EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060030 (Gene tree)
Gene ID: 556535
Gene Symbol: setd1a
Alias: -
Full Name: SET domain containing 1A
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 28422 bases
Position: chr3:32714157-32742578
Accession: ZDB-GENE-080521-4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000108328	RRM_1	PF00076.22	0.00018	1	1
ENSDARP00000115396	RRM_1	PF00076.22	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000125022	-	6762	-	ENSDARP00000108328	2253 (aa)	-	E9QGQ0
ENSDART00000131774	-	8708	XM_021474302	ENSDARP00000115396	2253 (aa)	XP_021329977	E9QGQ0

Gene Model

Click here to download ENSDARG00000060030's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060030's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060030	setd1a	78	91.045	ENSAPOG00000018002	setd1a	79	89.474	Acanthochromis_polyacanthus
ENSDARG00000060030	setd1a	75	94.000	ENSACIG00000007144	setd1a	92	94.000	Amphilophus_citrinellus
ENSDARG00000060030	setd1a	59	79.479	ENSACAG00000007606	-	60	77.812	Anolis_carolinensis
ENSDARG00000060030	setd1a	54	77.090	ENSANAG00000021698	-	59	77.090	Aotus_nancymaae
ENSDARG00000060030	setd1a	100	71.367	ENSAMXG00000009497	setd1a	100	71.275	Astyanax_mexicanus
ENSDARG00000060030	setd1a	50	81.818	ENSCAPG00000006491	-	59	79.872	Cavia_aperea
ENSDARG00000060030	setd1a	100	59.283	ENSCVAG00000011672	setd1a	100	59.619	Cyprinodon_variegatus
ENSDARG00000060030	setd1a	51	62.426	ENSELUG00000020261	setd1a	52	60.390	Esox_lucius
ENSDARG00000060030	setd1a	94	67.078	ENSFHEG00000023258	setd1a	90	72.836	Fundulus_heteroclitus
ENSDARG00000060030	setd1a	63	83.387	ENSGAFG00000011698	setd1a	84	83.387	Gambusia_affinis
ENSDARG00000060030	setd1a	70	83.333	ENSGACG00000013688	setd1a	85	77.904	Gasterosteus_aculeatus
ENSDARG00000060030	setd1a	52	81.757	ENSHGLG00000014238	-	63	81.395	Heterocephalus_glaber_female
ENSDARG00000060030	setd1a	73	76.860	ENSHCOG00000003119	setd1a	98	81.682	Hippocampus_comes
ENSDARG00000060030	setd1a	100	66.912	ENSIPUG00000007413	setd1a	100	68.243	Ictalurus_punctatus
ENSDARG00000060030	setd1a	53	81.419	ENSMNEG00000032572	-	62	80.858	Macaca_nemestrina
ENSDARG00000060030	setd1a	69	82.677	ENSMAMG00000021851	setd1a	89	81.641	Mastacembelus_armatus
ENSDARG00000060030	setd1a	67	78.237	ENSMMOG00000016992	setd1a	97	84.384	Mola_mola
ENSDARG00000060030	setd1a	52	81.224	ENSMODG00000001726	-	56	80.800	Monodelphis_domestica
ENSDARG00000060030	setd1a	72	59.497	ENSMALG00000007401	setd1a	98	57.479	Monopterus_albus
ENSDARG00000060030	setd1a	52	82.770	ENSMUSG00000042308	Setd1a	100	70.558	Mus_musculus
ENSDARG00000060030	setd1a	52	82.770	MGP_SPRETEiJ_G0031633	Setd1a	100	70.051	Mus_spretus
ENSDARG00000060030	setd1a	53	81.419	ENSNLEG00000016072	-	62	78.662	Nomascus_leucogenys
ENSDARG00000060030	setd1a	50	83.162	ENSMEUG00000003396	-	58	82.392	Notamacropus_eugenii
ENSDARG00000060030	setd1a	50	82.095	ENSOPRG00000016034	-	58	80.128	Ochotona_princeps
ENSDARG00000060030	setd1a	53	66.450	ENSOGAG00000028006	-	55	66.450	Otolemur_garnettii
ENSDARG00000060030	setd1a	50	79.070	ENSPCIG00000016725	-	58	78.457	Phascolarctos_cinereus
ENSDARG00000060030	setd1a	73	58.535	ENSPFOG00000013669	setd1a	100	57.765	Poecilia_formosa
ENSDARG00000060030	setd1a	100	72.896	ENSPNAG00000019165	setd1a	100	72.888	Pygocentrus_nattereri
ENSDARG00000060030	setd1a	57	82.192	ENSRBIG00000033047	-	65	82.192	Rhinopithecus_bieti
ENSDARG00000060030	setd1a	52	82.192	ENSRROG00000040062	-	65	82.192	Rhinopithecus_roxellana
ENSDARG00000060030	setd1a	68	88.000	ENSTNIG00000014930	setd1a	87	76.238	Tetraodon_nigroviridis
ENSDARG00000060030	setd1a	57	67.265	ENSXCOG00000017585	setd1a	100	56.969	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0042800	histone methyltransferase activity (H3-K4 specific)	-	IEA	Function
GO:0048188	Set1C/COMPASS complex	-	IEA	Component