EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000059871 (Gene tree)
Gene ID: 569903
Gene Symbol: shrprbck1r
Alias: sipl1-rbck1|zgc:175152
Full Name: sharpin and rbck1 related
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 23297 bases
Position: chr7:40058757-40082053
Accession: ZDB-GENE-080220-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000142955	zf-RanBP	PF00641.18	2.3e-07	1	1
ENSDARP00000078154	zf-RanBP	PF00641.18	3.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000173687	-	3884	XM_005166435	ENSDARP00000142955	478 (aa)	XP_005166492	A0A1D5NSY4
ENSDART00000083719	-	4393	-	ENSDARP00000078154	714 (aa)	-	A9JTG5

Gene Model

Click here to download ENSDARG00000059871's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre04217	Necroptosis	KEGG
dre04621	NOD-like receptor signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000059871's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000059871	shrprbck1r	84	53.846	ENSDARG00000076995	sharpin	95	53.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000059871	shrprbck1r	98	56.933	ENSAPOG00000023352	sharpin	99	56.723	Acanthochromis_polyacanthus
ENSDARG00000059871	shrprbck1r	100	72.438	ENSAPOG00000022737	shrprbck1r	100	72.299	Acanthochromis_polyacanthus
ENSDARG00000059871	shrprbck1r	100	71.369	ENSACIG00000002184	shrprbck1r	100	70.954	Amphilophus_citrinellus
ENSDARG00000059871	shrprbck1r	98	57.143	ENSAOCG00000017464	sharpin	99	56.933	Amphiprion_ocellaris
ENSDARG00000059871	shrprbck1r	100	72.022	ENSAOCG00000002890	shrprbck1r	100	71.745	Amphiprion_ocellaris
ENSDARG00000059871	shrprbck1r	98	57.143	ENSAPEG00000004049	sharpin	99	56.933	Amphiprion_percula
ENSDARG00000059871	shrprbck1r	100	70.914	ENSAPEG00000023274	shrprbck1r	100	70.637	Amphiprion_percula
ENSDARG00000059871	shrprbck1r	100	70.000	ENSATEG00000014561	shrprbck1r	100	69.583	Anabas_testudineus
ENSDARG00000059871	shrprbck1r	90	60.880	ENSATEG00000007832	sharpin	87	60.648	Anabas_testudineus
ENSDARG00000059871	shrprbck1r	55	62.500	ENSACLG00000020160	-	83	62.500	Astatotilapia_calliptera
ENSDARG00000059871	shrprbck1r	100	70.954	ENSACLG00000022609	shrprbck1r	100	70.539	Astatotilapia_calliptera
ENSDARG00000059871	shrprbck1r	82	54.156	ENSAMXG00000006229	sharpin	96	54.156	Astyanax_mexicanus
ENSDARG00000059871	shrprbck1r	100	78.512	ENSAMXG00000021016	shrprbck1r	100	78.512	Astyanax_mexicanus
ENSDARG00000059871	shrprbck1r	100	69.156	ENSCSEG00000011306	shrprbck1r	100	68.465	Cynoglossus_semilaevis
ENSDARG00000059871	shrprbck1r	100	69.124	ENSCVAG00000007250	shrprbck1r	100	68.985	Cyprinodon_variegatus
ENSDARG00000059871	shrprbck1r	97	53.895	ENSCVAG00000006586	sharpin	99	53.797	Cyprinodon_variegatus
ENSDARG00000059871	shrprbck1r	100	73.780	ENSELUG00000016022	shrprbck1r	100	73.780	Esox_lucius
ENSDARG00000059871	shrprbck1r	97	53.945	ENSFHEG00000013564	sharpin	98	53.945	Fundulus_heteroclitus
ENSDARG00000059871	shrprbck1r	78	61.818	ENSGMOG00000010123	sharpin	92	61.818	Gadus_morhua
ENSDARG00000059871	shrprbck1r	89	44.289	ENSGAFG00000021405	sharpin	95	44.522	Gambusia_affinis
ENSDARG00000059871	shrprbck1r	100	67.406	ENSGAFG00000009309	shrprbck1r	100	67.268	Gambusia_affinis
ENSDARG00000059871	shrprbck1r	75	68.715	ENSGACG00000002544	shrprbck1r	99	68.715	Gasterosteus_aculeatus
ENSDARG00000059871	shrprbck1r	100	70.954	ENSHBUG00000021933	shrprbck1r	100	70.539	Haplochromis_burtoni
ENSDARG00000059871	shrprbck1r	90	54.965	ENSHCOG00000018847	sharpin	80	56.351	Hippocampus_comes
ENSDARG00000059871	shrprbck1r	97	75.325	ENSIPUG00000014247	shrprbck1r	96	75.325	Ictalurus_punctatus
ENSDARG00000059871	shrprbck1r	72	73.077	ENSIPUG00000011951	sharpin	94	73.077	Ictalurus_punctatus
ENSDARG00000059871	shrprbck1r	89	57.110	ENSKMAG00000015204	sharpin	76	57.110	Kryptolebias_marmoratus
ENSDARG00000059871	shrprbck1r	100	68.356	ENSKMAG00000015215	shrprbck1r	100	68.219	Kryptolebias_marmoratus
ENSDARG00000059871	shrprbck1r	98	57.173	ENSLBEG00000016624	sharpin	99	56.962	Labrus_bergylta
ENSDARG00000059871	shrprbck1r	100	71.468	ENSLBEG00000016876	shrprbck1r	100	71.468	Labrus_bergylta
ENSDARG00000059871	shrprbck1r	95	53.079	ENSLACG00000010948	-	96	53.079	Latimeria_chalumnae
ENSDARG00000059871	shrprbck1r	100	70.042	ENSLOCG00000008910	shrprbck1r	100	70.319	Lepisosteus_oculatus
ENSDARG00000059871	shrprbck1r	100	69.167	ENSMAMG00000022930	shrprbck1r	100	69.167	Mastacembelus_armatus
ENSDARG00000059871	shrprbck1r	74	61.290	ENSMAMG00000014645	sharpin	94	61.290	Mastacembelus_armatus
ENSDARG00000059871	shrprbck1r	100	70.816	ENSMZEG00005021257	shrprbck1r	100	70.401	Maylandia_zebra
ENSDARG00000059871	shrprbck1r	54	69.880	ENSMMOG00000016788	sharpin	84	68.675	Mola_mola
ENSDARG00000059871	shrprbck1r	100	70.759	ENSMMOG00000003764	shrprbck1r	100	70.442	Mola_mola
ENSDARG00000059871	shrprbck1r	74	61.290	ENSMALG00000020528	sharpin	95	61.290	Monopterus_albus
ENSDARG00000059871	shrprbck1r	96	72.134	ENSMALG00000008861	shrprbck1r	96	71.655	Monopterus_albus
ENSDARG00000059871	shrprbck1r	53	53.640	ENSNBRG00000012382	sharpin	87	53.640	Neolamprologus_brichardi
ENSDARG00000059871	shrprbck1r	100	70.816	ENSNBRG00000002270	shrprbck1r	100	70.401	Neolamprologus_brichardi
ENSDARG00000059871	shrprbck1r	85	53.901	ENSONIG00000009626	-	99	53.901	Oreochromis_niloticus
ENSDARG00000059871	shrprbck1r	100	71.231	ENSONIG00000014401	shrprbck1r	100	70.816	Oreochromis_niloticus
ENSDARG00000059871	shrprbck1r	100	69.819	ENSORLG00000007392	shrprbck1r	100	69.819	Oryzias_latipes
ENSDARG00000059871	shrprbck1r	90	57.931	ENSORLG00000017281	sharpin	95	56.659	Oryzias_latipes
ENSDARG00000059871	shrprbck1r	96	56.034	ENSORLG00020000801	sharpin	99	54.873	Oryzias_latipes_hni
ENSDARG00000059871	shrprbck1r	100	69.559	ENSORLG00020018619	shrprbck1r	100	69.559	Oryzias_latipes_hni
ENSDARG00000059871	shrprbck1r	90	58.065	ENSORLG00015009860	sharpin	95	56.787	Oryzias_latipes_hsok
ENSDARG00000059871	shrprbck1r	100	69.402	ENSORLG00015018865	shrprbck1r	100	69.402	Oryzias_latipes_hsok
ENSDARG00000059871	shrprbck1r	73	69.231	ENSOMEG00000005729	sharpin	87	66.667	Oryzias_melastigma
ENSDARG00000059871	shrprbck1r	100	70.596	ENSOMEG00000012749	shrprbck1r	100	70.458	Oryzias_melastigma
ENSDARG00000059871	shrprbck1r	100	60.825	ENSPKIG00000018308	-	99	60.825	Paramormyrops_kingsleyae
ENSDARG00000059871	shrprbck1r	100	75.350	ENSPKIG00000006933	shrprbck1r	100	75.350	Paramormyrops_kingsleyae
ENSDARG00000059871	shrprbck1r	100	68.619	ENSPMGG00000013254	shrprbck1r	100	68.480	Periophthalmus_magnuspinnatus
ENSDARG00000059871	shrprbck1r	100	67.961	ENSPFOG00000004214	shrprbck1r	100	67.822	Poecilia_formosa
ENSDARG00000059871	shrprbck1r	97	53.945	ENSPFOG00000015253	sharpin	98	54.158	Poecilia_formosa
ENSDARG00000059871	shrprbck1r	100	67.961	ENSPLAG00000020523	shrprbck1r	100	67.822	Poecilia_latipinna
ENSDARG00000059871	shrprbck1r	97	54.158	ENSPLAG00000000423	sharpin	98	54.371	Poecilia_latipinna
ENSDARG00000059871	shrprbck1r	100	68.100	ENSPMEG00000006877	shrprbck1r	100	67.961	Poecilia_mexicana
ENSDARG00000059871	shrprbck1r	76	56.198	ENSPMEG00000023030	sharpin	89	57.025	Poecilia_mexicana
ENSDARG00000059871	shrprbck1r	97	54.060	ENSPREG00000009702	sharpin	98	54.274	Poecilia_reticulata
ENSDARG00000059871	shrprbck1r	100	67.545	ENSPREG00000014689	shrprbck1r	100	67.406	Poecilia_reticulata
ENSDARG00000059871	shrprbck1r	100	71.093	ENSPNYG00000022601	shrprbck1r	100	70.678	Pundamilia_nyererei
ENSDARG00000059871	shrprbck1r	82	52.645	ENSPNAG00000002911	sharpin	99	53.518	Pygocentrus_nattereri
ENSDARG00000059871	shrprbck1r	100	76.828	ENSPNAG00000007847	shrprbck1r	100	76.966	Pygocentrus_nattereri
ENSDARG00000059871	shrprbck1r	75	63.383	ENSSFOG00015014150	-	96	63.383	Scleropages_formosus
ENSDARG00000059871	shrprbck1r	94	52.419	ENSSFOG00015004028	sharpin	99	52.495	Scleropages_formosus
ENSDARG00000059871	shrprbck1r	100	69.357	ENSSMAG00000018085	shrprbck1r	100	69.494	Scophthalmus_maximus
ENSDARG00000059871	shrprbck1r	100	72.276	ENSSDUG00000002959	shrprbck1r	100	71.862	Seriola_dumerili
ENSDARG00000059871	shrprbck1r	90	45.455	ENSSDUG00000019039	sharpin	96	45.227	Seriola_dumerili
ENSDARG00000059871	shrprbck1r	100	72.552	ENSSLDG00000009026	shrprbck1r	100	72.138	Seriola_lalandi_dorsalis
ENSDARG00000059871	shrprbck1r	56	59.825	ENSSPAG00000021807	sharpin	94	59.825	Stegastes_partitus
ENSDARG00000059871	shrprbck1r	96	71.695	ENSSPAG00000016097	shrprbck1r	99	71.408	Stegastes_partitus
ENSDARG00000059871	shrprbck1r	100	70.139	ENSTRUG00000006949	shrprbck1r	100	69.806	Takifugu_rubripes
ENSDARG00000059871	shrprbck1r	89	52.693	ENSTRUG00000011046	sharpin	95	52.315	Takifugu_rubripes
ENSDARG00000059871	shrprbck1r	85	54.699	ENSTNIG00000008521	sharpin	97	55.048	Tetraodon_nigroviridis
ENSDARG00000059871	shrprbck1r	100	67.036	ENSXCOG00000006701	shrprbck1r	100	66.898	Xiphophorus_couchianus
ENSDARG00000059871	shrprbck1r	73	65.517	ENSXCOG00000015019	sharpin	96	50.313	Xiphophorus_couchianus
ENSDARG00000059871	shrprbck1r	97	54.487	ENSXMAG00000022076	sharpin	98	54.701	Xiphophorus_maculatus
ENSDARG00000059871	shrprbck1r	100	66.759	ENSXMAG00000018972	shrprbck1r	100	66.620	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004842	ubiquitin-protein transferase activity	21873635.	IBA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	21873635.	IBA	Process
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	-	ISS	Process
GO:0043130	ubiquitin binding	21873635.	IBA	Function
GO:0043130	ubiquitin binding	-	ISS	Function
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048701	embryonic cranial skeleton morphogenesis	20956555.	IMP	Process
GO:0071600	otic vesicle morphogenesis	20956555.	IMP	Process
GO:0071797	LUBAC complex	21873635.	IBA	Component
GO:0071797	LUBAC complex	-	ISS	Component
GO:0097039	protein linear polyubiquitination	21873635.	IBA	Process
GO:0097039	protein linear polyubiquitination	-	ISS	Process