EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060620 (Gene tree)
Gene ID: 569525
Gene Symbol: lig4
Alias: zgc:165595
Full Name: ligase IV%2C DNA%2C ATP-dependent
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 3633 bases
Position: chr1:29267841-29271473
Accession: ZDB-GENE-070820-10
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000080083	RNA_ligase	PF09414.10	1.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000085648	-	3262	XM_005159958	ENSDARP00000080083	909 (aa)	XP_005160015	F1Q9E8

Gene Model

Click here to download ENSDARG00000060620's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060620's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060620	lig4	98	64.452	ENSG00000174405	LIG4	100	65.089	Homo_sapiens
ENSDARG00000060620	lig4	100	80.418	ENSAPOG00000000866	lig4	100	80.418	Acanthochromis_polyacanthus
ENSDARG00000060620	lig4	99	62.732	ENSAMEG00000019685	LIG4	99	62.732	Ailuropoda_melanoleuca
ENSDARG00000060620	lig4	99	80.308	ENSACIG00000018309	lig4	99	80.308	Amphilophus_citrinellus
ENSDARG00000060620	lig4	100	80.748	ENSAOCG00000011768	lig4	100	80.748	Amphiprion_ocellaris
ENSDARG00000060620	lig4	100	80.858	ENSAPEG00000017815	lig4	100	80.858	Amphiprion_percula
ENSDARG00000060620	lig4	100	79.231	ENSATEG00000005583	lig4	100	79.231	Anabas_testudineus
ENSDARG00000060620	lig4	96	66.438	ENSAPLG00000001673	LIG4	99	66.438	Anas_platyrhynchos
ENSDARG00000060620	lig4	99	66.188	ENSACAG00000014566	LIG4	99	66.188	Anolis_carolinensis
ENSDARG00000060620	lig4	98	63.969	ENSANAG00000012446	LIG4	99	63.969	Aotus_nancymaae
ENSDARG00000060620	lig4	99	80.308	ENSACLG00000027051	lig4	99	80.308	Astatotilapia_calliptera
ENSDARG00000060620	lig4	100	83.315	ENSAMXG00000008192	lig4	95	83.315	Astyanax_mexicanus
ENSDARG00000060620	lig4	98	63.525	ENSBTAG00000015868	LIG4	99	63.525	Bos_taurus
ENSDARG00000060620	lig4	98	63.636	ENSCJAG00000014689	LIG4	99	63.636	Callithrix_jacchus
ENSDARG00000060620	lig4	98	63.898	ENSCAFG00000006031	LIG4	99	63.898	Canis_familiaris
ENSDARG00000060620	lig4	98	63.898	ENSCAFG00020021230	LIG4	99	63.898	Canis_lupus_dingo
ENSDARG00000060620	lig4	98	63.525	ENSCHIG00000001019	LIG4	99	63.525	Capra_hircus
ENSDARG00000060620	lig4	98	64.191	ENSCAPG00000006284	LIG4	99	64.191	Cavia_aperea
ENSDARG00000060620	lig4	98	64.080	ENSCPOG00000014266	LIG4	99	64.080	Cavia_porcellus
ENSDARG00000060620	lig4	98	63.898	ENSCCAG00000019971	LIG4	99	63.898	Cebus_capucinus
ENSDARG00000060620	lig4	99	64.388	ENSCATG00000021075	LIG4	99	64.388	Cercocebus_atys
ENSDARG00000060620	lig4	98	64.745	ENSCLAG00000003376	LIG4	99	64.745	Chinchilla_lanigera
ENSDARG00000060620	lig4	98	64.563	ENSCSAG00000000211	LIG4	99	64.563	Chlorocebus_sabaeus
ENSDARG00000060620	lig4	98	67.889	ENSCPBG00000023291	LIG4	100	67.287	Chrysemys_picta_bellii
ENSDARG00000060620	lig4	69	46.614	ENSCING00000009536	-	97	46.614	Ciona_intestinalis
ENSDARG00000060620	lig4	83	44.474	ENSCSAVG00000010336	-	98	44.474	Ciona_savignyi
ENSDARG00000060620	lig4	98	64.341	ENSCANG00000005805	LIG4	99	64.341	Colobus_angolensis_palliatus
ENSDARG00000060620	lig4	98	63.787	ENSCGRG00001012072	Lig4	99	63.787	Cricetulus_griseus_chok1gshd
ENSDARG00000060620	lig4	98	63.787	ENSCGRG00000013417	Lig4	99	63.787	Cricetulus_griseus_crigri
ENSDARG00000060620	lig4	97	77.452	ENSCSEG00000013905	lig4	96	77.452	Cynoglossus_semilaevis
ENSDARG00000060620	lig4	100	79.121	ENSCVAG00000007896	lig4	100	79.121	Cyprinodon_variegatus
ENSDARG00000060620	lig4	98	64.452	ENSDNOG00000000513	LIG4	99	64.452	Dasypus_novemcinctus
ENSDARG00000060620	lig4	98	65.188	ENSDORG00000027303	Lig4	99	65.188	Dipodomys_ordii
ENSDARG00000060620	lig4	89	31.887	FBgn0030506	Lig4	91	31.887	Drosophila_melanogaster
ENSDARG00000060620	lig4	98	62.348	ENSETEG00000015563	LIG4	100	62.901	Echinops_telfairi
ENSDARG00000060620	lig4	99	42.842	ENSEBUG00000014243	lig4	99	42.842	Eptatretus_burgeri
ENSDARG00000060620	lig4	98	64.009	ENSEASG00005022073	LIG4	99	64.009	Equus_asinus_asinus
ENSDARG00000060620	lig4	98	63.747	ENSECAG00000003257	LIG4	99	63.747	Equus_caballus
ENSDARG00000060620	lig4	99	80.222	ENSELUG00000006787	lig4	99	80.222	Esox_lucius
ENSDARG00000060620	lig4	99	62.678	ENSFCAG00000031985	LIG4	99	62.678	Felis_catus
ENSDARG00000060620	lig4	89	67.203	ENSFALG00000004214	LIG4	98	67.203	Ficedula_albicollis
ENSDARG00000060620	lig4	98	63.455	ENSFDAG00000008973	LIG4	99	63.455	Fukomys_damarensis
ENSDARG00000060620	lig4	100	79.693	ENSFHEG00000007398	lig4	91	79.912	Fundulus_heteroclitus
ENSDARG00000060620	lig4	85	75.902	ENSGMOG00000012843	lig4	99	75.902	Gadus_morhua
ENSDARG00000060620	lig4	100	65.241	ENSGALG00000016854	LIG4	100	65.241	Gallus_gallus
ENSDARG00000060620	lig4	99	78.861	ENSGAFG00000019779	lig4	96	79.080	Gambusia_affinis
ENSDARG00000060620	lig4	100	76.154	ENSGACG00000014135	lig4	99	76.374	Gasterosteus_aculeatus
ENSDARG00000060620	lig4	98	64.341	ENSGGOG00000027771	LIG4	99	64.341	Gorilla_gorilla
ENSDARG00000060620	lig4	99	80.088	ENSHBUG00000006245	lig4	99	80.088	Haplochromis_burtoni
ENSDARG00000060620	lig4	98	64.080	ENSHGLG00000000718	LIG4	99	64.080	Heterocephalus_glaber_female
ENSDARG00000060620	lig4	98	64.080	ENSHGLG00100003265	LIG4	99	64.080	Heterocephalus_glaber_male
ENSDARG00000060620	lig4	100	75.658	ENSHCOG00000012010	lig4	100	75.658	Hippocampus_comes
ENSDARG00000060620	lig4	100	80.858	ENSIPUG00000013748	lig4	100	80.858	Ictalurus_punctatus
ENSDARG00000060620	lig4	99	64.238	ENSSTOG00000024303	LIG4	99	64.238	Ictidomys_tridecemlineatus
ENSDARG00000060620	lig4	98	63.969	ENSJJAG00000006750	Lig4	99	63.969	Jaculus_jaculus
ENSDARG00000060620	lig4	100	77.448	ENSKMAG00000001149	lig4	100	77.448	Kryptolebias_marmoratus
ENSDARG00000060620	lig4	91	78.476	ENSLBEG00000014578	lig4	100	78.476	Labrus_bergylta
ENSDARG00000060620	lig4	100	67.325	ENSLACG00000003282	LIG4	100	67.325	Latimeria_chalumnae
ENSDARG00000060620	lig4	100	72.508	ENSLOCG00000008901	lig4	99	72.508	Lepisosteus_oculatus
ENSDARG00000060620	lig4	99	62.514	ENSLAFG00000031152	LIG4	100	62.514	Loxodonta_africana
ENSDARG00000060620	lig4	98	64.673	ENSMFAG00000037235	LIG4	99	64.673	Macaca_fascicularis
ENSDARG00000060620	lig4	98	64.563	ENSMMUG00000008874	LIG4	99	64.563	Macaca_mulatta
ENSDARG00000060620	lig4	98	64.673	ENSMNEG00000023575	LIG4	99	64.673	Macaca_nemestrina
ENSDARG00000060620	lig4	98	64.452	ENSMLEG00000026720	LIG4	99	64.452	Mandrillus_leucophaeus
ENSDARG00000060620	lig4	100	79.231	ENSMAMG00000008472	lig4	99	79.231	Mastacembelus_armatus
ENSDARG00000060620	lig4	99	80.308	ENSMZEG00005001855	lig4	99	80.308	Maylandia_zebra
ENSDARG00000060620	lig4	100	65.351	ENSMGAG00000015532	LIG4	100	65.351	Meleagris_gallopavo
ENSDARG00000060620	lig4	98	62.971	ENSMOCG00000019000	Lig4	99	62.971	Microtus_ochrogaster
ENSDARG00000060620	lig4	100	77.473	ENSMMOG00000004390	lig4	100	77.473	Mola_mola
ENSDARG00000060620	lig4	99	63.516	ENSMODG00000025064	LIG4	99	63.776	Monodelphis_domestica
ENSDARG00000060620	lig4	100	79.121	ENSMALG00000008555	lig4	100	79.121	Monopterus_albus
ENSDARG00000060620	lig4	98	63.747	MGP_CAROLIEiJ_G0030809	Lig4	99	63.747	Mus_caroli
ENSDARG00000060620	lig4	98	63.415	ENSMUSG00000049717	Lig4	99	63.415	Mus_musculus
ENSDARG00000060620	lig4	98	63.636	MGP_PahariEiJ_G0021270	Lig4	99	63.636	Mus_pahari
ENSDARG00000060620	lig4	98	63.858	MGP_SPRETEiJ_G0031917	Lig4	99	63.858	Mus_spretus
ENSDARG00000060620	lig4	98	63.636	ENSMPUG00000018675	LIG4	99	63.636	Mustela_putorius_furo
ENSDARG00000060620	lig4	98	63.677	ENSMLUG00000001267	LIG4	99	63.677	Myotis_lucifugus
ENSDARG00000060620	lig4	99	63.797	ENSNGAG00000013258	Lig4	99	63.797	Nannospalax_galili
ENSDARG00000060620	lig4	99	80.198	ENSNBRG00000021252	lig4	99	80.198	Neolamprologus_brichardi
ENSDARG00000060620	lig4	98	64.009	ENSNLEG00000007888	LIG4	99	64.009	Nomascus_leucogenys
ENSDARG00000060620	lig4	98	62.860	ENSOPRG00000005765	LIG4	99	62.860	Ochotona_princeps
ENSDARG00000060620	lig4	98	64.009	ENSODEG00000019683	LIG4	99	64.009	Octodon_degus
ENSDARG00000060620	lig4	99	80.528	ENSONIG00000011969	lig4	99	80.528	Oreochromis_niloticus
ENSDARG00000060620	lig4	98	63.858	ENSOCUG00000015734	LIG4	99	63.858	Oryctolagus_cuniculus
ENSDARG00000060620	lig4	99	77.058	ENSORLG00000004041	lig4	99	77.278	Oryzias_latipes
ENSDARG00000060620	lig4	99	76.729	ENSORLG00020019607	lig4	99	76.948	Oryzias_latipes_hni
ENSDARG00000060620	lig4	99	76.839	ENSORLG00015017754	lig4	99	77.058	Oryzias_latipes_hsok
ENSDARG00000060620	lig4	75	82.482	ENSOMEG00000003459	lig4	99	82.482	Oryzias_melastigma
ENSDARG00000060620	lig4	98	64.009	ENSOGAG00000032120	LIG4	99	64.009	Otolemur_garnettii
ENSDARG00000060620	lig4	81	67.663	ENSOARG00000005590	LIG4	97	67.663	Ovis_aries
ENSDARG00000060620	lig4	98	64.341	ENSPPAG00000032998	LIG4	99	64.341	Pan_paniscus
ENSDARG00000060620	lig4	99	63.117	ENSPPRG00000017804	LIG4	99	63.117	Panthera_pardus
ENSDARG00000060620	lig4	99	63.008	ENSPTIG00000010051	LIG4	99	63.008	Panthera_tigris_altaica
ENSDARG00000060620	lig4	98	64.452	ENSPTRG00000006025	LIG4	99	64.452	Pan_troglodytes
ENSDARG00000060620	lig4	99	64.498	ENSPANG00000007562	LIG4	99	64.498	Papio_anubis
ENSDARG00000060620	lig4	100	77.448	ENSPKIG00000011645	lig4	99	77.448	Paramormyrops_kingsleyae
ENSDARG00000060620	lig4	100	67.215	ENSPSIG00000001504	LIG4	100	67.215	Pelodiscus_sinensis
ENSDARG00000060620	lig4	98	75.476	ENSPMGG00000013486	lig4	99	75.000	Periophthalmus_magnuspinnatus
ENSDARG00000060620	lig4	98	63.234	ENSPEMG00000000076	Lig4	99	63.234	Peromyscus_maniculatus_bairdii
ENSDARG00000060620	lig4	98	64.009	ENSPCIG00000021882	LIG4	99	64.009	Phascolarctos_cinereus
ENSDARG00000060620	lig4	100	79.496	ENSPFOG00000000797	lig4	100	80.044	Poecilia_formosa
ENSDARG00000060620	lig4	100	79.386	ENSPLAG00000001196	lig4	100	79.934	Poecilia_latipinna
ENSDARG00000060620	lig4	100	79.715	ENSPMEG00000021353	lig4	100	80.263	Poecilia_mexicana
ENSDARG00000060620	lig4	100	79.167	ENSPREG00000007323	lig4	100	79.386	Poecilia_reticulata
ENSDARG00000060620	lig4	98	63.898	ENSPPYG00000005540	LIG4	99	63.898	Pongo_abelii
ENSDARG00000060620	lig4	98	63.234	ENSPVAG00000016403	LIG4	99	63.234	Pteropus_vampyrus
ENSDARG00000060620	lig4	99	80.198	ENSPNYG00000009660	lig4	99	80.198	Pundamilia_nyererei
ENSDARG00000060620	lig4	98	85.363	ENSPNAG00000028069	LIG4	99	85.363	Pygocentrus_nattereri
ENSDARG00000060620	lig4	98	85.363	ENSPNAG00000028056	lig4	99	85.363	Pygocentrus_nattereri
ENSDARG00000060620	lig4	98	63.636	ENSRNOG00000014605	Lig4	99	63.636	Rattus_norvegicus
ENSDARG00000060620	lig4	98	63.677	ENSRBIG00000039962	LIG4	99	63.677	Rhinopithecus_bieti
ENSDARG00000060620	lig4	98	64.341	ENSRROG00000006040	LIG4	99	64.341	Rhinopithecus_roxellana
ENSDARG00000060620	lig4	98	64.080	ENSSBOG00000019029	LIG4	99	64.080	Saimiri_boliviensis_boliviensis
ENSDARG00000060620	lig4	98	61.308	ENSSHAG00000009525	LIG4	99	61.683	Sarcophilus_harrisii
ENSDARG00000060620	lig4	100	78.438	ENSSFOG00015012835	lig4	100	78.438	Scleropages_formosus
ENSDARG00000060620	lig4	100	74.697	ENSSMAG00000011267	lig4	100	74.697	Scophthalmus_maximus
ENSDARG00000060620	lig4	100	78.556	ENSSDUG00000010343	lig4	100	78.556	Seriola_dumerili
ENSDARG00000060620	lig4	100	77.133	ENSSLDG00000003239	lig4	100	77.133	Seriola_lalandi_dorsalis
ENSDARG00000060620	lig4	98	63.536	ENSSARG00000006573	LIG4	99	63.536	Sorex_araneus
ENSDARG00000060620	lig4	92	69.048	ENSSPUG00000002444	LIG4	100	69.048	Sphenodon_punctatus
ENSDARG00000060620	lig4	100	79.341	ENSSPAG00000001609	lig4	100	79.341	Stegastes_partitus
ENSDARG00000060620	lig4	98	63.263	ENSSSCG00000009540	LIG4	99	63.263	Sus_scrofa
ENSDARG00000060620	lig4	99	65.188	ENSTGUG00000010795	LIG4	99	65.188	Taeniopygia_guttata
ENSDARG00000060620	lig4	100	78.571	ENSTRUG00000009984	lig4	100	78.571	Takifugu_rubripes
ENSDARG00000060620	lig4	100	77.118	ENSTNIG00000010348	lig4	100	77.338	Tetraodon_nigroviridis
ENSDARG00000060620	lig4	98	63.858	ENSTBEG00000017741	LIG4	99	63.858	Tupaia_belangeri
ENSDARG00000060620	lig4	98	63.525	ENSTTRG00000012660	LIG4	99	63.525	Tursiops_truncatus
ENSDARG00000060620	lig4	98	63.566	ENSUAMG00000003773	LIG4	99	63.566	Ursus_americanus
ENSDARG00000060620	lig4	100	65.899	ENSXETG00000002654	lig4	100	65.899	Xenopus_tropicalis
ENSDARG00000060620	lig4	98	80.089	ENSXCOG00000017401	lig4	100	79.386	Xiphophorus_couchianus
ENSDARG00000060620	lig4	98	79.978	ENSXMAG00000015142	lig4	99	79.276	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003909	DNA ligase activity	-	IEA	Function
GO:0003910	DNA ligase (ATP) activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005958	DNA-dependent protein kinase-DNA ligase 4 complex	21873635.	IBA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0006297	nucleotide-excision repair, DNA gap filling	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	21873635.	IBA	Process
GO:0006303	double-strand break repair via nonhomologous end joining	23021549.	IMP	Process
GO:0006310	DNA recombination	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0016874	ligase activity	-	IEA	Function
GO:0032807	DNA ligase IV complex	21873635.	IBA	Component
GO:0051103	DNA ligation involved in DNA repair	-	IEA	Process
GO:0071897	DNA biosynthetic process	-	IEA	Process