EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000060847 (Gene tree)
Gene ID: 567970
Gene Symbol: setd1ba
Alias: im:7156157|si:dkey-237o15.4
Full Name: SET domain containing 1B%2C a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 35882 bases
Position: chr10:41986685-42022566
Accession: ZDB-GENE-050309-289
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000080600	RRM_1	PF00076.22	1.7e-09	1	1
ENSDARP00000130529	RRM_1	PF00076.22	1.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000086165	-	5953	-	ENSDARP00000080600	1844 (aa)	-	F1Q6L6
ENSDART00000171983	-	8155	XM_005169219	ENSDARP00000130529	1844 (aa)	XP_005169276	F1Q6L6

Gene Model

Click here to download ENSDARG00000060847's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060847's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000060847	setd1ba	99	59.357	ENSACIG00000016453	setd1ba	99	59.936	Amphilophus_citrinellus
ENSDARG00000060847	setd1ba	52	65.982	ENSAOCG00000012148	setd1ba	99	61.610	Amphiprion_ocellaris
ENSDARG00000060847	setd1ba	97	55.038	ENSATEG00000021563	setd1ba	99	64.739	Anabas_testudineus
ENSDARG00000060847	setd1ba	50	52.590	ENSAPLG00000005217	SETD1B	50	53.756	Anas_platyrhynchos
ENSDARG00000060847	setd1ba	51	79.389	ENSTSYG00000033777	SETD1B	67	56.286	Carlito_syrichta
ENSDARG00000060847	setd1ba	70	81.818	ENSCATG00000035803	SETD1B	51	50.585	Cercocebus_atys
ENSDARG00000060847	setd1ba	68	67.286	ENSCANG00000023445	SETD1B	76	67.286	Colobus_angolensis_palliatus
ENSDARG00000060847	setd1ba	50	85.220	ENSGMOG00000009831	setd1ba	58	85.220	Gadus_morhua
ENSDARG00000060847	setd1ba	88	64.606	ENSGAFG00000008712	setd1ba	90	65.224	Gambusia_affinis
ENSDARG00000060847	setd1ba	74	66.667	ENSGACG00000011872	-	70	66.667	Gasterosteus_aculeatus
ENSDARG00000060847	setd1ba	86	61.299	ENSGACG00000017002	setd1ba	95	61.864	Gasterosteus_aculeatus
ENSDARG00000060847	setd1ba	96	54.720	ENSGAGG00000025013	SETD1B	73	55.259	Gopherus_agassizii
ENSDARG00000060847	setd1ba	66	38.705	ENSIPUG00000003992	-	68	39.689	Ictalurus_punctatus
ENSDARG00000060847	setd1ba	99	56.487	ENSLBEG00000020113	setd1ba	92	63.363	Labrus_bergylta
ENSDARG00000060847	setd1ba	62	81.818	ENSMLEG00000039573	SETD1B	66	55.187	Mandrillus_leucophaeus
ENSDARG00000060847	setd1ba	50	76.901	ENSODEG00000010155	SETD1B	81	50.949	Octodon_degus
ENSDARG00000060847	setd1ba	62	59.011	ENSORLG00015004156	setd1ba	81	63.908	Oryzias_latipes_hsok
ENSDARG00000060847	setd1ba	99	60.566	ENSOMEG00000002270	setd1ba	53	63.469	Oryzias_melastigma
ENSDARG00000060847	setd1ba	86	62.225	ENSPMGG00000011527	setd1ba	93	61.095	Periophthalmus_magnuspinnatus
ENSDARG00000060847	setd1ba	53	64.208	ENSPFOG00000019768	setd1ba	55	64.637	Poecilia_formosa
ENSDARG00000060847	setd1ba	53	63.933	ENSPLAG00000023459	setd1ba	55	64.335	Poecilia_latipinna
ENSDARG00000060847	setd1ba	53	64.405	ENSPMEG00000020446	setd1ba	55	64.833	Poecilia_mexicana
ENSDARG00000060847	setd1ba	53	64.447	ENSPREG00000011589	setd1ba	55	64.244	Poecilia_reticulata
ENSDARG00000060847	setd1ba	63	69.180	ENSPCOG00000020896	SETD1A	50	69.281	Propithecus_coquereli
ENSDARG00000060847	setd1ba	99	61.758	ENSPNYG00000009484	setd1ba	56	66.080	Pundamilia_nyererei
ENSDARG00000060847	setd1ba	93	66.815	ENSPNAG00000016011	setd1ba	99	67.373	Pygocentrus_nattereri
ENSDARG00000060847	setd1ba	68	74.462	ENSSFOG00015004814	SETD1B	78	74.462	Scleropages_formosus
ENSDARG00000060847	setd1ba	91	67.090	ENSSDUG00000018313	setd1ba	99	63.041	Seriola_dumerili
ENSDARG00000060847	setd1ba	67	80.675	ENSSSCG00000009806	SETD1B	90	58.211	Sus_scrofa
ENSDARG00000060847	setd1ba	63	79.511	ENSUAMG00000008729	SETD1B	63	79.511	Ursus_americanus
ENSDARG00000060847	setd1ba	53	62.403	ENSXCOG00000004451	setd1ba	56	62.175	Xiphophorus_couchianus
ENSDARG00000060847	setd1ba	52	63.494	ENSXMAG00000014097	setd1ba	55	63.063	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002244	hematopoietic progenitor cell differentiation	24240475.	IMP	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0016607	nuclear speck	-	IEA	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0018024	histone-lysine N-methyltransferase activity	-	IEA	Function
GO:0032259	methylation	-	IEA	Process
GO:0048188	Set1C/COMPASS complex	-	IEA	Component
GO:0051568	histone H3-K4 methylation	-	IEA	Process