EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060027 (Gene tree)
Gene ID: 557585
Gene Symbol: nom1
Alias: si:ch211-266o5.1
Full Name: nucleolar protein with MIF4G domain 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 13063 bases
Position: chr7:40644769-40657831
Accession: ZDB-GENE-060503-321
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000078588	MA3	PF02847.17	8.5e-23	1	1
ENSDARP00000122404	MA3	PF02847.17	1.6e-22	1	1
ENSDARP00000122404	MIF4G	PF02854.19	6.7e-20	1	1
ENSDARP00000078588	MIF4G	PF02854.19	2.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000084153	-	1987	-	ENSDARP00000078588	487 (aa)	-	Q1LY16
ENSDART00000142315	-	2832	-	ENSDARP00000122404	835 (aa)	-	Q1LY17
ENSDART00000173839	-	445	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000060027's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060027's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060027	nom1	99	67.983	ENSG00000146909	NOM1	80	59.855	Homo_sapiens
ENSDARG00000060027	nom1	100	77.618	ENSAPOG00000012073	nom1	100	64.055	Acanthochromis_polyacanthus
ENSDARG00000060027	nom1	99	66.874	ENSAMEG00000001412	NOM1	96	58.993	Ailuropoda_melanoleuca
ENSDARG00000060027	nom1	100	77.413	ENSACIG00000018050	nom1	98	77.714	Amphilophus_citrinellus
ENSDARG00000060027	nom1	100	76.591	ENSAOCG00000006229	nom1	100	63.573	Amphiprion_ocellaris
ENSDARG00000060027	nom1	100	76.591	ENSAPEG00000015994	nom1	100	62.718	Amphiprion_percula
ENSDARG00000060027	nom1	100	76.181	ENSATEG00000005405	nom1	100	63.452	Anabas_testudineus
ENSDARG00000060027	nom1	99	66.667	ENSAPLG00000006585	NOM1	98	57.377	Anas_platyrhynchos
ENSDARG00000060027	nom1	100	68.033	ENSACAG00000011192	NOM1	62	66.729	Anolis_carolinensis
ENSDARG00000060027	nom1	100	77.002	ENSACLG00000000033	nom1	100	64.304	Astatotilapia_calliptera
ENSDARG00000060027	nom1	100	77.254	ENSAMXG00000041486	nom1	100	60.249	Astyanax_mexicanus
ENSDARG00000060027	nom1	99	67.562	ENSBTAG00000016435	NOM1	61	67.429	Bos_taurus
ENSDARG00000060027	nom1	99	68.116	ENSCJAG00000004336	NOM1	96	53.647	Callithrix_jacchus
ENSDARG00000060027	nom1	99	67.909	ENSCAFG00020005121	NOM1	96	53.081	Canis_lupus_dingo
ENSDARG00000060027	nom1	99	67.355	ENSCHIG00000020102	NOM1	96	52.600	Capra_hircus
ENSDARG00000060027	nom1	99	67.983	ENSTSYG00000000227	NOM1	97	54.028	Carlito_syrichta
ENSDARG00000060027	nom1	99	68.944	ENSCAPG00000016273	NOM1	99	68.199	Cavia_aperea
ENSDARG00000060027	nom1	99	64.389	ENSCPOG00000025538	NOM1	97	51.957	Cavia_porcellus
ENSDARG00000060027	nom1	89	68.409	ENSCCAG00000014944	NOM1	99	68.750	Cebus_capucinus
ENSDARG00000060027	nom1	99	67.288	ENSCLAG00000000267	NOM1	82	59.227	Chinchilla_lanigera
ENSDARG00000060027	nom1	100	68.583	ENSCPBG00000018215	NOM1	60	67.742	Chrysemys_picta_bellii
ENSDARG00000060027	nom1	98	41.336	ENSCING00000005248	-	70	41.603	Ciona_intestinalis
ENSDARG00000060027	nom1	99	67.568	ENSCANG00000041984	NOM1	89	66.987	Colobus_angolensis_palliatus
ENSDARG00000060027	nom1	99	66.320	ENSCGRG00001020293	Nom1	98	51.977	Cricetulus_griseus_chok1gshd
ENSDARG00000060027	nom1	99	66.320	ENSCGRG00000005405	Nom1	97	65.962	Cricetulus_griseus_crigri
ENSDARG00000060027	nom1	93	75.110	ENSCSEG00000000932	nom1	96	61.816	Cynoglossus_semilaevis
ENSDARG00000060027	nom1	100	75.770	ENSCVAG00000007562	nom1	99	60.116	Cyprinodon_variegatus
ENSDARG00000060027	nom1	99	55.441	ENSDORG00000015682	Nom1	99	49.570	Dipodomys_ordii
ENSDARG00000060027	nom1	92	38.344	FBgn0035336	CG9004	84	34.297	Drosophila_melanogaster
ENSDARG00000060027	nom1	87	57.210	ENSETEG00000003104	NOM1	90	57.210	Echinops_telfairi
ENSDARG00000060027	nom1	89	49.886	ENSEBUG00000010077	nom1	96	50.114	Eptatretus_burgeri
ENSDARG00000060027	nom1	99	68.191	ENSEASG00005001489	NOM1	96	53.286	Equus_asinus_asinus
ENSDARG00000060027	nom1	99	68.191	ENSECAG00000007596	NOM1	90	53.756	Equus_caballus
ENSDARG00000060027	nom1	100	77.207	ENSELUG00000006266	nom1	62	77.040	Esox_lucius
ENSDARG00000060027	nom1	99	67.983	ENSFCAG00000006467	NOM1	83	59.281	Felis_catus
ENSDARG00000060027	nom1	100	66.119	ENSFALG00000006904	NOM1	99	57.752	Ficedula_albicollis
ENSDARG00000060027	nom1	99	66.667	ENSFDAG00000016241	NOM1	63	65.966	Fukomys_damarensis
ENSDARG00000060027	nom1	100	75.359	ENSFHEG00000015974	nom1	99	63.101	Fundulus_heteroclitus
ENSDARG00000060027	nom1	100	69.610	ENSGMOG00000005129	nom1	67	69.025	Gadus_morhua
ENSDARG00000060027	nom1	100	65.503	ENSGALG00000006437	NOM1	85	54.497	Gallus_gallus
ENSDARG00000060027	nom1	100	74.538	ENSGAFG00000003211	nom1	99	62.679	Gambusia_affinis
ENSDARG00000060027	nom1	100	68.789	ENSGAGG00000014347	NOM1	64	67.932	Gopherus_agassizii
ENSDARG00000060027	nom1	99	67.568	ENSGGOG00000010920	NOM1	56	66.987	Gorilla_gorilla
ENSDARG00000060027	nom1	100	77.207	ENSHBUG00000014616	nom1	100	62.116	Haplochromis_burtoni
ENSDARG00000060027	nom1	99	68.944	ENSHGLG00000007392	NOM1	98	53.341	Heterocephalus_glaber_female
ENSDARG00000060027	nom1	99	68.944	ENSHGLG00100014407	NOM1	97	69.745	Heterocephalus_glaber_male
ENSDARG00000060027	nom1	67	70.213	ENSHCOG00000011999	-	87	70.213	Hippocampus_comes
ENSDARG00000060027	nom1	100	72.485	ENSIPUG00000013980	nom1	100	61.737	Ictalurus_punctatus
ENSDARG00000060027	nom1	99	67.702	ENSSTOG00000031736	NOM1	91	67.304	Ictidomys_tridecemlineatus
ENSDARG00000060027	nom1	99	66.874	ENSJJAG00000011716	Nom1	98	67.008	Jaculus_jaculus
ENSDARG00000060027	nom1	100	75.000	ENSLBEG00000009252	nom1	62	75.236	Labrus_bergylta
ENSDARG00000060027	nom1	100	68.583	ENSLACG00000011777	NOM1	64	67.608	Latimeria_chalumnae
ENSDARG00000060027	nom1	100	73.922	ENSLOCG00000012452	nom1	67	73.048	Lepisosteus_oculatus
ENSDARG00000060027	nom1	96	63.539	ENSLAFG00000007119	NOM1	90	50.322	Loxodonta_africana
ENSDARG00000060027	nom1	99	62.940	ENSMMUG00000039033	NOM1	96	51.930	Macaca_mulatta
ENSDARG00000060027	nom1	99	67.983	ENSMLEG00000037062	NOM1	98	67.562	Mandrillus_leucophaeus
ENSDARG00000060027	nom1	100	76.591	ENSMAMG00000004118	nom1	58	76.591	Mastacembelus_armatus
ENSDARG00000060027	nom1	100	77.002	ENSMZEG00005000384	nom1	63	76.894	Maylandia_zebra
ENSDARG00000060027	nom1	99	66.255	ENSMGAG00000005051	NOM1	99	57.483	Meleagris_gallopavo
ENSDARG00000060027	nom1	99	66.944	ENSMAUG00000017988	Nom1	97	53.333	Mesocricetus_auratus
ENSDARG00000060027	nom1	99	67.360	ENSMICG00000017531	NOM1	97	52.990	Microcebus_murinus
ENSDARG00000060027	nom1	99	66.112	ENSMOCG00000015962	Nom1	61	66.027	Microtus_ochrogaster
ENSDARG00000060027	nom1	100	68.787	ENSMMOG00000004419	nom1	99	59.721	Mola_mola
ENSDARG00000060027	nom1	99	69.854	ENSMODG00000005177	NOM1	81	61.650	Monodelphis_domestica
ENSDARG00000060027	nom1	90	79.318	ENSMALG00000008800	nom1	99	63.158	Monopterus_albus
ENSDARG00000060027	nom1	99	65.489	MGP_CAROLIEiJ_G0027043	Nom1	95	52.878	Mus_caroli
ENSDARG00000060027	nom1	99	65.489	ENSMUSG00000001569	Nom1	95	52.878	Mus_musculus
ENSDARG00000060027	nom1	99	65.489	MGP_SPRETEiJ_G0028039	Nom1	95	52.638	Mus_spretus
ENSDARG00000060027	nom1	99	65.281	ENSMPUG00000009745	NOM1	99	56.936	Mustela_putorius_furo
ENSDARG00000060027	nom1	99	68.672	ENSMLUG00000009129	NOM1	87	66.920	Myotis_lucifugus
ENSDARG00000060027	nom1	100	77.823	ENSNBRG00000016429	nom1	95	77.401	Neolamprologus_brichardi
ENSDARG00000060027	nom1	99	66.320	ENSNLEG00000000238	NOM1	60	65.451	Nomascus_leucogenys
ENSDARG00000060027	nom1	79	74.272	ENSMEUG00000001108	NOM1	71	56.699	Notamacropus_eugenii
ENSDARG00000060027	nom1	78	58.635	ENSOPRG00000014676	NOM1	70	48.847	Ochotona_princeps
ENSDARG00000060027	nom1	99	66.874	ENSODEG00000009399	NOM1	98	60.204	Octodon_degus
ENSDARG00000060027	nom1	100	77.207	ENSONIG00000005958	nom1	67	77.273	Oreochromis_niloticus
ENSDARG00000060027	nom1	95	66.239	ENSOANG00000006139	-	97	66.239	Ornithorhynchus_anatinus
ENSDARG00000060027	nom1	99	67.842	ENSOCUG00000004071	-	96	53.974	Oryctolagus_cuniculus
ENSDARG00000060027	nom1	99	54.678	ENSOCUG00000021448	-	80	59.420	Oryctolagus_cuniculus
ENSDARG00000060027	nom1	97	75.738	ENSORLG00000010541	nom1	100	62.603	Oryzias_latipes
ENSDARG00000060027	nom1	97	75.738	ENSORLG00020010789	nom1	99	63.974	Oryzias_latipes_hni
ENSDARG00000060027	nom1	100	75.205	ENSORLG00015010475	nom1	100	62.763	Oryzias_latipes_hsok
ENSDARG00000060027	nom1	97	74.841	ENSOMEG00000004219	nom1	100	62.456	Oryzias_melastigma
ENSDARG00000060027	nom1	99	66.944	ENSOGAG00000001124	NOM1	85	66.667	Otolemur_garnettii
ENSDARG00000060027	nom1	99	67.562	ENSOARG00000007261	NOM1	94	58.239	Ovis_aries
ENSDARG00000060027	nom1	99	67.360	ENSPPAG00000041374	NOM1	80	59.710	Pan_paniscus
ENSDARG00000060027	nom1	99	67.635	ENSPTIG00000013532	NOM1	96	58.169	Panthera_tigris_altaica
ENSDARG00000060027	nom1	99	67.360	ENSPTRG00000019917	NOM1	60	67.179	Pan_troglodytes
ENSDARG00000060027	nom1	99	67.983	ENSPANG00000007605	NOM1	96	54.450	Papio_anubis
ENSDARG00000060027	nom1	100	68.789	ENSPKIG00000005825	nom1	100	57.075	Paramormyrops_kingsleyae
ENSDARG00000060027	nom1	100	68.378	ENSPSIG00000017848	NOM1	88	67.675	Pelodiscus_sinensis
ENSDARG00000060027	nom1	100	75.205	ENSPMGG00000002577	nom1	100	61.217	Periophthalmus_magnuspinnatus
ENSDARG00000060027	nom1	99	66.736	ENSPEMG00000024180	Nom1	95	52.725	Peromyscus_maniculatus_bairdii
ENSDARG00000060027	nom1	55	56.184	ENSPMAG00000002136	-	97	56.184	Petromyzon_marinus
ENSDARG00000060027	nom1	99	68.323	ENSPCIG00000027941	NOM1	78	58.741	Phascolarctos_cinereus
ENSDARG00000060027	nom1	100	74.949	ENSPFOG00000015771	nom1	99	62.322	Poecilia_formosa
ENSDARG00000060027	nom1	100	74.538	ENSPLAG00000007856	nom1	99	60.471	Poecilia_latipinna
ENSDARG00000060027	nom1	100	74.538	ENSPMEG00000014155	nom1	99	60.660	Poecilia_mexicana
ENSDARG00000060027	nom1	100	74.333	ENSPREG00000008850	nom1	99	62.201	Poecilia_reticulata
ENSDARG00000060027	nom1	99	61.203	ENSPPYG00000018222	NOM1	96	49.531	Pongo_abelii
ENSDARG00000060027	nom1	87	60.520	ENSPCAG00000000440	NOM1	84	60.748	Procavia_capensis
ENSDARG00000060027	nom1	99	66.944	ENSPCOG00000015222	NOM1	98	65.835	Propithecus_coquereli
ENSDARG00000060027	nom1	99	67.220	ENSPVAG00000014760	NOM1	60	66.092	Pteropus_vampyrus
ENSDARG00000060027	nom1	100	75.975	ENSPNYG00000006975	nom1	95	75.947	Pundamilia_nyererei
ENSDARG00000060027	nom1	100	77.002	ENSPNAG00000011085	nom1	100	61.030	Pygocentrus_nattereri
ENSDARG00000060027	nom1	99	61.954	ENSRNOG00000048969	AABR07059041.1	99	50.672	Rattus_norvegicus
ENSDARG00000060027	nom1	99	67.568	ENSRBIG00000037042	NOM1	96	54.127	Rhinopithecus_bieti
ENSDARG00000060027	nom1	99	67.152	ENSRROG00000037293	NOM1	96	53.656	Rhinopithecus_roxellana
ENSDARG00000060027	nom1	74	31.525	YLR336C	-	54	30.321	Saccharomyces_cerevisiae
ENSDARG00000060027	nom1	99	69.358	ENSSHAG00000017998	-	99	58.462	Sarcophilus_harrisii
ENSDARG00000060027	nom1	77	63.807	ENSSHAG00000002835	-	99	63.221	Sarcophilus_harrisii
ENSDARG00000060027	nom1	100	69.610	ENSSFOG00015003196	nom1	100	69.610	Scleropages_formosus
ENSDARG00000060027	nom1	100	76.386	ENSSMAG00000011047	nom1	100	62.850	Scophthalmus_maximus
ENSDARG00000060027	nom1	100	76.181	ENSSDUG00000006834	nom1	62	76.136	Seriola_dumerili
ENSDARG00000060027	nom1	100	75.975	ENSSLDG00000021812	nom1	63	75.947	Seriola_lalandi_dorsalis
ENSDARG00000060027	nom1	100	54.970	ENSSPUG00000002556	NOM1	90	67.610	Sphenodon_punctatus
ENSDARG00000060027	nom1	100	76.797	ENSSPAG00000000953	nom1	100	62.357	Stegastes_partitus
ENSDARG00000060027	nom1	100	66.324	ENSTGUG00000000702	-	75	65.465	Taeniopygia_guttata
ENSDARG00000060027	nom1	62	64.474	ENSTGUG00000016587	-	100	63.265	Taeniopygia_guttata
ENSDARG00000060027	nom1	100	73.717	ENSTRUG00000010239	nom1	63	73.295	Takifugu_rubripes
ENSDARG00000060027	nom1	100	70.697	ENSTNIG00000012783	nom1	100	60.656	Tetraodon_nigroviridis
ENSDARG00000060027	nom1	97	66.526	ENSTTRG00000009691	NOM1	80	58.798	Tursiops_truncatus
ENSDARG00000060027	nom1	99	66.944	ENSUAMG00000025450	NOM1	97	51.916	Ursus_americanus
ENSDARG00000060027	nom1	99	66.944	ENSUMAG00000014275	NOM1	96	58.636	Ursus_maritimus
ENSDARG00000060027	nom1	99	67.775	ENSVVUG00000002608	NOM1	96	68.203	Vulpes_vulpes
ENSDARG00000060027	nom1	100	65.298	ENSXETG00000021611	nom1	82	70.388	Xenopus_tropicalis
ENSDARG00000060027	nom1	100	75.565	ENSXMAG00000002451	nom1	100	62.605	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	24967912.	IMP	Process
GO:0042274	ribosomal small subunit biogenesis	21873635.	IBA	Process