EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060338 (Gene tree)
Gene ID: 564925
Gene Symbol: trmt12
Alias: zgc:153361
Full Name: tRNA methyltransferase 12 homolog
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 8146 bases
Position: chr14:35414632-35422777
Accession: ZDB-GENE-060825-182
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000152027	MTS	PF05175.14	4.5e-05	1	1
ENSDARP00000079349	Met_10	PF02475.16	3e-30	1	1
ENSDARP00000152027	Met_10	PF02475.16	5.9e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000084914	-	1439	-	ENSDARP00000079349	408 (aa)	-	F1QGD7
ENSDART00000191516	-	924	-	ENSDARP00000152027	283 (aa)	-	A0A2R8QBL6

Gene Model

Click here to download ENSDARG00000060338's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060338's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060338	trmt12	95	52.593	ENSG00000183665	TRMT12	92	49.395	Homo_sapiens
ENSDARG00000060338	trmt12	99	60.784	ENSAPOG00000011979	trmt12	99	60.784	Acanthochromis_polyacanthus
ENSDARG00000060338	trmt12	96	54.579	ENSAMEG00000019612	TRMT12	93	51.442	Ailuropoda_melanoleuca
ENSDARG00000060338	trmt12	95	59.744	ENSACIG00000012982	trmt12	99	59.744	Amphilophus_citrinellus
ENSDARG00000060338	trmt12	99	60.934	ENSAOCG00000020570	trmt12	99	61.399	Amphiprion_ocellaris
ENSDARG00000060338	trmt12	99	60.197	ENSAPEG00000006335	trmt12	99	60.622	Amphiprion_percula
ENSDARG00000060338	trmt12	100	57.746	ENSATEG00000018316	trmt12	99	58.680	Anabas_testudineus
ENSDARG00000060338	trmt12	99	58.865	ENSACLG00000001008	trmt12	99	58.394	Astatotilapia_calliptera
ENSDARG00000060338	trmt12	99	67.491	ENSAMXG00000040366	trmt12	99	64.833	Astyanax_mexicanus
ENSDARG00000060338	trmt12	97	50.240	ENSBTAG00000020398	TRMT12	90	50.240	Bos_taurus
ENSDARG00000060338	trmt12	68	36.788	WBGene00009586	F40F9.10	50	38.197	Caenorhabditis_elegans
ENSDARG00000060338	trmt12	96	51.282	ENSCJAG00000022174	TRMT12	93	48.077	Callithrix_jacchus
ENSDARG00000060338	trmt12	96	53.480	ENSCAFG00000001040	TRMT12	95	50.962	Canis_familiaris
ENSDARG00000060338	trmt12	96	53.480	ENSCAFG00020006500	TRMT12	95	50.962	Canis_lupus_dingo
ENSDARG00000060338	trmt12	96	51.648	ENSCHIG00000016574	TRMT12	95	50.481	Capra_hircus
ENSDARG00000060338	trmt12	99	52.837	ENSCPOG00000026520	TRMT12	95	51.054	Cavia_porcellus
ENSDARG00000060338	trmt12	96	51.648	ENSCSAG00000018615	TRMT12	93	48.798	Chlorocebus_sabaeus
ENSDARG00000060338	trmt12	95	52.788	ENSCPBG00000014290	TRMT12	93	48.260	Chrysemys_picta_bellii
ENSDARG00000060338	trmt12	72	47.475	ENSCING00000019633	-	97	47.475	Ciona_intestinalis
ENSDARG00000060338	trmt12	74	47.039	ENSCSAVG00000000415	-	94	47.039	Ciona_savignyi
ENSDARG00000060338	trmt12	97	48.020	ENSCGRG00001014834	Trmt12	95	48.267	Cricetulus_griseus_chok1gshd
ENSDARG00000060338	trmt12	100	57.394	ENSCSEG00000002675	trmt12	95	57.353	Cynoglossus_semilaevis
ENSDARG00000060338	trmt12	99	58.865	ENSCVAG00000005590	trmt12	99	58.333	Cyprinodon_variegatus
ENSDARG00000060338	trmt12	96	50.916	ENSETEG00000009373	TRMT12	93	47.619	Echinops_telfairi
ENSDARG00000060338	trmt12	96	52.381	ENSEASG00005022441	TRMT12	95	50.594	Equus_asinus_asinus
ENSDARG00000060338	trmt12	95	52.030	ENSEEUG00000004844	TRMT12	93	48.068	Erinaceus_europaeus
ENSDARG00000060338	trmt12	100	61.614	ENSELUG00000004240	trmt12	100	61.614	Esox_lucius
ENSDARG00000060338	trmt12	66	54.545	ENSFALG00000003825	TRMT12	96	61.137	Ficedula_albicollis
ENSDARG00000060338	trmt12	99	51.418	ENSFDAG00000016647	TRMT12	97	49.535	Fukomys_damarensis
ENSDARG00000060338	trmt12	93	48.294	ENSFHEG00000017338	trmt12	96	48.294	Fundulus_heteroclitus
ENSDARG00000060338	trmt12	81	52.841	ENSGALG00000006773	TRMT12	76	52.841	Gallus_gallus
ENSDARG00000060338	trmt12	99	56.265	ENSGAFG00000020056	trmt12	99	56.265	Gambusia_affinis
ENSDARG00000060338	trmt12	96	57.289	ENSGACG00000017351	trmt12	100	57.289	Gasterosteus_aculeatus
ENSDARG00000060338	trmt12	95	52.788	ENSGAGG00000006032	TRMT12	95	49.065	Gopherus_agassizii
ENSDARG00000060338	trmt12	99	58.511	ENSHBUG00000016412	trmt12	99	58.394	Haplochromis_burtoni
ENSDARG00000060338	trmt12	99	51.418	ENSHGLG00000020498	TRMT12	97	49.535	Heterocephalus_glaber_female
ENSDARG00000060338	trmt12	99	51.418	ENSHGLG00100020132	TRMT12	97	48.941	Heterocephalus_glaber_male
ENSDARG00000060338	trmt12	99	53.659	ENSHCOG00000005050	trmt12	99	53.659	Hippocampus_comes
ENSDARG00000060338	trmt12	99	67.616	ENSIPUG00000018011	trmt12	92	66.019	Ictalurus_punctatus
ENSDARG00000060338	trmt12	96	53.650	ENSSTOG00000030617	TRMT12	95	50.120	Ictidomys_tridecemlineatus
ENSDARG00000060338	trmt12	100	58.293	ENSKMAG00000000891	trmt12	100	58.293	Kryptolebias_marmoratus
ENSDARG00000060338	trmt12	99	55.854	ENSLBEG00000028712	trmt12	99	55.854	Labrus_bergylta
ENSDARG00000060338	trmt12	53	70.909	ENSLBEG00000017456	-	87	70.909	Labrus_bergylta
ENSDARG00000060338	trmt12	98	55.197	ENSLACG00000015869	TRMT12	96	51.487	Latimeria_chalumnae
ENSDARG00000060338	trmt12	99	57.746	ENSLOCG00000015290	trmt12	100	54.988	Lepisosteus_oculatus
ENSDARG00000060338	trmt12	96	52.747	ENSLAFG00000012519	TRMT12	95	49.644	Loxodonta_africana
ENSDARG00000060338	trmt12	96	52.015	ENSMMUG00000015490	TRMT12	93	49.038	Macaca_mulatta
ENSDARG00000060338	trmt12	99	57.985	ENSMAMG00000020311	trmt12	99	57.985	Mastacembelus_armatus
ENSDARG00000060338	trmt12	99	58.865	ENSMZEG00005007349	trmt12	99	58.637	Maylandia_zebra
ENSDARG00000060338	trmt12	99	49.643	ENSMGAG00000004174	TRMT12	95	49.052	Meleagris_gallopavo
ENSDARG00000060338	trmt12	100	57.213	ENSMMOG00000000412	trmt12	100	57.213	Mola_mola
ENSDARG00000060338	trmt12	99	48.754	ENSMODG00000011798	-	87	48.077	Monodelphis_domestica
ENSDARG00000060338	trmt12	97	49.628	ENSMODG00000021403	-	92	49.628	Monodelphis_domestica
ENSDARG00000060338	trmt12	99	59.069	ENSMALG00000008668	trmt12	99	59.069	Monopterus_albus
ENSDARG00000060338	trmt12	96	53.114	MGP_CAROLIEiJ_G0019820	Trmt12	93	49.398	Mus_caroli
ENSDARG00000060338	trmt12	96	53.480	ENSMUSG00000037085	Trmt12	93	50.000	Mus_musculus
ENSDARG00000060338	trmt12	96	53.114	MGP_PahariEiJ_G0019829	Trmt12	93	50.120	Mus_pahari
ENSDARG00000060338	trmt12	96	53.114	MGP_SPRETEiJ_G0020717	Trmt12	93	49.760	Mus_spretus
ENSDARG00000060338	trmt12	96	53.846	ENSMPUG00000019150	TRMT12	93	50.962	Mustela_putorius_furo
ENSDARG00000060338	trmt12	96	50.549	ENSMLUG00000003753	TRMT12	95	48.798	Myotis_lucifugus
ENSDARG00000060338	trmt12	99	51.418	ENSNGAG00000014548	Trmt12	97	49.296	Nannospalax_galili
ENSDARG00000060338	trmt12	99	59.220	ENSNBRG00000021510	trmt12	99	58.881	Neolamprologus_brichardi
ENSDARG00000060338	trmt12	95	50.923	ENSOPRG00000008067	TRMT12	93	47.143	Ochotona_princeps
ENSDARG00000060338	trmt12	99	51.418	ENSODEG00000018933	TRMT12	97	49.531	Octodon_degus
ENSDARG00000060338	trmt12	99	59.220	ENSONIG00000002614	trmt12	99	58.881	Oreochromis_niloticus
ENSDARG00000060338	trmt12	95	52.963	ENSOANG00000009987	TRMT12	96	47.722	Ornithorhynchus_anatinus
ENSDARG00000060338	trmt12	96	54.212	ENSOCUG00000026379	TRMT12	70	57.372	Oryctolagus_cuniculus
ENSDARG00000060338	trmt12	99	57.002	ENSORLG00000001280	trmt12	99	57.002	Oryzias_latipes
ENSDARG00000060338	trmt12	99	56.265	ENSORLG00020000708	trmt12	99	56.265	Oryzias_latipes_hni
ENSDARG00000060338	trmt12	99	56.618	ENSORLG00015012344	trmt12	99	56.618	Oryzias_latipes_hsok
ENSDARG00000060338	trmt12	100	55.830	ENSOMEG00000015267	trmt12	98	55.528	Oryzias_melastigma
ENSDARG00000060338	trmt12	96	53.114	ENSOGAG00000015845	TRMT12	95	49.519	Otolemur_garnettii
ENSDARG00000060338	trmt12	99	61.566	ENSPKIG00000004640	trmt12	99	59.559	Paramormyrops_kingsleyae
ENSDARG00000060338	trmt12	59	56.506	ENSPSIG00000003476	TRMT12	99	56.506	Pelodiscus_sinensis
ENSDARG00000060338	trmt12	100	55.637	ENSPMGG00000016356	trmt12	97	55.637	Periophthalmus_magnuspinnatus
ENSDARG00000060338	trmt12	99	50.000	ENSPCIG00000002967	TRMT12	87	49.398	Phascolarctos_cinereus
ENSDARG00000060338	trmt12	99	54.448	ENSPFOG00000016931	trmt12	98	54.258	Poecilia_formosa
ENSDARG00000060338	trmt12	99	55.872	ENSPLAG00000020621	trmt12	99	55.474	Poecilia_latipinna
ENSDARG00000060338	trmt12	99	57.651	ENSPMEG00000000818	trmt12	99	56.691	Poecilia_mexicana
ENSDARG00000060338	trmt12	99	57.244	ENSPREG00000011621	trmt12	99	56.724	Poecilia_reticulata
ENSDARG00000060338	trmt12	96	52.747	ENSPPYG00000018866	TRMT12	93	49.519	Pongo_abelii
ENSDARG00000060338	trmt12	96	52.747	ENSPCAG00000000556	TRMT12	93	49.519	Procavia_capensis
ENSDARG00000060338	trmt12	96	51.648	ENSPVAG00000009149	TRMT12	93	49.279	Pteropus_vampyrus
ENSDARG00000060338	trmt12	95	57.761	ENSPNYG00000010696	trmt12	99	57.761	Pundamilia_nyererei
ENSDARG00000060338	trmt12	100	68.056	ENSPNAG00000019028	trmt12	99	66.905	Pygocentrus_nattereri
ENSDARG00000060338	trmt12	96	55.311	ENSRNOG00000008978	Trmt12	95	51.084	Rattus_norvegicus
ENSDARG00000060338	trmt12	99	47.596	ENSSHAG00000003345	TRMT12	94	47.596	Sarcophilus_harrisii
ENSDARG00000060338	trmt12	99	56.643	ENSSFOG00015006090	trmt12	99	55.847	Scleropages_formosus
ENSDARG00000060338	trmt12	100	58.578	ENSSMAG00000013247	trmt12	100	58.578	Scophthalmus_maximus
ENSDARG00000060338	trmt12	99	60.880	ENSSDUG00000006168	trmt12	99	60.880	Seriola_dumerili
ENSDARG00000060338	trmt12	99	60.784	ENSSLDG00000025007	trmt12	99	60.784	Seriola_lalandi_dorsalis
ENSDARG00000060338	trmt12	95	50.186	ENSSPUG00000005321	TRMT12	93	47.294	Sphenodon_punctatus
ENSDARG00000060338	trmt12	99	60.784	ENSSPAG00000009435	trmt12	97	60.784	Stegastes_partitus
ENSDARG00000060338	trmt12	99	48.095	ENSTGUG00000002280	TRMT12	99	48.694	Taeniopygia_guttata
ENSDARG00000060338	trmt12	99	55.674	ENSTRUG00000011548	trmt12	99	55.583	Takifugu_rubripes
ENSDARG00000060338	trmt12	99	55.206	ENSTNIG00000016866	trmt12	99	55.206	Tetraodon_nigroviridis
ENSDARG00000060338	trmt12	96	53.846	ENSUAMG00000002067	TRMT12	96	50.831	Ursus_americanus
ENSDARG00000060338	trmt12	96	53.846	ENSVPAG00000006519	TRMT12	93	50.721	Vicugna_pacos
ENSDARG00000060338	trmt12	96	52.747	ENSVVUG00000016790	TRMT12	93	50.721	Vulpes_vulpes
ENSDARG00000060338	trmt12	99	51.590	ENSXETG00000009641	trmt12	95	49.755	Xenopus_tropicalis
ENSDARG00000060338	trmt12	99	56.341	ENSXCOG00000016505	trmt12	99	56.341	Xiphophorus_couchianus
ENSDARG00000060338	trmt12	99	56.863	ENSXMAG00000025318	trmt12	99	56.863	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005543	phospholipid binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006887	exocytosis	-	IEA	Process
GO:0008033	tRNA processing	-	IEA	Process
GO:0008175	tRNA methyltransferase activity	21873635.	IBA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0017137	Rab GTPase binding	-	IEA	Function
GO:0030488	tRNA methylation	21873635.	IBA	Process
GO:0031591	wybutosine biosynthetic process	21873635.	IBA	Process
GO:0102522	tRNA 4-demethylwyosine alpha-amino-alpha-carboxypropyltransferase activity	-	IEA	Function