	65.445	Ursus_americanus
ENSDARG00000059841	exosc1	98	65.445	ENSUMAG00000022002	EXOSC1	98	65.445	Ursus_maritimus
ENSDARG00000059841	exosc1	98	80.628	ENSVVUG00000023192	EXOSC1	62	80.628	Vulpes_vulpes
ENSDARG00000059841	exosc1	99	78.756	ENSXETG00000003434	exosc1	99	78.756	Xenopus_tropicalis
ENSDARG00000059841	exosc1	62	87.603	ENSXCOG00000014499	exosc1	93	87.603	Xiphophorus_couchianus
ENSDARG00000059841	exosc1	100	73.711	ENSXMAG00000023382	exosc1	94	73.711	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	-	IEA	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0005730	nucleolus	-	ISS	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006396	RNA processing	-	IEA	Process