EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060192 (Gene tree)
Gene ID: 767786
Gene Symbol: rpusd1
Alias: fe26f08|wu:fe26f08|zgc:153465
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7412 bases
Position: chr3:35542067-35549478
Accession: ZDB-GENE-060929-444
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000078984	PseudoU_synth_2	PF00849.22	1e-26	1	1
ENSDARP00000113540	PseudoU_synth_2	PF00849.22	1e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000146529	-	1714	XM_017354591	ENSDARP00000113540	293 (aa)	XP_017210080	F1RAY7
ENSDART00000084549	-	1598	-	ENSDARP00000078984	293 (aa)	-	F1RAY7

Gene Model

Click here to download ENSDARG00000060192's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060192's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060192	rpusd1	100	58.466	ENSG00000007376	RPUSD1	100	67.857	Homo_sapiens
ENSDARG00000060192	rpusd1	99	70.100	ENSAPOG00000022221	rpusd1	98	71.429	Acanthochromis_polyacanthus
ENSDARG00000060192	rpusd1	100	63.333	ENSAMEG00000007461	RPUSD1	99	63.333	Ailuropoda_melanoleuca
ENSDARG00000060192	rpusd1	99	68.404	ENSACIG00000015863	rpusd1	98	69.836	Amphilophus_citrinellus
ENSDARG00000060192	rpusd1	99	68.301	ENSAOCG00000021975	rpusd1	95	70.395	Amphiprion_ocellaris
ENSDARG00000060192	rpusd1	99	68.627	ENSAPEG00000001316	rpusd1	95	70.724	Amphiprion_percula
ENSDARG00000060192	rpusd1	82	78.838	ENSATEG00000002984	rpusd1	98	68.954	Anabas_testudineus
ENSDARG00000060192	rpusd1	77	62.185	ENSAPLG00000012316	RPUSD1	98	62.185	Anas_platyrhynchos
ENSDARG00000060192	rpusd1	100	69.103	ENSACAG00000008953	RPUSD1	100	69.103	Anolis_carolinensis
ENSDARG00000060192	rpusd1	100	59.807	ENSANAG00000024709	RPUSD1	99	59.223	Aotus_nancymaae
ENSDARG00000060192	rpusd1	99	67.320	ENSACLG00000013692	rpusd1	98	70.588	Astatotilapia_calliptera
ENSDARG00000060192	rpusd1	100	73.220	ENSAMXG00000019802	rpusd1	100	73.220	Astyanax_mexicanus
ENSDARG00000060192	rpusd1	100	63.312	ENSBTAG00000000179	RPUSD1	99	64.262	Bos_taurus
ENSDARG00000060192	rpusd1	100	59.425	ENSCJAG00000012253	RPUSD1	99	58.900	Callithrix_jacchus
ENSDARG00000060192	rpusd1	100	61.238	ENSCAFG00000019614	RPUSD1	99	63.000	Canis_familiaris
ENSDARG00000060192	rpusd1	100	61.238	ENSCAFG00020008891	RPUSD1	99	63.000	Canis_lupus_dingo
ENSDARG00000060192	rpusd1	100	63.312	ENSCHIG00000012872	RPUSD1	99	64.262	Capra_hircus
ENSDARG00000060192	rpusd1	100	59.866	ENSTSYG00000036934	RPUSD1	89	71.552	Carlito_syrichta
ENSDARG00000060192	rpusd1	100	61.184	ENSCAPG00000014219	RPUSD1	99	61.184	Cavia_aperea
ENSDARG00000060192	rpusd1	100	61.184	ENSCPOG00000034604	RPUSD1	99	61.184	Cavia_porcellus
ENSDARG00000060192	rpusd1	100	59.677	ENSCCAG00000034385	RPUSD1	99	59.871	Cebus_capucinus
ENSDARG00000060192	rpusd1	100	58.974	ENSCATG00000042983	RPUSD1	89	72.414	Cercocebus_atys
ENSDARG00000060192	rpusd1	100	60.855	ENSCLAG00000013966	RPUSD1	99	60.855	Chinchilla_lanigera
ENSDARG00000060192	rpusd1	100	58.654	ENSCSAG00000012121	RPUSD1	99	58.576	Chlorocebus_sabaeus
ENSDARG00000060192	rpusd1	99	66.887	ENSCPBG00000021101	RPUSD1	99	66.887	Chrysemys_picta_bellii
ENSDARG00000060192	rpusd1	93	62.182	ENSCANG00000028576	RPUSD1	89	72.414	Colobus_angolensis_palliatus
ENSDARG00000060192	rpusd1	100	63.000	ENSCGRG00001014253	Rpusd1	99	63.000	Cricetulus_griseus_chok1gshd
ENSDARG00000060192	rpusd1	100	63.000	ENSCGRG00000017995	Rpusd1	99	63.000	Cricetulus_griseus_crigri
ENSDARG00000060192	rpusd1	100	70.270	ENSCSEG00000018512	rpusd1	100	70.270	Cynoglossus_semilaevis
ENSDARG00000060192	rpusd1	99	71.572	ENSCVAG00000022746	rpusd1	98	71.572	Cyprinodon_variegatus
ENSDARG00000060192	rpusd1	100	60.328	ENSDNOG00000003721	RPUSD1	99	60.984	Dasypus_novemcinctus
ENSDARG00000060192	rpusd1	100	61.000	ENSDORG00000026656	Rpusd1	99	61.462	Dipodomys_ordii
ENSDARG00000060192	rpusd1	98	48.039	ENSEBUG00000008767	rpusd1	93	48.039	Eptatretus_burgeri
ENSDARG00000060192	rpusd1	100	60.191	ENSEASG00005018421	RPUSD1	75	60.383	Equus_asinus_asinus
ENSDARG00000060192	rpusd1	99	66.230	ENSELUG00000014307	rpusd1	88	66.118	Esox_lucius
ENSDARG00000060192	rpusd1	100	62.333	ENSFCAG00000010359	RPUSD1	99	62.333	Felis_catus
ENSDARG00000060192	rpusd1	100	69.637	ENSFALG00000003211	RPUSD1	100	69.637	Ficedula_albicollis
ENSDARG00000060192	rpusd1	100	60.396	ENSFDAG00000013398	RPUSD1	99	60.396	Fukomys_damarensis
ENSDARG00000060192	rpusd1	99	69.205	ENSFHEG00000004736	rpusd1	98	70.530	Fundulus_heteroclitus
ENSDARG00000060192	rpusd1	99	63.934	ENSGMOG00000010756	rpusd1	99	65.574	Gadus_morhua
ENSDARG00000060192	rpusd1	100	67.987	ENSGALG00000005315	RPUSD1	100	67.987	Gallus_gallus
ENSDARG00000060192	rpusd1	99	70.234	ENSGAFG00000009886	rpusd1	98	70.234	Gambusia_affinis
ENSDARG00000060192	rpusd1	98	69.205	ENSGACG00000014276	rpusd1	98	71.192	Gasterosteus_aculeatus
ENSDARG00000060192	rpusd1	99	65.894	ENSGAGG00000004181	RPUSD1	99	65.894	Gopherus_agassizii
ENSDARG00000060192	rpusd1	100	59.105	ENSGGOG00000013997	RPUSD1	89	72.414	Gorilla_gorilla
ENSDARG00000060192	rpusd1	99	67.647	ENSHBUG00000023728	rpusd1	98	70.915	Haplochromis_burtoni
ENSDARG00000060192	rpusd1	100	59.486	ENSHGLG00000002595	RPUSD1	99	61.056	Heterocephalus_glaber_female
ENSDARG00000060192	rpusd1	100	59.486	ENSHGLG00100014303	RPUSD1	99	61.056	Heterocephalus_glaber_male
ENSDARG00000060192	rpusd1	99	70.345	ENSHCOG00000002390	rpusd1	99	70.345	Hippocampus_comes
ENSDARG00000060192	rpusd1	99	71.096	ENSIPUG00000001570	rpusd1	99	71.429	Ictalurus_punctatus
ENSDARG00000060192	rpusd1	100	60.855	ENSSTOG00000004276	RPUSD1	99	60.855	Ictidomys_tridecemlineatus
ENSDARG00000060192	rpusd1	100	61.462	ENSJJAG00000015696	Rpusd1	99	61.462	Jaculus_jaculus
ENSDARG00000060192	rpusd1	99	68.896	ENSKMAG00000017287	rpusd1	98	68.896	Kryptolebias_marmoratus
ENSDARG00000060192	rpusd1	99	67.105	ENSLBEG00000022502	rpusd1	98	68.092	Labrus_bergylta
ENSDARG00000060192	rpusd1	99	67.105	ENSLBEG00000013354	RPUSD1	98	68.092	Labrus_bergylta
ENSDARG00000060192	rpusd1	99	68.000	ENSLACG00000008869	RPUSD1	99	68.000	Latimeria_chalumnae
ENSDARG00000060192	rpusd1	73	85.116	ENSLOCG00000005682	rpusd1	99	85.116	Lepisosteus_oculatus
ENSDARG00000060192	rpusd1	100	60.667	ENSLAFG00000002115	RPUSD1	99	60.667	Loxodonta_africana
ENSDARG00000060192	rpusd1	100	58.654	ENSMFAG00000003961	RPUSD1	89	72.414	Macaca_fascicularis
ENSDARG00000060192	rpusd1	100	58.654	ENSMMUG00000000842	RPUSD1	89	72.414	Macaca_mulatta
ENSDARG00000060192	rpusd1	100	58.654	ENSMNEG00000042712	RPUSD1	89	72.414	Macaca_nemestrina
ENSDARG00000060192	rpusd1	100	58.654	ENSMLEG00000030591	RPUSD1	89	72.414	Mandrillus_leucophaeus
ENSDARG00000060192	rpusd1	99	69.180	ENSMAMG00000004735	rpusd1	98	69.508	Mastacembelus_armatus
ENSDARG00000060192	rpusd1	99	67.320	ENSMZEG00005003214	rpusd1	98	70.588	Maylandia_zebra
ENSDARG00000060192	rpusd1	99	67.224	ENSMGAG00000005447	RPUSD1	100	67.224	Meleagris_gallopavo
ENSDARG00000060192	rpusd1	87	59.690	ENSMAUG00000019998	Rpusd1	98	59.690	Mesocricetus_auratus
ENSDARG00000060192	rpusd1	100	58.654	ENSMICG00000017561	RPUSD1	100	62.500	Microcebus_murinus
ENSDARG00000060192	rpusd1	100	62.706	ENSMOCG00000014082	Rpusd1	99	62.706	Microtus_ochrogaster
ENSDARG00000060192	rpusd1	99	70.447	ENSMMOG00000012569	rpusd1	99	70.790	Mola_mola
ENSDARG00000060192	rpusd1	100	65.909	ENSMODG00000016882	RPUSD1	99	66.234	Monodelphis_domestica
ENSDARG00000060192	rpusd1	99	68.404	ENSMALG00000017818	rpusd1	98	68.852	Monopterus_albus
ENSDARG00000060192	rpusd1	100	62.092	MGP_CAROLIEiJ_G0021244	Rpusd1	99	63.036	Mus_caroli
ENSDARG00000060192	rpusd1	100	62.092	ENSMUSG00000041199	Rpusd1	99	62.706	Mus_musculus
ENSDARG00000060192	rpusd1	100	61.639	MGP_PahariEiJ_G0023562	Rpusd1	99	61.967	Mus_pahari
ENSDARG00000060192	rpusd1	100	62.092	MGP_SPRETEiJ_G0022155	Rpusd1	99	62.706	Mus_spretus
ENSDARG00000060192	rpusd1	100	61.538	ENSMPUG00000015897	RPUSD1	99	61.667	Mustela_putorius_furo
ENSDARG00000060192	rpusd1	100	61.039	ENSMLUG00000001089	RPUSD1	99	61.039	Myotis_lucifugus
ENSDARG00000060192	rpusd1	100	61.438	ENSNGAG00000003595	Rpusd1	99	61.842	Nannospalax_galili
ENSDARG00000060192	rpusd1	99	73.898	ENSNBRG00000006457	rpusd1	98	73.898	Neolamprologus_brichardi
ENSDARG00000060192	rpusd1	53	49.711	ENSNLEG00000008424	-	98	50.289	Nomascus_leucogenys
ENSDARG00000060192	rpusd1	100	66.013	ENSMEUG00000016049	RPUSD1	99	66.013	Notamacropus_eugenii
ENSDARG00000060192	rpusd1	100	56.419	ENSOPRG00000008340	RPUSD1	99	56.419	Ochotona_princeps
ENSDARG00000060192	rpusd1	100	61.386	ENSODEG00000016945	RPUSD1	99	61.386	Octodon_degus
ENSDARG00000060192	rpusd1	99	68.197	ENSONIG00000015672	rpusd1	99	70.820	Oreochromis_niloticus
ENSDARG00000060192	rpusd1	99	68.667	ENSORLG00000013009	rpusd1	99	68.667	Oryzias_latipes
ENSDARG00000060192	rpusd1	99	68.333	ENSORLG00020010382	rpusd1	99	68.333	Oryzias_latipes_hni
ENSDARG00000060192	rpusd1	99	67.333	ENSORLG00015021354	rpusd1	99	67.333	Oryzias_latipes_hsok
ENSDARG00000060192	rpusd1	99	70.946	ENSOMEG00000021426	rpusd1	98	70.946	Oryzias_melastigma
ENSDARG00000060192	rpusd1	100	60.000	ENSOGAG00000003795	RPUSD1	99	60.194	Otolemur_garnettii
ENSDARG00000060192	rpusd1	100	63.636	ENSOARG00000014254	RPUSD1	99	64.379	Ovis_aries
ENSDARG00000060192	rpusd1	100	58.786	ENSPPAG00000034797	RPUSD1	89	72.414	Pan_paniscus
ENSDARG00000060192	rpusd1	100	62.333	ENSPPRG00000012389	RPUSD1	99	62.333	Panthera_pardus
ENSDARG00000060192	rpusd1	100	62.333	ENSPTIG00000008545	RPUSD1	83	72.477	Panthera_tigris_altaica
ENSDARG00000060192	rpusd1	100	58.786	ENSPTRG00000007565	RPUSD1	89	72.414	Pan_troglodytes
ENSDARG00000060192	rpusd1	100	58.654	ENSPANG00000024401	RPUSD1	89	72.414	Papio_anubis
ENSDARG00000060192	rpusd1	100	75.497	ENSPKIG00000018890	rpusd1	91	75.497	Paramormyrops_kingsleyae
ENSDARG00000060192	rpusd1	100	68.750	ENSPSIG00000013945	RPUSD1	100	68.750	Pelodiscus_sinensis
ENSDARG00000060192	rpusd1	99	70.205	ENSPMGG00000014950	rpusd1	99	70.205	Periophthalmus_magnuspinnatus
ENSDARG00000060192	rpusd1	100	62.418	ENSPEMG00000000497	Rpusd1	99	63.366	Peromyscus_maniculatus_bairdii
ENSDARG00000060192	rpusd1	99	54.125	ENSPMAG00000001563	rpusd1	99	55.446	Petromyzon_marinus
ENSDARG00000060192	rpusd1	100	68.439	ENSPCIG00000021216	-	93	68.439	Phascolarctos_cinereus
ENSDARG00000060192	rpusd1	99	70.805	ENSPFOG00000007946	rpusd1	98	70.805	Poecilia_formosa
ENSDARG00000060192	rpusd1	99	70.805	ENSPLAG00000011925	rpusd1	98	70.805	Poecilia_latipinna
ENSDARG00000060192	rpusd1	99	71.141	ENSPMEG00000002910	rpusd1	98	71.141	Poecilia_mexicana
ENSDARG00000060192	rpusd1	99	71.237	ENSPREG00000019851	rpusd1	98	71.237	Poecilia_reticulata
ENSDARG00000060192	rpusd1	100	48.161	ENSPCAG00000002258	RPUSD1	99	48.161	Procavia_capensis
ENSDARG00000060192	rpusd1	100	57.413	ENSPCOG00000022582	RPUSD1	99	59.355	Propithecus_coquereli
ENSDARG00000060192	rpusd1	100	56.731	ENSPVAG00000013104	RPUSD1	99	56.958	Pteropus_vampyrus
ENSDARG00000060192	rpusd1	99	71.724	ENSPNYG00000024076	rpusd1	98	72.414	Pundamilia_nyererei
ENSDARG00000060192	rpusd1	100	68.581	ENSPNAG00000013806	rpusd1	100	68.581	Pygocentrus_nattereri
ENSDARG00000060192	rpusd1	100	61.765	ENSRNOG00000023639	Rpusd1	99	62.376	Rattus_norvegicus
ENSDARG00000060192	rpusd1	100	59.355	ENSRBIG00000030238	RPUSD1	89	72.414	Rhinopithecus_bieti
ENSDARG00000060192	rpusd1	100	59.355	ENSRROG00000036663	RPUSD1	89	72.414	Rhinopithecus_roxellana
ENSDARG00000060192	rpusd1	100	61.667	ENSSBOG00000033063	RPUSD1	99	61.204	Saimiri_boliviensis_boliviensis
ENSDARG00000060192	rpusd1	100	66.883	ENSSHAG00000013500	RPUSD1	99	66.883	Sarcophilus_harrisii
ENSDARG00000060192	rpusd1	99	77.592	ENSSFOG00015014394	rpusd1	99	77.592	Scleropages_formosus
ENSDARG00000060192	rpusd1	99	68.421	ENSSMAG00000008045	rpusd1	91	70.724	Scophthalmus_maximus
ENSDARG00000060192	rpusd1	86	78.175	ENSSDUG00000001829	rpusd1	95	71.053	Seriola_dumerili
ENSDARG00000060192	rpusd1	86	78.175	ENSSLDG00000020853	rpusd1	95	71.053	Seriola_lalandi_dorsalis
ENSDARG00000060192	rpusd1	56	71.856	ENSSARG00000011187	-	100	71.856	Sorex_araneus
ENSDARG00000060192	rpusd1	62	61.053	ENSSPUG00000005119	-	100	61.053	Sphenodon_punctatus
ENSDARG00000060192	rpusd1	99	71.569	ENSSPAG00000012708	rpusd1	98	72.697	Stegastes_partitus
ENSDARG00000060192	rpusd1	100	61.489	ENSSSCG00000008000	RPUSD1	98	67.843	Sus_scrofa
ENSDARG00000060192	rpusd1	86	73.810	ENSTGUG00000015375	RPUSD1	99	73.810	Taeniopygia_guttata
ENSDARG00000060192	rpusd1	99	68.421	ENSTRUG00000003041	rpusd1	98	68.750	Takifugu_rubripes
ENSDARG00000060192	rpusd1	99	67.586	ENSTNIG00000002660	rpusd1	99	67.586	Tetraodon_nigroviridis
ENSDARG00000060192	rpusd1	100	61.859	ENSTTRG00000010167	RPUSD1	99	61.812	Tursiops_truncatus
ENSDARG00000060192	rpusd1	100	62.667	ENSUAMG00000012736	RPUSD1	99	62.667	Ursus_americanus
ENSDARG00000060192	rpusd1	100	60.912	ENSUMAG00000021174	RPUSD1	99	62.667	Ursus_maritimus
ENSDARG00000060192	rpusd1	100	63.000	ENSVVUG00000012357	RPUSD1	99	63.000	Vulpes_vulpes
ENSDARG00000060192	rpusd1	100	67.333	ENSXETG00000007184	rpusd1	99	67.333	Xenopus_tropicalis
ENSDARG00000060192	rpusd1	99	70.234	ENSXCOG00000017930	rpusd1	98	70.234	Xiphophorus_couchianus
ENSDARG00000060192	rpusd1	99	70.569	ENSXMAG00000024084	rpusd1	98	70.569	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function