EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060767 (Gene tree)
Gene ID: 565575
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 33782 bases
Position: chr2:36046126-36079907
Accession: ZDB-GENE-030131-9122
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000135427	EST1	PF10374.9	1.5e-25	1	1
ENSDARP00000080411	EST1	PF10374.9	1.6e-25	1	1
ENSDARP00000135427	EST1_DNA_bind	PF10373.9	1.8e-48	1	1
ENSDARP00000080411	EST1_DNA_bind	PF10373.9	1.9e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000171680	-	4088	-	ENSDARP00000135427	1130 (aa)	-	A0A0R4IJJ6
ENSDART00000085976	-	7632	XM_005171308	ENSDARP00000080411	1180 (aa)	XP_005171365	Q1LVF3

Gene Model

Click here to download ENSDARG00000060767's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060767's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060767	smg7	99	67.761	ENSG00000116698	SMG7	86	94.969	Homo_sapiens
ENSDARG00000060767	smg7	89	85.268	ENSAPOG00000009611	smg7	96	86.015	Acanthochromis_polyacanthus
ENSDARG00000060767	smg7	99	65.954	ENSAMEG00000002357	SMG7	100	66.496	Ailuropoda_melanoleuca
ENSDARG00000060767	smg7	97	73.405	ENSACIG00000015152	smg7	100	73.267	Amphilophus_citrinellus
ENSDARG00000060767	smg7	100	78.257	ENSAOCG00000013538	smg7	100	78.138	Amphiprion_ocellaris
ENSDARG00000060767	smg7	100	77.778	ENSAPEG00000007851	smg7	100	77.658	Amphiprion_percula
ENSDARG00000060767	smg7	100	77.148	ENSATEG00000006931	smg7	100	74.835	Anabas_testudineus
ENSDARG00000060767	smg7	99	67.246	ENSAPLG00000015811	SMG7	99	67.764	Anas_platyrhynchos
ENSDARG00000060767	smg7	99	66.969	ENSACAG00000014989	SMG7	99	67.409	Anolis_carolinensis
ENSDARG00000060767	smg7	99	67.606	ENSANAG00000028114	SMG7	84	94.839	Aotus_nancymaae
ENSDARG00000060767	smg7	100	76.694	ENSACLG00000022079	smg7	100	76.373	Astatotilapia_calliptera
ENSDARG00000060767	smg7	100	85.835	ENSAMXG00000020809	smg7	100	86.003	Astyanax_mexicanus
ENSDARG00000060767	smg7	99	67.156	ENSBTAG00000008003	SMG7	99	67.070	Bos_taurus
ENSDARG00000060767	smg7	99	67.502	ENSCJAG00000005135	SMG7	85	94.839	Callithrix_jacchus
ENSDARG00000060767	smg7	99	66.307	ENSCAFG00000013276	SMG7	97	66.058	Canis_familiaris
ENSDARG00000060767	smg7	99	67.079	ENSCAFG00020015475	SMG7	89	90.854	Canis_lupus_dingo
ENSDARG00000060767	smg7	100	66.086	ENSCHIG00000018192	SMG7	99	66.003	Capra_hircus
ENSDARG00000060767	smg7	99	67.734	ENSTSYG00000002667	SMG7	80	94.839	Carlito_syrichta
ENSDARG00000060767	smg7	99	66.556	ENSCPOG00000008906	SMG7	99	65.805	Cavia_porcellus
ENSDARG00000060767	smg7	99	67.761	ENSCCAG00000028596	SMG7	84	94.839	Cebus_capucinus
ENSDARG00000060767	smg7	99	67.848	ENSCATG00000011063	SMG7	84	94.839	Cercocebus_atys
ENSDARG00000060767	smg7	99	67.584	ENSCLAG00000010751	SMG7	99	67.675	Chinchilla_lanigera
ENSDARG00000060767	smg7	99	66.556	ENSCSAG00000012654	SMG7	97	66.473	Chlorocebus_sabaeus
ENSDARG00000060767	smg7	92	59.386	ENSCHOG00000010522	SMG7	89	63.079	Choloepus_hoffmanni
ENSDARG00000060767	smg7	99	68.760	ENSCPBG00000015724	SMG7	99	68.238	Chrysemys_picta_bellii
ENSDARG00000060767	smg7	99	67.736	ENSCANG00000015680	SMG7	84	94.839	Colobus_angolensis_palliatus
ENSDARG00000060767	smg7	99	66.551	ENSCGRG00001013705	Smg7	99	66.638	Cricetulus_griseus_chok1gshd
ENSDARG00000060767	smg7	99	66.406	ENSCGRG00000018401	Smg7	100	66.493	Cricetulus_griseus_crigri
ENSDARG00000060767	smg7	93	82.234	ENSCVAG00000011842	smg7	100	82.234	Cyprinodon_variegatus
ENSDARG00000060767	smg7	99	65.917	ENSDORG00000007331	Smg7	99	65.945	Dipodomys_ordii
ENSDARG00000060767	smg7	97	65.414	ENSETEG00000002654	SMG7	99	65.579	Echinops_telfairi
ENSDARG00000060767	smg7	99	66.972	ENSEASG00005006524	SMG7	99	67.055	Equus_asinus_asinus
ENSDARG00000060767	smg7	94	90.149	ENSECAG00000004313	SMG7	97	89.911	Equus_caballus
ENSDARG00000060767	smg7	97	65.437	ENSEEUG00000002024	SMG7	94	65.266	Erinaceus_europaeus
ENSDARG00000060767	smg7	100	79.453	ENSELUG00000010293	smg7	100	79.170	Esox_lucius
ENSDARG00000060767	smg7	99	65.489	ENSFCAG00000010900	SMG7	99	66.639	Felis_catus
ENSDARG00000060767	smg7	99	65.714	ENSFALG00000003047	SMG7	100	61.564	Ficedula_albicollis
ENSDARG00000060767	smg7	99	66.113	ENSFDAG00000012121	SMG7	99	65.993	Fukomys_damarensis
ENSDARG00000060767	smg7	100	73.917	ENSFHEG00000011073	smg7	100	73.611	Fundulus_heteroclitus
ENSDARG00000060767	smg7	89	80.226	ENSGMOG00000004916	smg7	91	80.226	Gadus_morhua
ENSDARG00000060767	smg7	99	67.389	ENSGALG00000004667	SMG7	99	68.021	Gallus_gallus
ENSDARG00000060767	smg7	100	73.762	ENSGAFG00000019000	smg7	100	73.588	Gambusia_affinis
ENSDARG00000060767	smg7	97	72.291	ENSGACG00000001634	smg7	99	68.031	Gasterosteus_aculeatus
ENSDARG00000060767	smg7	99	67.848	ENSGGOG00000002342	SMG7	82	92.500	Gorilla_gorilla
ENSDARG00000060767	smg7	100	76.694	ENSHBUG00000003726	smg7	100	76.373	Haplochromis_burtoni
ENSDARG00000060767	smg7	99	67.384	ENSHGLG00000009353	SMG7	99	67.502	Heterocephalus_glaber_female
ENSDARG00000060767	smg7	99	61.314	ENSHGLG00100004878	-	99	60.783	Heterocephalus_glaber_male
ENSDARG00000060767	smg7	99	67.298	ENSHGLG00100009637	-	99	67.416	Heterocephalus_glaber_male
ENSDARG00000060767	smg7	100	84.869	ENSIPUG00000016997	smg7	100	84.700	Ictalurus_punctatus
ENSDARG00000060767	smg7	99	66.722	ENSSTOG00000000401	SMG7	99	66.889	Ictidomys_tridecemlineatus
ENSDARG00000060767	smg7	99	66.195	ENSJJAG00000012351	Smg7	99	66.112	Jaculus_jaculus
ENSDARG00000060767	smg7	97	70.688	ENSKMAG00000004900	smg7	100	70.777	Kryptolebias_marmoratus
ENSDARG00000060767	smg7	99	76.215	ENSLBEG00000002983	smg7	99	75.652	Labrus_bergylta
ENSDARG00000060767	smg7	52	72.483	ENSLBEG00000005220	-	75	72.483	Labrus_bergylta
ENSDARG00000060767	smg7	99	70.885	ENSLACG00000000972	SMG7	99	71.216	Latimeria_chalumnae
ENSDARG00000060767	smg7	99	73.737	ENSLOCG00000002010	smg7	99	72.720	Lepisosteus_oculatus
ENSDARG00000060767	smg7	99	66.611	ENSLAFG00000008186	SMG7	99	66.528	Loxodonta_africana
ENSDARG00000060767	smg7	99	67.055	ENSMFAG00000031653	SMG7	84	94.839	Macaca_fascicularis
ENSDARG00000060767	smg7	99	67.027	ENSMMUG00000018458	SMG7	99	67.139	Macaca_mulatta
ENSDARG00000060767	smg7	99	67.848	ENSMNEG00000034798	SMG7	84	94.839	Macaca_nemestrina
ENSDARG00000060767	smg7	99	67.848	ENSMLEG00000037170	SMG7	100	67.009	Mandrillus_leucophaeus
ENSDARG00000060767	smg7	88	76.249	ENSMAMG00000018733	smg7	63	84.478	Mastacembelus_armatus
ENSDARG00000060767	smg7	100	76.777	ENSMZEG00005015247	smg7	100	76.290	Maylandia_zebra
ENSDARG00000060767	smg7	97	66.607	ENSMGAG00000001561	SMG7	99	67.537	Meleagris_gallopavo
ENSDARG00000060767	smg7	99	66.869	ENSMAUG00000019484	Smg7	99	66.782	Mesocricetus_auratus
ENSDARG00000060767	smg7	99	67.472	ENSMICG00000007145	SMG7	81	94.839	Microcebus_murinus
ENSDARG00000060767	smg7	99	66.782	ENSMOCG00000020748	Smg7	99	66.263	Microtus_ochrogaster
ENSDARG00000060767	smg7	99	72.561	ENSMMOG00000001524	smg7	98	80.612	Mola_mola
ENSDARG00000060767	smg7	92	66.978	ENSMODG00000007139	SMG7	99	66.884	Monodelphis_domestica
ENSDARG00000060767	smg7	100	76.680	ENSMALG00000000061	smg7	93	81.313	Monopterus_albus
ENSDARG00000060767	smg7	99	67.329	MGP_CAROLIEiJ_G0014704	Smg7	99	66.724	Mus_caroli
ENSDARG00000060767	smg7	99	66.724	ENSMUSG00000042772	Smg7	99	66.638	Mus_musculus
ENSDARG00000060767	smg7	99	66.811	MGP_PahariEiJ_G0027940	Smg7	99	66.724	Mus_pahari
ENSDARG00000060767	smg7	99	66.811	MGP_SPRETEiJ_G0015511	Smg7	99	66.724	Mus_spretus
ENSDARG00000060767	smg7	98	65.004	ENSMPUG00000011732	SMG7	97	66.162	Mustela_putorius_furo
ENSDARG00000060767	smg7	99	66.361	ENSMLUG00000015417	SMG7	99	66.277	Myotis_lucifugus
ENSDARG00000060767	smg7	100	66.838	ENSNGAG00000009836	Smg7	100	66.609	Nannospalax_galili
ENSDARG00000060767	smg7	98	69.965	ENSNBRG00000024343	smg7	99	69.858	Neolamprologus_brichardi
ENSDARG00000060767	smg7	99	67.934	ENSNLEG00000018018	SMG7	100	67.094	Nomascus_leucogenys
ENSDARG00000060767	smg7	71	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSDARG00000060767	smg7	96	61.478	ENSOPRG00000013942	SMG7	96	61.478	Ochotona_princeps
ENSDARG00000060767	smg7	99	67.761	ENSODEG00000010390	SMG7	99	67.675	Octodon_degus
ENSDARG00000060767	smg7	100	76.248	ENSONIG00000000277	smg7	100	75.910	Oreochromis_niloticus
ENSDARG00000060767	smg7	99	66.163	ENSOANG00000000994	SMG7	100	66.079	Ornithorhynchus_anatinus
ENSDARG00000060767	smg7	99	63.470	ENSOCUG00000005887	SMG7	92	63.553	Oryctolagus_cuniculus
ENSDARG00000060767	smg7	100	72.765	ENSORLG00000007314	smg7	100	73.305	Oryzias_latipes
ENSDARG00000060767	smg7	100	73.205	ENSORLG00020015779	smg7	100	73.746	Oryzias_latipes_hni
ENSDARG00000060767	smg7	100	73.706	ENSORLG00015012289	smg7	100	73.411	Oryzias_latipes_hsok
ENSDARG00000060767	smg7	100	73.099	ENSOMEG00000002328	smg7	100	73.389	Oryzias_melastigma
ENSDARG00000060767	smg7	97	66.094	ENSOGAG00000003107	SMG7	93	65.923	Otolemur_garnettii
ENSDARG00000060767	smg7	99	66.141	ENSOARG00000001352	SMG7	100	66.111	Ovis_aries
ENSDARG00000060767	smg7	99	67.934	ENSPPAG00000031619	SMG7	89	91.411	Pan_paniscus
ENSDARG00000060767	smg7	99	66.382	ENSPPRG00000011222	SMG7	99	67.589	Panthera_pardus
ENSDARG00000060767	smg7	97	65.570	ENSPTIG00000007242	SMG7	100	66.752	Panthera_tigris_altaica
ENSDARG00000060767	smg7	99	67.934	ENSPTRG00000001764	SMG7	84	94.839	Pan_troglodytes
ENSDARG00000060767	smg7	99	67.848	ENSPANG00000004520	SMG7	99	67.761	Papio_anubis
ENSDARG00000060767	smg7	100	74.413	ENSPKIG00000007242	smg7	100	74.077	Paramormyrops_kingsleyae
ENSDARG00000060767	smg7	99	67.306	ENSPSIG00000012201	SMG7	100	67.424	Pelodiscus_sinensis
ENSDARG00000060767	smg7	64	54.054	ENSPMGG00000021833	smg7	94	53.363	Periophthalmus_magnuspinnatus
ENSDARG00000060767	smg7	99	65.679	ENSPEMG00000011315	Smg7	99	65.592	Peromyscus_maniculatus_bairdii
ENSDARG00000060767	smg7	99	67.606	ENSPCIG00000003786	SMG7	89	94.375	Phascolarctos_cinereus
ENSDARG00000060767	smg7	100	74.148	ENSPFOG00000019219	smg7	100	73.605	Poecilia_formosa
ENSDARG00000060767	smg7	100	74.132	ENSPLAG00000001446	smg7	100	73.565	Poecilia_latipinna
ENSDARG00000060767	smg7	97	73.632	ENSPMEG00000005218	smg7	99	73.046	Poecilia_mexicana
ENSDARG00000060767	smg7	88	71.646	ENSPREG00000019039	smg7	92	71.592	Poecilia_reticulata
ENSDARG00000060767	smg7	99	67.934	ENSPPYG00000000427	SMG7	99	67.848	Pongo_abelii
ENSDARG00000060767	smg7	84	74.781	ENSPCAG00000008360	SMG7	86	74.781	Procavia_capensis
ENSDARG00000060767	smg7	99	66.638	ENSPCOG00000011996	SMG7	76	94.839	Propithecus_coquereli
ENSDARG00000060767	smg7	91	62.613	ENSPVAG00000000851	SMG7	89	62.523	Pteropus_vampyrus
ENSDARG00000060767	smg7	100	76.987	ENSPNYG00000007643	smg7	100	76.583	Pundamilia_nyererei
ENSDARG00000060767	smg7	100	86.256	ENSPNAG00000011374	smg7	98	90.404	Pygocentrus_nattereri
ENSDARG00000060767	smg7	99	66.926	ENSRNOG00000027962	Smg7	99	67.618	Rattus_norvegicus
ENSDARG00000060767	smg7	99	67.848	ENSRBIG00000036316	SMG7	100	67.009	Rhinopithecus_bieti
ENSDARG00000060767	smg7	99	67.848	ENSRROG00000035719	SMG7	100	67.009	Rhinopithecus_roxellana
ENSDARG00000060767	smg7	99	66.722	ENSSBOG00000023454	SMG7	86	94.969	Saimiri_boliviensis_boliviensis
ENSDARG00000060767	smg7	100	66.667	ENSSHAG00000013147	SMG7	99	66.955	Sarcophilus_harrisii
ENSDARG00000060767	smg7	100	78.039	ENSSFOG00015017252	smg7	99	84.896	Scleropages_formosus
ENSDARG00000060767	smg7	100	75.689	ENSSMAG00000006067	smg7	100	75.920	Scophthalmus_maximus
ENSDARG00000060767	smg7	96	85.379	ENSSDUG00000017543	smg7	100	73.503	Seriola_dumerili
ENSDARG00000060767	smg7	99	67.500	ENSSPUG00000002064	SMG7	99	66.868	Sphenodon_punctatus
ENSDARG00000060767	smg7	99	75.370	ENSSPAG00000008733	smg7	99	75.327	Stegastes_partitus
ENSDARG00000060767	smg7	99	66.805	ENSSSCG00000015558	SMG7	99	66.722	Sus_scrofa
ENSDARG00000060767	smg7	99	67.189	ENSTGUG00000003928	SMG7	100	67.823	Taeniopygia_guttata
ENSDARG00000060767	smg7	100	68.571	ENSTNIG00000002802	smg7	100	67.951	Tetraodon_nigroviridis
ENSDARG00000060767	smg7	78	68.571	ENSTBEG00000003220	SMG7	70	68.571	Tupaia_belangeri
ENSDARG00000060767	smg7	96	65.633	ENSTTRG00000014778	SMG7	94	65.547	Tursiops_truncatus
ENSDARG00000060767	smg7	96	64.425	ENSUAMG00000017473	SMG7	100	65.650	Ursus_americanus
ENSDARG00000060767	smg7	97	64.576	ENSUMAG00000016389	SMG7	100	65.751	Ursus_maritimus
ENSDARG00000060767	smg7	99	65.325	ENSVVUG00000008976	SMG7	99	66.473	Vulpes_vulpes
ENSDARG00000060767	smg7	99	61.664	ENSXETG00000012528	smg7	99	61.387	Xenopus_tropicalis
ENSDARG00000060767	smg7	100	74.087	ENSXMAG00000007123	smg7	100	73.345	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005697	telomerase holoenzyme complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0007004	telomere maintenance via telomerase	21873635.	IBA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0032210	regulation of telomere maintenance via telomerase	21873635.	IBA	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0043009	chordate embryonic development	19414594.	IMP	Process
GO:0070034	telomerase RNA binding	21873635.	IBA	Function