EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060065 (Gene tree)
Gene ID: 570789
Gene Symbol: ubap2b
Alias: wu:fb19h07|zgc:158399
Full Name: ubiquitin associated protein 2b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 34910
Position: chr8: 45293743-45328652
Accession: ZDB-GENE-070209-122
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000191527	-	3774	-	ENSDARP00000145520	1046 (aa)	-	A2RUY5
ENSDART00000136234	-	3853	XM_005167271	ENSDARP00000120289	1046 (aa)	XP_005167328	A2RUY5
ENSDART00000137104	-	345	-	ENSDARP00000120883	78 (aa)	-	B8JHU9

Gene Model

Click here to download ENSDARG00000060065's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060065's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060065	ubap2b	79	54.688	ENSG00000137073	UBAP2	94	55.587	Homo_sapiens
ENSDARG00000060065	ubap2b	82	56.923	ENSG00000143569	UBAP2L	96	48.837	Homo_sapiens
ENSDARG00000060065	ubap2b	82	56.923	ENSMUSG00000042520	Ubap2l	100	63.855	Mus_musculus
ENSDARG00000060065	ubap2b	79	56.250	ENSMUSG00000028433	Ubap2	65	63.736	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component