EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060308 (Gene tree)
Gene ID: 100536352
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 92790 bases
Position: chr15:5627877-5720666
Accession: ZDB-GENE-030131-5181
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000135509	Npa1	PF11707.8	2.6e-77	1	1
ENSDARP00000154940	Npa1	PF11707.8	2.7e-77	1	1
ENSDARP00000103108	Npa1	PF11707.8	1.8e-51	1	2
ENSDARP00000103108	Npa1	PF11707.8	1.8e-51	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000158034	-	11494	-	ENSDARP00000135509	2234 (aa)	-	A0A0R4ILM9
ENSDART00000109599	-	6793	-	ENSDARP00000103108	2202 (aa)	-	E7FAZ8
ENSDART00000190332	-	11581	-	ENSDARP00000154940	2263 (aa)	-	A0A2R8QID6

Gene Model

Click here to download ENSDARG00000060308's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060308's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060308	urb1	99	43.692	ENSG00000142207	URB1	99	43.108	Homo_sapiens
ENSDARG00000060308	urb1	97	62.162	ENSAPOG00000020308	urb1	99	62.162	Acanthochromis_polyacanthus
ENSDARG00000060308	urb1	99	43.308	ENSAMEG00000011998	URB1	99	43.440	Ailuropoda_melanoleuca
ENSDARG00000060308	urb1	96	52.076	ENSACIG00000003248	urb1	97	52.054	Amphilophus_citrinellus
ENSDARG00000060308	urb1	99	49.228	ENSAOCG00000010364	urb1	99	49.801	Amphiprion_ocellaris
ENSDARG00000060308	urb1	97	61.170	ENSAPEG00000010758	urb1	99	61.064	Amphiprion_percula
ENSDARG00000060308	urb1	99	53.587	ENSATEG00000011790	urb1	99	53.457	Anabas_testudineus
ENSDARG00000060308	urb1	97	46.226	ENSAPLG00000012791	URB1	99	46.202	Anas_platyrhynchos
ENSDARG00000060308	urb1	99	44.401	ENSACAG00000002817	URB1	99	44.133	Anolis_carolinensis
ENSDARG00000060308	urb1	99	43.565	ENSANAG00000024617	URB1	99	43.152	Aotus_nancymaae
ENSDARG00000060308	urb1	99	53.616	ENSACLG00000024865	urb1	99	53.616	Astatotilapia_calliptera
ENSDARG00000060308	urb1	100	53.829	ENSAMXG00000012306	urb1	99	53.853	Astyanax_mexicanus
ENSDARG00000060308	urb1	99	42.795	ENSBTAG00000012412	URB1	99	42.795	Bos_taurus
ENSDARG00000060308	urb1	99	43.392	ENSCJAG00000009118	URB1	99	42.795	Callithrix_jacchus
ENSDARG00000060308	urb1	99	42.813	ENSCAFG00000008892	URB1	99	42.594	Canis_familiaris
ENSDARG00000060308	urb1	99	42.644	ENSCAFG00020025987	-	99	42.424	Canis_lupus_dingo
ENSDARG00000060308	urb1	99	42.242	ENSCAFG00020025994	-	99	42.022	Canis_lupus_dingo
ENSDARG00000060308	urb1	99	42.907	ENSCHIG00000015645	URB1	99	42.731	Capra_hircus
ENSDARG00000060308	urb1	99	43.703	ENSTSYG00000013286	URB1	99	43.440	Carlito_syrichta
ENSDARG00000060308	urb1	98	43.093	ENSCAPG00000015589	URB1	99	42.832	Cavia_aperea
ENSDARG00000060308	urb1	99	43.654	ENSCPOG00000006748	URB1	99	43.596	Cavia_porcellus
ENSDARG00000060308	urb1	99	43.786	ENSCCAG00000021299	URB1	99	43.371	Cebus_capucinus
ENSDARG00000060308	urb1	99	44.012	ENSCATG00000042630	URB1	99	43.541	Cercocebus_atys
ENSDARG00000060308	urb1	99	43.993	ENSCLAG00000005262	URB1	99	43.993	Chinchilla_lanigera
ENSDARG00000060308	urb1	98	51.748	ENSCSAG00000009584	URB1	95	48.734	Chlorocebus_sabaeus
ENSDARG00000060308	urb1	99	46.261	ENSCPBG00000006454	URB1	99	46.063	Chrysemys_picta_bellii
ENSDARG00000060308	urb1	99	44.224	ENSCANG00000031088	URB1	99	43.640	Colobus_angolensis_palliatus
ENSDARG00000060308	urb1	99	47.953	ENSCGRG00001010616	Urb1	97	45.641	Cricetulus_griseus_chok1gshd
ENSDARG00000060308	urb1	98	50.658	ENSCGRG00000015840	Urb1	98	50.658	Cricetulus_griseus_crigri
ENSDARG00000060308	urb1	99	52.197	ENSCSEG00000012616	urb1	99	52.197	Cynoglossus_semilaevis
ENSDARG00000060308	urb1	94	57.025	ENSCVAG00000009076	urb1	99	56.921	Cyprinodon_variegatus
ENSDARG00000060308	urb1	85	47.059	ENSDNOG00000015586	URB1	99	46.904	Dasypus_novemcinctus
ENSDARG00000060308	urb1	99	44.014	ENSDORG00000006735	Urb1	99	43.970	Dipodomys_ordii
ENSDARG00000060308	urb1	90	61.111	ENSETEG00000009080	URB1	89	61.111	Echinops_telfairi
ENSDARG00000060308	urb1	99	42.914	ENSEASG00005007711	URB1	98	44.109	Equus_asinus_asinus
ENSDARG00000060308	urb1	95	55.227	ENSECAG00000013206	URB1	98	55.114	Equus_caballus
ENSDARG00000060308	urb1	54	56.846	ENSEEUG00000003626	-	53	57.576	Erinaceus_europaeus
ENSDARG00000060308	urb1	99	55.556	ENSELUG00000020516	urb1	99	55.599	Esox_lucius
ENSDARG00000060308	urb1	99	43.725	ENSFCAG00000002177	URB1	99	43.841	Felis_catus
ENSDARG00000060308	urb1	97	62.205	ENSFALG00000004636	URB1	96	61.719	Ficedula_albicollis
ENSDARG00000060308	urb1	99	43.598	ENSFDAG00000007288	URB1	95	43.259	Fukomys_damarensis
ENSDARG00000060308	urb1	99	50.419	ENSFHEG00000000202	urb1	99	50.557	Fundulus_heteroclitus
ENSDARG00000060308	urb1	93	58.750	ENSGMOG00000001838	urb1	91	57.927	Gadus_morhua
ENSDARG00000060308	urb1	99	45.235	ENSGALG00000015887	URB1	99	45.435	Gallus_gallus
ENSDARG00000060308	urb1	99	51.525	ENSGAFG00000020694	urb1	98	58.075	Gambusia_affinis
ENSDARG00000060308	urb1	99	54.925	ENSGACG00000011703	urb1	99	54.880	Gasterosteus_aculeatus
ENSDARG00000060308	urb1	99	45.672	ENSGAGG00000022544	URB1	99	45.411	Gopherus_agassizii
ENSDARG00000060308	urb1	99	43.653	ENSGGOG00000000285	URB1	99	43.146	Gorilla_gorilla
ENSDARG00000060308	urb1	99	53.616	ENSHBUG00000001904	urb1	99	53.616	Haplochromis_burtoni
ENSDARG00000060308	urb1	99	43.120	ENSHGLG00000004907	URB1	99	43.091	Heterocephalus_glaber_female
ENSDARG00000060308	urb1	99	43.304	ENSHGLG00100010749	URB1	99	43.275	Heterocephalus_glaber_male
ENSDARG00000060308	urb1	74	59.381	ENSHCOG00000018683	urb1	99	61.818	Hippocampus_comes
ENSDARG00000060308	urb1	99	54.830	ENSIPUG00000014721	urb1	99	54.742	Ictalurus_punctatus
ENSDARG00000060308	urb1	99	43.249	ENSSTOG00000004539	URB1	99	42.813	Ictidomys_tridecemlineatus
ENSDARG00000060308	urb1	97	52.590	ENSKMAG00000006001	urb1	99	54.020	Kryptolebias_marmoratus
ENSDARG00000060308	urb1	97	51.266	ENSLBEG00000027208	urb1	99	50.949	Labrus_bergylta
ENSDARG00000060308	urb1	96	55.556	ENSLACG00000017059	URB1	92	55.556	Latimeria_chalumnae
ENSDARG00000060308	urb1	100	51.613	ENSLOCG00000009190	urb1	100	51.505	Lepisosteus_oculatus
ENSDARG00000060308	urb1	99	44.537	ENSLAFG00000010407	URB1	99	44.567	Loxodonta_africana
ENSDARG00000060308	urb1	99	44.263	ENSMFAG00000034391	URB1	96	43.747	Macaca_fascicularis
ENSDARG00000060308	urb1	99	44.175	ENSMMUG00000010295	URB1	99	43.659	Macaca_mulatta
ENSDARG00000060308	urb1	99	43.551	ENSMNEG00000032981	URB1	99	43.045	Macaca_nemestrina
ENSDARG00000060308	urb1	99	44.390	ENSMLEG00000041435	URB1	99	43.874	Mandrillus_leucophaeus
ENSDARG00000060308	urb1	99	51.915	ENSMAMG00000011238	urb1	99	51.915	Mastacembelus_armatus
ENSDARG00000060308	urb1	99	52.740	ENSMZEG00005011862	urb1	99	52.627	Maylandia_zebra
ENSDARG00000060308	urb1	98	45.446	ENSMGAG00000014512	URB1	99	45.560	Meleagris_gallopavo
ENSDARG00000060308	urb1	92	51.542	ENSMAUG00000010516	Urb1	99	51.101	Mesocricetus_auratus
ENSDARG00000060308	urb1	99	43.509	ENSMICG00000016424	URB1	99	43.133	Microcebus_murinus
ENSDARG00000060308	urb1	99	43.096	ENSMOCG00000012613	Urb1	99	42.838	Microtus_ochrogaster
ENSDARG00000060308	urb1	99	43.728	ENSMODG00000021076	URB1	98	43.640	Monodelphis_domestica
ENSDARG00000060308	urb1	97	60.593	ENSMALG00000017411	urb1	99	60.593	Monopterus_albus
ENSDARG00000060308	urb1	99	43.389	MGP_CAROLIEiJ_G0020948	Urb1	99	43.039	Mus_caroli
ENSDARG00000060308	urb1	99	43.233	ENSMUSG00000039929	Urb1	99	42.882	Mus_musculus
ENSDARG00000060308	urb1	99	42.926	MGP_PahariEiJ_G0016653	Urb1	99	42.707	Mus_pahari
ENSDARG00000060308	urb1	99	43.320	MGP_SPRETEiJ_G0021854	Urb1	99	42.970	Mus_spretus
ENSDARG00000060308	urb1	99	43.648	ENSMPUG00000001123	URB1	99	43.398	Mustela_putorius_furo
ENSDARG00000060308	urb1	99	43.507	ENSNGAG00000001905	Urb1	99	43.198	Nannospalax_galili
ENSDARG00000060308	urb1	82	52.868	ENSNBRG00000001049	urb1	99	52.868	Neolamprologus_brichardi
ENSDARG00000060308	urb1	99	42.737	ENSNLEG00000026872	URB1	99	42.292	Nomascus_leucogenys
ENSDARG00000060308	urb1	87	54.802	ENSMEUG00000010828	URB1	94	47.628	Notamacropus_eugenii
ENSDARG00000060308	urb1	98	42.565	ENSOPRG00000013482	URB1	98	42.227	Ochotona_princeps
ENSDARG00000060308	urb1	99	44.098	ENSODEG00000002587	URB1	99	43.923	Octodon_degus
ENSDARG00000060308	urb1	99	53.744	ENSONIG00000005599	urb1	99	53.700	Oreochromis_niloticus
ENSDARG00000060308	urb1	99	44.084	ENSOCUG00000009381	URB1	99	43.816	Oryctolagus_cuniculus
ENSDARG00000060308	urb1	99	52.490	ENSORLG00000003429	urb1	99	52.226	Oryzias_latipes
ENSDARG00000060308	urb1	99	52.423	ENSORLG00020013785	urb1	99	52.247	Oryzias_latipes_hni
ENSDARG00000060308	urb1	93	62.567	ENSORLG00015019421	urb1	99	62.567	Oryzias_latipes_hsok
ENSDARG00000060308	urb1	77	61.538	ENSOMEG00000002094	urb1	98	61.336	Oryzias_melastigma
ENSDARG00000060308	urb1	99	43.791	ENSOGAG00000017140	URB1	99	43.415	Otolemur_garnettii
ENSDARG00000060308	urb1	95	47.282	ENSOARG00000013679	URB1	98	47.152	Ovis_aries
ENSDARG00000060308	urb1	99	43.634	ENSPPAG00000003423	URB1	99	43.146	Pan_paniscus
ENSDARG00000060308	urb1	99	43.753	ENSPPRG00000023131	URB1	99	43.709	Panthera_pardus
ENSDARG00000060308	urb1	88	44.373	ENSPTIG00000016125	URB1	94	44.323	Panthera_tigris_altaica
ENSDARG00000060308	urb1	99	43.546	ENSPTRG00000013852	URB1	99	43.058	Pan_troglodytes
ENSDARG00000060308	urb1	99	44.170	ENSPANG00000021964	URB1	99	43.698	Papio_anubis
ENSDARG00000060308	urb1	99	51.560	ENSPKIG00000003683	urb1	99	51.692	Paramormyrops_kingsleyae
ENSDARG00000060308	urb1	99	43.802	ENSPEMG00000021205	Urb1	98	43.758	Peromyscus_maniculatus_bairdii
ENSDARG00000060308	urb1	79	31.562	ENSPMAG00000009733	URB1	99	33.078	Petromyzon_marinus
ENSDARG00000060308	urb1	99	43.298	ENSPCIG00000016350	URB1	99	43.815	Phascolarctos_cinereus
ENSDARG00000060308	urb1	97	51.283	ENSPLAG00000004371	urb1	99	51.642	Poecilia_latipinna
ENSDARG00000060308	urb1	99	52.093	ENSPMEG00000006634	urb1	99	51.785	Poecilia_mexicana
ENSDARG00000060308	urb1	99	52.025	ENSPREG00000013453	urb1	99	51.673	Poecilia_reticulata
ENSDARG00000060308	urb1	99	43.507	ENSPPYG00000011359	URB1	99	43.122	Pongo_abelii
ENSDARG00000060308	urb1	99	39.597	ENSPCAG00000007430	URB1	99	39.649	Procavia_capensis
ENSDARG00000060308	urb1	99	44.051	ENSPCOG00000022695	URB1	99	43.794	Propithecus_coquereli
ENSDARG00000060308	urb1	99	42.932	ENSPVAG00000000889	URB1	99	42.669	Pteropus_vampyrus
ENSDARG00000060308	urb1	99	51.571	ENSPNYG00000010589	urb1	99	51.571	Pundamilia_nyererei
ENSDARG00000060308	urb1	100	56.595	ENSPNAG00000019324	urb1	99	56.727	Pygocentrus_nattereri
ENSDARG00000060308	urb1	99	42.926	ENSRNOG00000002080	Urb1	99	42.894	Rattus_norvegicus
ENSDARG00000060308	urb1	99	44.194	ENSRBIG00000033122	URB1	99	43.610	Rhinopithecus_bieti
ENSDARG00000060308	urb1	99	44.238	ENSRROG00000040237	URB1	99	43.654	Rhinopithecus_roxellana
ENSDARG00000060308	urb1	99	43.129	ENSSBOG00000027672	URB1	99	42.788	Saimiri_boliviensis_boliviensis
ENSDARG00000060308	urb1	99	49.412	ENSSHAG00000005140	URB1	96	49.412	Sarcophilus_harrisii
ENSDARG00000060308	urb1	93	54.846	ENSSFOG00015000339	urb1	99	54.563	Scleropages_formosus
ENSDARG00000060308	urb1	99	53.634	ENSSMAG00000003782	urb1	99	53.590	Scophthalmus_maximus
ENSDARG00000060308	urb1	99	54.901	ENSSDUG00000012313	urb1	99	54.857	Seriola_dumerili
ENSDARG00000060308	urb1	99	55.101	ENSSLDG00000023179	urb1	99	55.057	Seriola_lalandi_dorsalis
ENSDARG00000060308	urb1	99	45.628	ENSSPUG00000012447	URB1	99	45.793	Sphenodon_punctatus
ENSDARG00000060308	urb1	97	60.541	ENSSPAG00000006325	urb1	99	60.541	Stegastes_partitus
ENSDARG00000060308	urb1	99	43.253	ENSSSCG00000032024	URB1	99	43.253	Sus_scrofa
ENSDARG00000060308	urb1	74	47.418	ENSTGUG00000013442	URB1	100	47.090	Taeniopygia_guttata
ENSDARG00000060308	urb1	99	53.009	ENSTRUG00000009372	urb1	99	52.920	Takifugu_rubripes
ENSDARG00000060308	urb1	99	51.133	ENSTNIG00000016277	urb1	99	51.157	Tetraodon_nigroviridis
ENSDARG00000060308	urb1	73	67.073	ENSTBEG00000010044	URB1	74	65.854	Tupaia_belangeri
ENSDARG00000060308	urb1	86	59.375	ENSTTRG00000007712	URB1	87	59.375	Tursiops_truncatus
ENSDARG00000060308	urb1	99	43.522	ENSUAMG00000012231	URB1	99	43.478	Ursus_americanus
ENSDARG00000060308	urb1	89	44.884	ENSUMAG00000017419	URB1	95	44.417	Ursus_maritimus
ENSDARG00000060308	urb1	63	68.675	ENSVPAG00000001164	URB1	64	67.470	Vicugna_pacos
ENSDARG00000060308	urb1	94	54.902	ENSVVUG00000000551	URB1	99	42.656	Vulpes_vulpes
ENSDARG00000060308	urb1	99	44.755	ENSXETG00000009895	urb1	99	44.668	Xenopus_tropicalis
ENSDARG00000060308	urb1	97	59.459	ENSXCOG00000005500	urb1	99	59.459	Xiphophorus_couchianus
ENSDARG00000060308	urb1	97	60.541	ENSXMAG00000007253	urb1	99	60.541	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0005730	nucleolus	21873635.	IBA	Component