EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000059972 (Gene tree)
Gene ID: 402903
Gene Symbol: raly
Alias: zgc:103445
Full Name: RALY heterogeneous nuclear ribonucleoprotein
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 182853 bases
Position: chr6:50021410-50204262
Accession: ZDB-GENE-041010-127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000118719	RRM_1	PF00076.22	2.3e-11	1	1
ENSDARP00000078434	RRM_1	PF00076.22	3.2e-11	1	1
ENSDARP00000139787	RRM_1	PF00076.22	3.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000163648	-	2891	-	ENSDARP00000139787	273 (aa)	-	F1QAY0
ENSDART00000143050	-	1005	XM_005172104	ENSDARP00000118719	257 (aa)	XP_005172161	F1QKR6
ENSDART00000083999	-	1531	XM_005172103	ENSDARP00000078434	273 (aa)	XP_005172160	F1QAY0

Gene Model

Click here to download ENSDARG00000059972's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000059972's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000059972	raly	86	50.204	ENSDARG00000053810	hnrnpc	81	44.151
ENSDARG00000059972	raly	86	50.000	ENSDARG00000103845	zgc:55733	96	45.683
ENSDARG00000059972	raly	62	65.116	ENSDARG00000090292	ralyl	73	71.034

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000059972	raly	78	81.395	ENSG00000125970	RALY	100	91.011	Homo_sapiens
ENSDARG00000059972	raly	99	70.979	ENSAPOG00000001026	raly	98	72.727	Acanthochromis_polyacanthus
ENSDARG00000059972	raly	78	83.256	ENSAMEG00000009050	RALY	70	83.256	Ailuropoda_melanoleuca
ENSDARG00000059972	raly	93	78.210	ENSACIG00000024288	raly	98	78.210	Amphilophus_citrinellus
ENSDARG00000059972	raly	88	79.918	ENSAOCG00000009883	raly	84	75.000	Amphiprion_ocellaris
ENSDARG00000059972	raly	88	79.918	ENSAPEG00000024106	raly	85	75.000	Amphiprion_percula
ENSDARG00000059972	raly	82	79.339	ENSATEG00000004870	raly	97	71.769	Anabas_testudineus
ENSDARG00000059972	raly	95	75.472	ENSAPLG00000012983	RALY	94	75.472	Anas_platyrhynchos
ENSDARG00000059972	raly	99	73.913	ENSACAG00000008983	RALY	86	74.638	Anolis_carolinensis
ENSDARG00000059972	raly	82	78.319	ENSANAG00000019376	RALY	76	78.319	Aotus_nancymaae
ENSDARG00000059972	raly	83	83.550	ENSACLG00000007561	raly	87	74.286	Astatotilapia_calliptera
ENSDARG00000059972	raly	79	79.227	ENSBTAG00000016524	RALY	79	75.785	Bos_taurus
ENSDARG00000059972	raly	82	78.319	ENSCJAG00000018361	-	77	75.210	Callithrix_jacchus
ENSDARG00000059972	raly	81	76.190	ENSCJAG00000009449	-	76	72.973	Callithrix_jacchus
ENSDARG00000059972	raly	78	83.256	ENSCAFG00000007490	RALY	82	77.083	Canis_familiaris
ENSDARG00000059972	raly	78	83.256	ENSCAFG00020005069	RALY	82	77.083	Canis_lupus_dingo
ENSDARG00000059972	raly	78	82.791	ENSCHIG00000026609	RALY	79	77.311	Capra_hircus
ENSDARG00000059972	raly	78	81.395	ENSTSYG00000002598	RALY	81	74.667	Carlito_syrichta
ENSDARG00000059972	raly	81	72.381	ENSCAPG00000008110	RALY	99	72.381	Cavia_aperea
ENSDARG00000059972	raly	82	80.088	ENSCPOG00000000309	RALY	99	79.048	Cavia_porcellus
ENSDARG00000059972	raly	82	78.319	ENSCCAG00000024548	RALY	79	75.000	Cebus_capucinus
ENSDARG00000059972	raly	81	78.924	ENSCATG00000031769	RALY	77	74.583	Cercocebus_atys
ENSDARG00000059972	raly	82	79.646	ENSCLAG00000016899	RALY	72	79.646	Chinchilla_lanigera
ENSDARG00000059972	raly	81	78.924	ENSCSAG00000012199	RALY	72	78.319	Chlorocebus_sabaeus
ENSDARG00000059972	raly	78	73.953	ENSCHOG00000000266	RALY	97	67.111	Choloepus_hoffmanni
ENSDARG00000059972	raly	99	74.545	ENSCPBG00000019164	RALY	100	76.692	Chrysemys_picta_bellii
ENSDARG00000059972	raly	78	81.395	ENSCANG00000037952	RALY	76	78.319	Colobus_angolensis_palliatus
ENSDARG00000059972	raly	81	79.372	ENSCGRG00001014652	Raly	75	76.371	Cricetulus_griseus_chok1gshd
ENSDARG00000059972	raly	81	79.372	ENSCGRG00000011726	Raly	75	76.371	Cricetulus_griseus_crigri
ENSDARG00000059972	raly	76	80.905	ENSDNOG00000046782	-	94	67.050	Dasypus_novemcinctus
ENSDARG00000059972	raly	78	81.395	ENSDNOG00000003227	-	99	68.231	Dasypus_novemcinctus
ENSDARG00000059972	raly	81	79.524	ENSDORG00000013400	Raly	99	79.524	Dipodomys_ordii
ENSDARG00000059972	raly	77	71.963	ENSETEG00000012464	-	98	71.963	Echinops_telfairi
ENSDARG00000059972	raly	69	64.062	ENSETEG00000001919	-	63	64.062	Echinops_telfairi
ENSDARG00000059972	raly	81	81.166	ENSEASG00005008501	RALY	81	77.593	Equus_asinus_asinus
ENSDARG00000059972	raly	81	81.166	ENSECAG00000037642	-	81	77.593	Equus_caballus
ENSDARG00000059972	raly	81	81.166	ENSECAG00000012357	RALY	81	77.593	Equus_caballus
ENSDARG00000059972	raly	81	81.166	ENSECAG00000030217	-	81	77.593	Equus_caballus
ENSDARG00000059972	raly	82	65.778	ENSEEUG00000005356	RALY	81	61.633	Erinaceus_europaeus
ENSDARG00000059972	raly	100	76.271	ENSELUG00000011138	raly	100	76.271	Esox_lucius
ENSDARG00000059972	raly	82	80.531	ENSFCAG00000025252	RALY	81	77.083	Felis_catus
ENSDARG00000059972	raly	82	77.876	ENSFDAG00000010175	RALY	100	92.941	Fukomys_damarensis
ENSDARG00000059972	raly	93	74.409	ENSFHEG00000018618	raly	96	74.016	Fundulus_heteroclitus
ENSDARG00000059972	raly	79	63.134	ENSGMOG00000012589	raly	99	63.134	Gadus_morhua
ENSDARG00000059972	raly	99	76.000	ENSGALG00000033696	RALY	99	77.068	Gallus_gallus
ENSDARG00000059972	raly	81	78.733	ENSGACG00000003636	raly	97	70.522	Gasterosteus_aculeatus
ENSDARG00000059972	raly	95	75.564	ENSGAGG00000016266	RALY	83	76.692	Gopherus_agassizii
ENSDARG00000059972	raly	78	81.395	ENSGGOG00000022709	RALY	78	75.210	Gorilla_gorilla
ENSDARG00000059972	raly	77	86.000	ENSHBUG00000021321	raly	100	66.897	Haplochromis_burtoni
ENSDARG00000059972	raly	81	73.333	ENSHGLG00000021175	-	76	70.588	Heterocephalus_glaber_female
ENSDARG00000059972	raly	82	79.204	ENSHGLG00000017779	-	99	78.571	Heterocephalus_glaber_female
ENSDARG00000059972	raly	82	79.204	ENSHGLG00100003933	RALY	92	89.231	Heterocephalus_glaber_male
ENSDARG00000059972	raly	90	56.000	ENSHGLG00100000278	-	99	56.000	Heterocephalus_glaber_male
ENSDARG00000059972	raly	81	62.381	ENSHGLG00100003829	-	94	54.826	Heterocephalus_glaber_male
ENSDARG00000059972	raly	85	57.082	ENSHCOG00000012268	raly	96	57.082	Hippocampus_comes
ENSDARG00000059972	raly	82	79.646	ENSSTOG00000008810	RALY	71	82.791	Ictidomys_tridecemlineatus
ENSDARG00000059972	raly	81	79.048	ENSJJAG00000008473	Raly	92	88.462	Jaculus_jaculus
ENSDARG00000059972	raly	76	83.673	ENSKMAG00000015656	raly	80	83.673	Kryptolebias_marmoratus
ENSDARG00000059972	raly	79	84.862	ENSLBEG00000022656	raly	84	84.862	Labrus_bergylta
ENSDARG00000059972	raly	100	72.954	ENSLACG00000008596	RALY	99	73.310	Latimeria_chalumnae
ENSDARG00000059972	raly	100	84.116	ENSLOCG00000007219	raly	100	84.116	Lepisosteus_oculatus
ENSDARG00000059972	raly	78	83.721	ENSLAFG00000000321	RALY	69	83.721	Loxodonta_africana
ENSDARG00000059972	raly	78	81.395	ENSMFAG00000033131	RALY	78	74.583	Macaca_fascicularis
ENSDARG00000059972	raly	78	81.395	ENSMMUG00000018093	RALY	78	74.583	Macaca_mulatta
ENSDARG00000059972	raly	78	81.395	ENSMNEG00000044988	RALY	78	74.583	Macaca_nemestrina
ENSDARG00000059972	raly	78	81.395	ENSMLEG00000028900	RALY	77	74.583	Mandrillus_leucophaeus
ENSDARG00000059972	raly	78	86.567	ENSMAMG00000012529	raly	83	69.373	Mastacembelus_armatus
ENSDARG00000059972	raly	77	87.374	ENSMZEG00005016550	raly	65	87.374	Maylandia_zebra
ENSDARG00000059972	raly	99	68.456	ENSMGAG00000002214	RALY	98	68.243	Meleagris_gallopavo
ENSDARG00000059972	raly	81	79.048	ENSMAUG00000005739	Raly	99	79.048	Mesocricetus_auratus
ENSDARG00000059972	raly	81	81.166	ENSMICG00000039074	RALY	81	76.667	Microcebus_murinus
ENSDARG00000059972	raly	82	78.761	ENSMOCG00000009450	Raly	72	78.166	Microtus_ochrogaster
ENSDARG00000059972	raly	81	84.234	ENSMMOG00000013788	raly	94	75.581	Mola_mola
ENSDARG00000059972	raly	99	65.141	ENSMODG00000002819	-	98	65.493	Monodelphis_domestica
ENSDARG00000059972	raly	99	71.777	ENSMALG00000007071	raly	74	74.564	Monopterus_albus
ENSDARG00000059972	raly	81	79.048	MGP_CAROLIEiJ_G0024519	Raly	92	90.000	Mus_caroli
ENSDARG00000059972	raly	82	78.319	ENSMUSG00000027593	Raly	92	90.000	Mus_musculus
ENSDARG00000059972	raly	81	79.048	MGP_PahariEiJ_G0025963	Raly	92	90.000	Mus_pahari
ENSDARG00000059972	raly	81	79.048	MGP_SPRETEiJ_G0025441	Raly	92	90.000	Mus_spretus
ENSDARG00000059972	raly	78	83.721	ENSMPUG00000017820	RALY	95	70.036	Mustela_putorius_furo
ENSDARG00000059972	raly	78	84.651	ENSMLUG00000005330	-	90	72.830	Myotis_lucifugus
ENSDARG00000059972	raly	81	72.273	ENSMLUG00000027895	-	92	63.603	Myotis_lucifugus
ENSDARG00000059972	raly	81	79.048	ENSNGAG00000001263	Raly	99	79.048	Nannospalax_galili
ENSDARG00000059972	raly	77	86.500	ENSNBRG00000014761	raly	100	67.241	Neolamprologus_brichardi
ENSDARG00000059972	raly	83	60.606	ENSNLEG00000010031	-	84	60.606	Nomascus_leucogenys
ENSDARG00000059972	raly	81	78.924	ENSOPRG00000008423	RALY	78	75.417	Ochotona_princeps
ENSDARG00000059972	raly	75	72.081	ENSODEG00000012831	-	100	72.081	Octodon_degus
ENSDARG00000059972	raly	66	66.279	ENSODEG00000011160	-	80	61.421	Octodon_degus
ENSDARG00000059972	raly	98	63.509	ENSODEG00000008369	-	95	63.830	Octodon_degus
ENSDARG00000059972	raly	99	71.478	ENSONIG00000004416	raly	100	74.126	Oreochromis_niloticus
ENSDARG00000059972	raly	78	83.256	ENSOCUG00000000477	RALY	64	76.891	Oryctolagus_cuniculus
ENSDARG00000059972	raly	82	77.434	ENSOGAG00000032337	RALY	77	73.750	Otolemur_garnettii
ENSDARG00000059972	raly	78	82.791	ENSOARG00000008957	RALY	79	77.311	Ovis_aries
ENSDARG00000059972	raly	78	81.395	ENSPPAG00000034951	RALY	74	78.319	Pan_paniscus
ENSDARG00000059972	raly	81	81.166	ENSPPRG00000014593	RALY	81	77.083	Panthera_pardus
ENSDARG00000059972	raly	81	81.166	ENSPTIG00000021910	RALY	81	77.083	Panthera_tigris_altaica
ENSDARG00000059972	raly	78	81.395	ENSPTRG00000013410	RALY	74	78.319	Pan_troglodytes
ENSDARG00000059972	raly	78	81.395	ENSPANG00000018093	RALY	73	78.319	Papio_anubis
ENSDARG00000059972	raly	100	81.655	ENSPKIG00000004894	raly	100	81.655	Paramormyrops_kingsleyae
ENSDARG00000059972	raly	87	71.315	ENSPSIG00000017714	RALY	96	67.148	Pelodiscus_sinensis
ENSDARG00000059972	raly	79	79.710	ENSPEMG00000021466	Raly	78	76.018	Peromyscus_maniculatus_bairdii
ENSDARG00000059972	raly	99	68.231	ENSPCIG00000011153	-	99	68.231	Phascolarctos_cinereus
ENSDARG00000059972	raly	78	81.395	ENSPPYG00000010932	RALY	75	78.319	Pongo_abelii
ENSDARG00000059972	raly	82	66.814	ENSPCAG00000016867	RALY	75	66.814	Procavia_capensis
ENSDARG00000059972	raly	81	79.821	ENSPCOG00000016363	RALY	81	76.250	Propithecus_coquereli
ENSDARG00000059972	raly	78	83.256	ENSPVAG00000015827	RALY	82	77.083	Pteropus_vampyrus
ENSDARG00000059972	raly	77	86.364	ENSPNYG00000011247	raly	65	86.364	Pundamilia_nyererei
ENSDARG00000059972	raly	100	86.282	ENSPNAG00000011812	raly	100	86.282	Pygocentrus_nattereri
ENSDARG00000059972	raly	81	78.475	ENSRNOG00000017405	Raly	74	77.293	Rattus_norvegicus
ENSDARG00000059972	raly	78	80.930	ENSRBIG00000030203	RALY	76	75.210	Rhinopithecus_bieti
ENSDARG00000059972	raly	81	78.475	ENSRROG00000038781	RALY	76	75.210	Rhinopithecus_roxellana
ENSDARG00000059972	raly	82	78.319	ENSSBOG00000001418	RALY	73	78.319	Saimiri_boliviensis_boliviensis
ENSDARG00000059972	raly	98	62.238	ENSSHAG00000016830	RALY	98	62.238	Sarcophilus_harrisii
ENSDARG00000059972	raly	95	83.019	ENSSFOG00015012304	raly	100	83.019	Scleropages_formosus
ENSDARG00000059972	raly	88	79.918	ENSSMAG00000001107	raly	91	75.373	Scophthalmus_maximus
ENSDARG00000059972	raly	83	84.848	ENSSDUG00000002411	raly	97	73.264	Seriola_dumerili
ENSDARG00000059972	raly	85	84.188	ENSSLDG00000017872	raly	97	72.822	Seriola_lalandi_dorsalis
ENSDARG00000059972	raly	76	66.825	ENSSARG00000002763	-	69	66.825	Sorex_araneus
ENSDARG00000059972	raly	95	77.068	ENSSPUG00000006251	RALY	98	77.068	Sphenodon_punctatus
ENSDARG00000059972	raly	87	72.083	ENSSPAG00000022480	-	92	72.083	Stegastes_partitus
ENSDARG00000059972	raly	81	81.166	ENSSSCG00000007275	RALY	68	81.166	Sus_scrofa
ENSDARG00000059972	raly	78	86.854	ENSTGUG00000003715	RALY	99	86.854	Taeniopygia_guttata
ENSDARG00000059972	raly	82	62.832	ENSTBEG00000009812	RALY	76	61.181	Tupaia_belangeri
ENSDARG00000059972	raly	77	83.178	ENSTTRG00000006590	RALY	71	83.178	Tursiops_truncatus
ENSDARG00000059972	raly	78	83.256	ENSUAMG00000006993	RALY	97	68.592	Ursus_americanus
ENSDARG00000059972	raly	78	83.256	ENSUMAG00000024106	RALY	82	77.083	Ursus_maritimus
ENSDARG00000059972	raly	62	76.879	ENSVPAG00000000373	RALY	58	76.879	Vicugna_pacos
ENSDARG00000059972	raly	78	83.256	ENSVVUG00000004546	RALY	82	77.083	Vulpes_vulpes
ENSDARG00000059972	raly	96	67.021	ENSXETG00000019514	raly	98	66.312	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component