EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000060862 (Gene tree)
Gene ID
565841
Gene Symbol
atxn1b
Alias
atxn1|atxn1a
Full Name
ataxin 1b
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Minus strand
Length
13204 bases
Position
chr16:25555309-25568512
Accession
ZDB-GENE-061218-2
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000124202AXHPF08517.121.9e-4111
ENSDARP00000152099AXHPF08517.121.9e-4111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000189642-2682XM_689102ENSDARP00000152099827 (aa)XP_694194E7F6Z5
ENSDART00000149411-8697XM_005158159ENSDARP00000124202827 (aa)XP_005158216E7F6Z5
Gene Model
Click here to download ENSDARG00000060862's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000060862's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000060862atxn1b9938.095ENSDARG00000061687atxn1a9938.801
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000060862atxn1b9935.249ENSG00000124788ATXN19935.645Homo_sapiens
ENSDARG00000060862atxn1b9943.434ENSAPOG00000005003atxn1b9944.220Acanthochromis_polyacanthus
ENSDARG00000060862atxn1b9938.945ENSAPOG00000018662atxn1a9939.888Acanthochromis_polyacanthus
ENSDARG00000060862atxn1b9935.011ENSAMEG00000004299ATXN19936.114Ailuropoda_melanoleuca
ENSDARG00000060862atxn1b8439.608ENSACIG00000016088atxn1a9240.849Amphilophus_citrinellus
ENSDARG00000060862atxn1b9940.302ENSACIG00000014661atxn1b9840.416Amphilophus_citrinellus
ENSDARG00000060862atxn1b9942.123ENSAOCG00000019715atxn1b9942.609Amphiprion_ocellaris
ENSDARG00000060862atxn1b9939.688ENSAOCG00000015796atxn1a9939.844Amphiprion_ocellaris
ENSDARG00000060862atxn1b9939.597ENSAPEG00000011313atxn1a9939.754Amphiprion_percula
ENSDARG00000060862atxn1b9942.441ENSAPEG00000022436atxn1b9943.159Amphiprion_percula
ENSDARG00000060862atxn1b9939.022ENSATEG00000013601atxn1a9939.414Anabas_testudineus
ENSDARG00000060862atxn1b9943.478ENSATEG00000002982atxn1b9943.207Anabas_testudineus
ENSDARG00000060862atxn1b9935.618ENSACAG00000003919ATXN19935.561Anolis_carolinensis
ENSDARG00000060862atxn1b9935.857ENSANAG00000025206-9536.374Aotus_nancymaae
ENSDARG00000060862atxn1b7933.148ENSANAG00000025424-9633.519Aotus_nancymaae
ENSDARG00000060862atxn1b9940.204ENSACLG00000015429atxn1a9939.887Astatotilapia_calliptera
ENSDARG00000060862atxn1b9943.430ENSACLG00000005697atxn1b9943.449Astatotilapia_calliptera
ENSDARG00000060862atxn1b9959.324ENSAMXG00000017432atxn1b9859.375Astyanax_mexicanus
ENSDARG00000060862atxn1b9937.705ENSAMXG00000042368atxn1a9939.150Astyanax_mexicanus
ENSDARG00000060862atxn1b9934.314ENSBTAG00000019675ATXN19934.858Bos_taurus
ENSDARG00000060862atxn1b9935.969ENSCJAG00000006563ATXN19336.485Callithrix_jacchus
ENSDARG00000060862atxn1b9935.738ENSCAFG00000009934ATXN19935.843Canis_familiaris
ENSDARG00000060862atxn1b10035.261ENSCAFG00020012647ATXN19535.667Canis_lupus_dingo
ENSDARG00000060862atxn1b9934.490ENSCHIG00000018697ATXN19935.880Capra_hircus
ENSDARG00000060862atxn1b5151.880ENSTSYG00000000858ATXN18752.416Carlito_syrichta
ENSDARG00000060862atxn1b9935.667ENSCAPG00000013095ATXN19936.222Cavia_aperea
ENSDARG00000060862atxn1b9935.874ENSCPOG00000022869ATXN19936.435Cavia_porcellus
ENSDARG00000060862atxn1b9936.737ENSCCAG00000018590ATXN19936.114Cebus_capucinus
ENSDARG00000060862atxn1b9935.943ENSCATG00000042777ATXN19936.233Cercocebus_atys
ENSDARG00000060862atxn1b9935.099ENSCLAG00000002212ATXN19935.650Chinchilla_lanigera
ENSDARG00000060862atxn1b9936.022ENSCSAG00000007589ATXN19936.313Chlorocebus_sabaeus
ENSDARG00000060862atxn1b9935.897ENSCPBG00000022373ATXN19936.161Chrysemys_picta_bellii
ENSDARG00000060862atxn1b9936.071ENSCANG00000033673ATXN19936.364Colobus_angolensis_palliatus
ENSDARG00000060862atxn1b9936.040ENSCGRG00001022108Atxn19936.040Cricetulus_griseus_chok1gshd
ENSDARG00000060862atxn1b9936.364ENSCGRG00000014084Atxn19936.364Cricetulus_griseus_crigri
ENSDARG00000060862atxn1b9942.165ENSCSEG00000004666atxn1b9942.390Cynoglossus_semilaevis
ENSDARG00000060862atxn1b9937.795ENSCSEG00000017647atxn1a9939.033Cynoglossus_semilaevis
ENSDARG00000060862atxn1b9939.091ENSCVAG00000023240atxn1a9939.435Cyprinodon_variegatus
ENSDARG00000060862atxn1b9941.993ENSCVAG00000010945atxn1b9941.275Cyprinodon_variegatus
ENSDARG00000060862atxn1b5841.684ENSDNOG00000048471ATXN16642.653Dasypus_novemcinctus
ENSDARG00000060862atxn1b9934.956ENSDORG00000005940Atxn19935.189Dipodomys_ordii
ENSDARG00000060862atxn1b8339.791ENSETEG00000003815ATXN18641.709Echinops_telfairi
ENSDARG00000060862atxn1b8437.224ENSEASG00005011799ATXN19935.691Equus_asinus_asinus
ENSDARG00000060862atxn1b8437.139ENSECAG00000009251ATXN19935.502Equus_caballus
ENSDARG00000060862atxn1b9936.789ENSEEUG00000007120ATXN19936.778Erinaceus_europaeus
ENSDARG00000060862atxn1b9937.305ENSELUG00000003691atxn1a9637.889Esox_lucius
ENSDARG00000060862atxn1b9342.817ENSELUG00000001311atxn1b7642.956Esox_lucius
ENSDARG00000060862atxn1b9936.211ENSFCAG00000011298ATXN19936.707Felis_catus
ENSDARG00000060862atxn1b9936.866ENSFALG00000013400ATXN19937.204Ficedula_albicollis
ENSDARG00000060862atxn1b8643.681ENSFDAG00000020905ATXN19935.164Fukomys_damarensis
ENSDARG00000060862atxn1b9941.824ENSFHEG00000017226atxn1b9941.307Fundulus_heteroclitus
ENSDARG00000060862atxn1b9937.542ENSFHEG00000019419atxn1a9937.149Fundulus_heteroclitus
ENSDARG00000060862atxn1b9939.721ENSGMOG00000013508atxn1b9940.304Gadus_morhua
ENSDARG00000060862atxn1b9936.230ENSGALG00000012709ATXN19936.343Gallus_gallus
ENSDARG00000060862atxn1b8639.359ENSGAFG00000010544atxn1a9938.180Gambusia_affinis
ENSDARG00000060862atxn1b9941.639ENSGAFG00000007295atxn1b9942.411Gambusia_affinis
ENSDARG00000060862atxn1b9941.211ENSGACG00000008747atxn1b9941.647Gasterosteus_aculeatus
ENSDARG00000060862atxn1b9937.515ENSGACG00000003472atxn1a9937.367Gasterosteus_aculeatus
ENSDARG00000060862atxn1b9936.009ENSGAGG00000006868ATXN19936.303Gopherus_agassizii
ENSDARG00000060862atxn1b9935.449ENSGGOG00000004169ATXN19935.847Gorilla_gorilla
ENSDARG00000060862atxn1b9943.318ENSHBUG00000016081atxn1b9943.449Haplochromis_burtoni
ENSDARG00000060862atxn1b9939.955ENSHBUG00000002508atxn1a9939.729Haplochromis_burtoni
ENSDARG00000060862atxn1b9936.344ENSHGLG00000009360ATXN19936.577Heterocephalus_glaber_female
ENSDARG00000060862atxn1b9936.233ENSHGLG00100003038ATXN19936.577Heterocephalus_glaber_male
ENSDARG00000060862atxn1b9942.235ENSHCOG00000014835atxn1b9943.126Hippocampus_comes
ENSDARG00000060862atxn1b9938.870ENSIPUG00000001402atxn19938.780Ictalurus_punctatus
ENSDARG00000060862atxn1b9959.264ENSIPUG00000002088atxn1b9959.620Ictalurus_punctatus
ENSDARG00000060862atxn1b9934.816ENSSTOG00000025423ATXN19935.586Ictidomys_tridecemlineatus
ENSDARG00000060862atxn1b9936.682ENSJJAG00000000377Atxn19936.979Jaculus_jaculus
ENSDARG00000060862atxn1b9936.251ENSKMAG00000007216atxn1a9936.526Kryptolebias_marmoratus
ENSDARG00000060862atxn1b9941.788ENSKMAG00000013507atxn1b9941.741Kryptolebias_marmoratus
ENSDARG00000060862atxn1b9941.791ENSLBEG00000024264atxn1b9941.796Labrus_bergylta
ENSDARG00000060862atxn1b9938.330ENSLBEG00000024388atxn1a9939.726Labrus_bergylta
ENSDARG00000060862atxn1b9937.415ENSLACG00000005371ATXN19936.932Latimeria_chalumnae
ENSDARG00000060862atxn1b9943.743ENSLOCG00000002910atxn1a9943.991Lepisosteus_oculatus
ENSDARG00000060862atxn1b9936.163ENSLAFG00000015231ATXN19935.934Loxodonta_africana
ENSDARG00000060862atxn1b9935.864ENSMFAG00000032779ATXN19936.154Macaca_fascicularis
ENSDARG00000060862atxn1b9935.864ENSMMUG00000002940ATXN19936.154Macaca_mulatta
ENSDARG00000060862atxn1b9935.943ENSMNEG00000036667ATXN19936.233Macaca_nemestrina
ENSDARG00000060862atxn1b7638.947ENSMLEG00000040480ATXN18938.599Mandrillus_leucophaeus
ENSDARG00000060862atxn1b9938.989ENSMAMG00000014004atxn1a9940.090Mastacembelus_armatus
ENSDARG00000060862atxn1b9943.695ENSMAMG00000011503atxn1b9943.798Mastacembelus_armatus
ENSDARG00000060862atxn1b9940.204ENSMZEG00005003602atxn1a9939.887Maylandia_zebra
ENSDARG00000060862atxn1b9943.318ENSMZEG00005015064atxn1b9943.449Maylandia_zebra
ENSDARG00000060862atxn1b9935.553ENSMGAG00000003028ATXN19935.666Meleagris_gallopavo
ENSDARG00000060862atxn1b9935.787ENSMAUG00000011491Atxn19935.674Mesocricetus_auratus
ENSDARG00000060862atxn1b9935.248ENSMICG00000011875ATXN19936.913Microcebus_murinus
ENSDARG00000060862atxn1b9935.385ENSMOCG00000001527Atxn19936.027Microtus_ochrogaster
ENSDARG00000060862atxn1b9943.860ENSMMOG00000002884atxn1b9849.451Mola_mola
ENSDARG00000060862atxn1b9938.769ENSMMOG00000018593atxn1a9939.569Mola_mola
ENSDARG00000060862atxn1b9936.454ENSMODG00000010827ATXN19936.575Monodelphis_domestica
ENSDARG00000060862atxn1b9938.358ENSMALG00000005209atxn1a9939.370Monopterus_albus
ENSDARG00000060862atxn1b9942.714ENSMALG00000012137atxn1b9942.572Monopterus_albus
ENSDARG00000060862atxn1b9936.005MGP_CAROLIEiJ_G0018479Atxn19936.158Mus_caroli
ENSDARG00000060862atxn1b9936.005ENSMUSG00000046876Atxn19936.158Mus_musculus
ENSDARG00000060862atxn1b9936.629MGP_PahariEiJ_G0019546Atxn19936.629Mus_pahari
ENSDARG00000060862atxn1b9936.045MGP_SPRETEiJ_G0019357Atxn19936.158Mus_spretus
ENSDARG00000060862atxn1b9935.753ENSMPUG00000005398ATXN19936.744Mustela_putorius_furo
ENSDARG00000060862atxn1b9935.391ENSMLUG00000000896ATXN19936.282Myotis_lucifugus
ENSDARG00000060862atxn1b9935.430ENSNGAG00000020481Atxn19936.067Nannospalax_galili
ENSDARG00000060862atxn1b9939.887ENSNBRG00000013216atxn1a9939.684Neolamprologus_brichardi
ENSDARG00000060862atxn1b9942.874ENSNBRG00000014776atxn1b9842.442Neolamprologus_brichardi
ENSDARG00000060862atxn1b9935.580ENSNLEG00000001064ATXN19935.982Nomascus_leucogenys
ENSDARG00000060862atxn1b9935.135ENSMEUG00000014680ATXN19635.175Notamacropus_eugenii
ENSDARG00000060862atxn1b9933.333ENSOPRG00000004813ATXN19934.494Ochotona_princeps
ENSDARG00000060862atxn1b9935.340ENSODEG00000006297ATXN19935.412Octodon_degus
ENSDARG00000060862atxn1b9943.743ENSONIG00000003094atxn1b9943.888Oreochromis_niloticus
ENSDARG00000060862atxn1b9933.956ENSOCUG00000015360ATXN19934.944Oryctolagus_cuniculus
ENSDARG00000060862atxn1b9941.547ENSORLG00000008288atxn1b9941.105Oryzias_latipes
ENSDARG00000060862atxn1b9939.216ENSORLG00000013003atxn1a9938.276Oryzias_latipes
ENSDARG00000060862atxn1b9939.245ENSORLG00020006722atxn1a9939.016Oryzias_latipes_hni
ENSDARG00000060862atxn1b9941.295ENSORLG00020013514atxn1b9942.117Oryzias_latipes_hni
ENSDARG00000060862atxn1b9939.701ENSORLG00015014668atxn1a9939.564Oryzias_latipes_hsok
ENSDARG00000060862atxn1b9940.773ENSORLG00015019876atxn1b9940.552Oryzias_latipes_hsok
ENSDARG00000060862atxn1b9941.889ENSOMEG00000003259atxn1b9942.441Oryzias_melastigma
ENSDARG00000060862atxn1b9936.921ENSOMEG00000012883atxn1a9838.787Oryzias_melastigma
ENSDARG00000060862atxn1b9936.049ENSOGAG00000028623ATXN110036.596Otolemur_garnettii
ENSDARG00000060862atxn1b9935.256ENSPPAG00000028993ATXN19935.652Pan_paniscus
ENSDARG00000060862atxn1b9937.519ENSPPRG00000004547ATXN19437.069Panthera_pardus
ENSDARG00000060862atxn1b9935.371ENSPTRG00000039250ATXN19935.769Pan_troglodytes
ENSDARG00000060862atxn1b9935.943ENSPANG00000024249ATXN19936.203Papio_anubis
ENSDARG00000060862atxn1b9942.303ENSPKIG00000018323atxn1b9942.338Paramormyrops_kingsleyae
ENSDARG00000060862atxn1b9940.323ENSPKIG00000003054atxn1a9940.783Paramormyrops_kingsleyae
ENSDARG00000060862atxn1b7632.345ENSPSIG00000007158ATXN19232.720Pelodiscus_sinensis
ENSDARG00000060862atxn1b7240.228ENSPMGG00000022926atxn1a7241.138Periophthalmus_magnuspinnatus
ENSDARG00000060862atxn1b9935.249ENSPEMG00000014930Atxn19935.892Peromyscus_maniculatus_bairdii
ENSDARG00000060862atxn1b9937.058ENSPCIG00000019413ATXN19937.029Phascolarctos_cinereus
ENSDARG00000060862atxn1b9937.736ENSPFOG00000014422atxn1a9937.500Poecilia_formosa
ENSDARG00000060862atxn1b9937.156ENSPLAG00000018978atxn1a9937.172Poecilia_latipinna
ENSDARG00000060862atxn1b9942.698ENSPLAG00000018703atxn1b9942.303Poecilia_latipinna
ENSDARG00000060862atxn1b9942.200ENSPMEG00000023723atxn1b9942.889Poecilia_mexicana
ENSDARG00000060862atxn1b9936.906ENSPMEG00000002647atxn1a9937.348Poecilia_mexicana
ENSDARG00000060862atxn1b9942.147ENSPREG00000020308atxn1b9942.570Poecilia_reticulata
ENSDARG00000060862atxn1b9937.598ENSPREG00000008333atxn1a9937.360Poecilia_reticulata
ENSDARG00000060862atxn1b9935.231ENSPPYG00000016254ATXN19935.800Pongo_abelii
ENSDARG00000060862atxn1b6346.429ENSPCAG00000008196ATXN16046.429Procavia_capensis
ENSDARG00000060862atxn1b9935.874ENSPCOG00000013612ATXN19937.248Propithecus_coquereli
ENSDARG00000060862atxn1b9337.313ENSPVAG00000016937ATXN18337.664Pteropus_vampyrus
ENSDARG00000060862atxn1b9939.524ENSPNYG00000011920atxn1a9938.782Pundamilia_nyererei
ENSDARG00000060862atxn1b9943.107ENSPNYG00000017095atxn1b9842.558Pundamilia_nyererei
ENSDARG00000060862atxn1b9939.631ENSPNAG00000010587atxn1a9939.588Pygocentrus_nattereri
ENSDARG00000060862atxn1b9960.333ENSPNAG00000001226atxn1b9960.570Pygocentrus_nattereri
ENSDARG00000060862atxn1b9935.903ENSRNOG00000016998Atxn19936.445Rattus_norvegicus
ENSDARG00000060862atxn1b9935.456ENSRBIG00000028213ATXN19935.965Rhinopithecus_bieti
ENSDARG00000060862atxn1b9935.651ENSRROG00000032751ATXN19936.273Rhinopithecus_roxellana
ENSDARG00000060862atxn1b9935.556ENSSBOG00000017381-9936.293Saimiri_boliviensis_boliviensis
ENSDARG00000060862atxn1b7630.219ENSSBOG00000030307-8830.511Saimiri_boliviensis_boliviensis
ENSDARG00000060862atxn1b9943.216ENSSFOG00015000179atxn1b9942.938Scleropages_formosus
ENSDARG00000060862atxn1b9940.534ENSSFOG00015005189atxn19941.618Scleropages_formosus
ENSDARG00000060862atxn1b9942.175ENSSMAG00000019621atxn1b9942.793Scophthalmus_maximus
ENSDARG00000060862atxn1b9937.284ENSSMAG00000007731atxn1a9438.933Scophthalmus_maximus
ENSDARG00000060862atxn1b9939.665ENSSDUG00000011376atxn1a9940.580Seriola_dumerili
ENSDARG00000060862atxn1b9942.889ENSSDUG00000006990atxn1b9943.951Seriola_dumerili
ENSDARG00000060862atxn1b9942.985ENSSLDG00000016306atxn1b9943.667Seriola_lalandi_dorsalis
ENSDARG00000060862atxn1b9939.553ENSSLDG00000013505atxn1a9940.468Seriola_lalandi_dorsalis
ENSDARG00000060862atxn1b9936.569ENSSPUG00000016650ATXN19936.866Sphenodon_punctatus
ENSDARG00000060862atxn1b9938.401ENSSPAG00000019849atxn1a9939.821Stegastes_partitus
ENSDARG00000060862atxn1b9943.955ENSSPAG00000003388atxn1b9944.919Stegastes_partitus
ENSDARG00000060862atxn1b9935.526ENSSSCG00000001065ATXN19935.509Sus_scrofa
ENSDARG00000060862atxn1b9934.881ENSTGUG00000005986ATXN19935.294Taeniopygia_guttata
ENSDARG00000060862atxn1b9940.853ENSTRUG00000024789atxn1b9941.183Takifugu_rubripes
ENSDARG00000060862atxn1b9937.923ENSTRUG00000014645atxn1a9939.567Takifugu_rubripes
ENSDARG00000060862atxn1b9941.913ENSTNIG00000018398atxn1b9941.600Tetraodon_nigroviridis
ENSDARG00000060862atxn1b9939.744ENSTNIG00000005089atxn1a9938.940Tetraodon_nigroviridis
ENSDARG00000060862atxn1b9935.466ENSTTRG00000014678ATXN19635.546Tursiops_truncatus
ENSDARG00000060862atxn1b9934.797ENSUAMG00000004064ATXN19935.903Ursus_americanus
ENSDARG00000060862atxn1b5540.787ENSUMAG00000017635-9839.360Ursus_maritimus
ENSDARG00000060862atxn1b9935.667ENSVVUG00000003386ATXN19935.818Vulpes_vulpes
ENSDARG00000060862atxn1b9935.762ENSXETG00000014184atxn19935.618Xenopus_tropicalis
ENSDARG00000060862atxn1b9941.238ENSXCOG00000019714atxn1b9841.387Xiphophorus_couchianus
ENSDARG00000060862atxn1b9937.528ENSXCOG00000020061atxn1a9936.854Xiphophorus_couchianus
ENSDARG00000060862atxn1b9250.562ENSXMAG00000014270atxn1b9942.053Xiphophorus_maculatus
ENSDARG00000060862atxn1b9937.318ENSXMAG00000003615atxn1a9937.710Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II21873635.IBAProcess
GO:0003723RNA binding-IEAFunction
GO:0005515protein binding21873635.IBAFunction
GO:0005634nucleus19085187.IDAComponent
GO:0005654nucleoplasm21873635.IBAComponent
GO:0005730nucleolus21873635.IBAComponent
GO:0007420brain development21873635.IBAProcess
GO:0007612learning21873635.IBAProcess
GO:0007613memory21873635.IBAProcess
GO:0008022protein C-terminus binding21873635.IBAFunction
GO:0008266poly(U) RNA binding21873635.IBAFunction
GO:0035176social behavior21873635.IBAProcess
GO:0042802identical protein binding21873635.IBAFunction
GO:0043621protein self-association21873635.IBAFunction
GO:0048286lung alveolus development21873635.IBAProcess

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