EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000061169 (Gene tree)
Gene ID: 568156
Gene Symbol: larp1b
Alias: fc76b04|wu:fc76b04
Full Name: La ribonucleoprotein domain family%2C member 1B
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 48850 bases
Position: chr17:26753967-26802816
Accession: ZDB-GENE-030131-4154
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000007794	La	PF05383.17	5e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000025096	-	5067	XM_005158557	ENSDARP00000007794	1076 (aa)	XP_005158614	F1Q931
ENSDART00000154921	-	1725	-	ENSDARP00000128243	518 (aa)	-	X1WDE4

Gene Model

Click here to download ENSDARG00000061169's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000061169's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000061169	larp1b	84	54.669	ENSDARG00000101722	larp1	94	53.830

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000061169	larp1b	85	52.324	ENSG00000138709	LARP1B	97	53.564	Homo_sapiens
ENSDARG00000061169	larp1b	92	64.770	ENSAPOG00000020101	larp1b	98	62.885	Acanthochromis_polyacanthus
ENSDARG00000061169	larp1b	95	61.059	ENSACIG00000023890	larp1b	98	61.069	Amphilophus_citrinellus
ENSDARG00000061169	larp1b	84	63.215	ENSAOCG00000014268	larp1b	98	62.284	Amphiprion_ocellaris
ENSDARG00000061169	larp1b	92	65.144	ENSAPEG00000004126	larp1b	99	63.058	Amphiprion_percula
ENSDARG00000061169	larp1b	93	62.984	ENSATEG00000017849	larp1b	99	62.195	Anabas_testudineus
ENSDARG00000061169	larp1b	68	58.885	ENSAPLG00000010129	LARP1B	100	52.193	Anas_platyrhynchos
ENSDARG00000061169	larp1b	80	55.567	ENSACAG00000011338	LARP1B	94	54.565	Anolis_carolinensis
ENSDARG00000061169	larp1b	59	53.947	ENSANAG00000034618	LARP1B	75	54.071	Aotus_nancymaae
ENSDARG00000061169	larp1b	85	62.602	ENSACLG00000011948	larp1b	86	67.339	Astatotilapia_calliptera
ENSDARG00000061169	larp1b	95	69.515	ENSAMXG00000006805	larp1b	97	69.082	Astyanax_mexicanus
ENSDARG00000061169	larp1b	83	54.898	ENSBTAG00000012135	LARP1B	95	48.113	Bos_taurus
ENSDARG00000061169	larp1b	79	54.874	ENSCJAG00000003338	LARP1B	99	54.525	Callithrix_jacchus
ENSDARG00000061169	larp1b	80	59.450	ENSCAFG00000003831	LARP1B	100	57.816	Canis_familiaris
ENSDARG00000061169	larp1b	79	56.579	ENSCAFG00020018899	LARP1B	96	55.422	Canis_lupus_dingo
ENSDARG00000061169	larp1b	79	56.129	ENSCHIG00000023144	LARP1B	97	55.442	Capra_hircus
ENSDARG00000061169	larp1b	79	55.027	ENSCCAG00000021948	LARP1B	98	53.714	Cebus_capucinus
ENSDARG00000061169	larp1b	79	53.355	ENSCATG00000013541	LARP1B	98	52.155	Cercocebus_atys
ENSDARG00000061169	larp1b	79	54.477	ENSCSAG00000003582	LARP1B	98	53.598	Chlorocebus_sabaeus
ENSDARG00000061169	larp1b	79	52.137	ENSCHOG00000005354	LARP1B	83	56.798	Choloepus_hoffmanni
ENSDARG00000061169	larp1b	88	54.183	ENSCPBG00000017480	LARP1B	95	52.437	Chrysemys_picta_bellii
ENSDARG00000061169	larp1b	79	55.211	ENSCANG00000026958	LARP1B	98	53.991	Colobus_angolensis_palliatus
ENSDARG00000061169	larp1b	85	60.360	ENSCSEG00000013519	larp1b	82	66.442	Cynoglossus_semilaevis
ENSDARG00000061169	larp1b	92	62.293	ENSCVAG00000005046	larp1b	91	68.240	Cyprinodon_variegatus
ENSDARG00000061169	larp1b	60	53.991	ENSETEG00000012497	LARP1B	72	52.907	Echinops_telfairi
ENSDARG00000061169	larp1b	86	43.083	ENSEBUG00000003668	larp1b	71	49.128	Eptatretus_burgeri
ENSDARG00000061169	larp1b	81	54.062	ENSEASG00005018106	LARP1B	99	53.491	Equus_asinus_asinus
ENSDARG00000061169	larp1b	88	52.500	ENSECAG00000001088	LARP1B	90	51.547	Equus_caballus
ENSDARG00000061169	larp1b	74	63.439	ENSELUG00000023774	larp1b	99	56.611	Esox_lucius
ENSDARG00000061169	larp1b	82	52.604	ENSFALG00000008098	LARP1B	99	50.784	Ficedula_albicollis
ENSDARG00000061169	larp1b	95	62.846	ENSFHEG00000010264	larp1b	96	61.987	Fundulus_heteroclitus
ENSDARG00000061169	larp1b	86	67.081	ENSGMOG00000005207	larp1b	86	57.547	Gadus_morhua
ENSDARG00000061169	larp1b	83	53.814	ENSGALG00000010207	LARP1B	91	52.440	Gallus_gallus
ENSDARG00000061169	larp1b	81	70.319	ENSGAFG00000012012	larp1b	93	68.000	Gambusia_affinis
ENSDARG00000061169	larp1b	94	54.801	ENSGACG00000004609	larp1b	98	55.122	Gasterosteus_aculeatus
ENSDARG00000061169	larp1b	86	55.104	ENSGAGG00000017209	LARP1B	92	53.816	Gopherus_agassizii
ENSDARG00000061169	larp1b	78	54.447	ENSGGOG00000015900	LARP1B	97	53.456	Gorilla_gorilla
ENSDARG00000061169	larp1b	86	66.490	ENSHBUG00000009730	larp1b	93	64.837	Haplochromis_burtoni
ENSDARG00000061169	larp1b	64	69.429	ENSHCOG00000000918	larp1b	96	68.143	Hippocampus_comes
ENSDARG00000061169	larp1b	99	70.018	ENSIPUG00000012138	larp1b	99	69.927	Ictalurus_punctatus
ENSDARG00000061169	larp1b	88	64.405	ENSKMAG00000011589	larp1b	98	61.227	Kryptolebias_marmoratus
ENSDARG00000061169	larp1b	92	64.782	ENSLBEG00000005655	larp1b	98	61.407	Labrus_bergylta
ENSDARG00000061169	larp1b	90	58.012	ENSLACG00000015247	LARP1B	93	56.467	Latimeria_chalumnae
ENSDARG00000061169	larp1b	73	64.439	ENSLOCG00000010684	larp1b	80	62.802	Lepisosteus_oculatus
ENSDARG00000061169	larp1b	79	54.545	ENSMFAG00000002218	LARP1B	98	53.341	Macaca_fascicularis
ENSDARG00000061169	larp1b	79	54.654	ENSMMUG00000021347	LARP1B	98	53.448	Macaca_mulatta
ENSDARG00000061169	larp1b	79	52.483	ENSMNEG00000030406	LARP1B	81	59.456	Macaca_nemestrina
ENSDARG00000061169	larp1b	79	55.217	ENSMLEG00000009306	LARP1B	98	54.486	Mandrillus_leucophaeus
ENSDARG00000061169	larp1b	89	66.941	ENSMAMG00000000081	larp1b	95	66.082	Mastacembelus_armatus
ENSDARG00000061169	larp1b	65	68.207	ENSMZEG00005002545	larp1b	98	67.427	Maylandia_zebra
ENSDARG00000061169	larp1b	78	49.837	ENSMGAG00000004809	LARP1B	99	49.293	Meleagris_gallopavo
ENSDARG00000061169	larp1b	79	56.612	ENSMICG00000036111	LARP1B	98	55.604	Microcebus_murinus
ENSDARG00000061169	larp1b	84	53.945	ENSMODG00000012300	LARP1B	89	52.019	Monodelphis_domestica
ENSDARG00000061169	larp1b	93	64.078	ENSMALG00000003638	larp1b	99	62.621	Monopterus_albus
ENSDARG00000061169	larp1b	85	54.842	ENSMPUG00000017365	LARP1B	90	52.157	Mustela_putorius_furo
ENSDARG00000061169	larp1b	80	54.947	ENSMLUG00000010229	LARP1B	99	53.319	Myotis_lucifugus
ENSDARG00000061169	larp1b	78	65.113	ENSNBRG00000023846	larp1b	92	63.590	Neolamprologus_brichardi
ENSDARG00000061169	larp1b	78	53.796	ENSNLEG00000013819	LARP1B	97	52.859	Nomascus_leucogenys
ENSDARG00000061169	larp1b	62	58.083	ENSMEUG00000010308	LARP1B	74	56.652	Notamacropus_eugenii
ENSDARG00000061169	larp1b	69	53.316	ENSOPRG00000005478	LARP1B	82	52.720	Ochotona_princeps
ENSDARG00000061169	larp1b	83	60.362	ENSONIG00000012386	larp1b	99	59.091	Oreochromis_niloticus
ENSDARG00000061169	larp1b	82	53.454	ENSOCUG00000013330	LARP1B	99	53.241	Oryctolagus_cuniculus
ENSDARG00000061169	larp1b	92	61.825	ENSORLG00000017954	larp1b	99	60.646	Oryzias_latipes
ENSDARG00000061169	larp1b	95	57.601	ENSORLG00020013081	larp1b	99	57.699	Oryzias_latipes_hni
ENSDARG00000061169	larp1b	95	60.837	ENSORLG00015009580	larp1b	99	60.566	Oryzias_latipes_hsok
ENSDARG00000061169	larp1b	90	63.481	ENSOMEG00000004210	larp1b	94	62.926	Oryzias_melastigma
ENSDARG00000061169	larp1b	79	56.674	ENSOGAG00000005771	LARP1B	100	54.396	Otolemur_garnettii
ENSDARG00000061169	larp1b	79	55.520	ENSOARG00000015300	LARP1B	98	53.247	Ovis_aries
ENSDARG00000061169	larp1b	78	54.252	ENSPPAG00000030439	LARP1B	97	53.564	Pan_paniscus
ENSDARG00000061169	larp1b	78	54.447	ENSPTRG00000016437	LARP1B	97	53.564	Pan_troglodytes
ENSDARG00000061169	larp1b	79	54.545	ENSPANG00000012488	LARP1B	98	53.341	Papio_anubis
ENSDARG00000061169	larp1b	85	55.187	ENSPKIG00000014360	larp1b	97	53.904	Paramormyrops_kingsleyae
ENSDARG00000061169	larp1b	82	56.362	ENSPSIG00000012885	LARP1B	99	54.574	Pelodiscus_sinensis
ENSDARG00000061169	larp1b	78	62.396	ENSPMGG00000007207	larp1b	91	64.232	Periophthalmus_magnuspinnatus
ENSDARG00000061169	larp1b	61	55.820	ENSPMAG00000002700	larp1b	99	48.185	Petromyzon_marinus
ENSDARG00000061169	larp1b	67	69.717	ENSPCIG00000026516	LARP1B	95	60.268	Phascolarctos_cinereus
ENSDARG00000061169	larp1b	59	52.999	ENSPFOG00000022837	-	99	52.162	Poecilia_formosa
ENSDARG00000061169	larp1b	96	57.996	ENSPFOG00000019519	larp1b	99	57.821	Poecilia_formosa
ENSDARG00000061169	larp1b	96	59.946	ENSPLAG00000007115	larp1b	99	58.866	Poecilia_latipinna
ENSDARG00000061169	larp1b	96	62.488	ENSPMEG00000001224	larp1b	99	62.300	Poecilia_mexicana
ENSDARG00000061169	larp1b	80	54.292	ENSPCAG00000007546	LARP1B	99	52.935	Procavia_capensis
ENSDARG00000061169	larp1b	76	62.903	ENSPCOG00000021874	LARP1B	97	62.903	Propithecus_coquereli
ENSDARG00000061169	larp1b	81	52.207	ENSPVAG00000005373	LARP1B	100	51.130	Pteropus_vampyrus
ENSDARG00000061169	larp1b	65	68.232	ENSPNYG00000017357	larp1b	98	66.125	Pundamilia_nyererei
ENSDARG00000061169	larp1b	95	73.152	ENSPNAG00000008823	larp1b	97	72.860	Pygocentrus_nattereri
ENSDARG00000061169	larp1b	79	54.329	ENSRROG00000030771	LARP1B	98	53.341	Rhinopithecus_roxellana
ENSDARG00000061169	larp1b	58	49.713	ENSSHAG00000014474	LARP1B	99	48.271	Sarcophilus_harrisii
ENSDARG00000061169	larp1b	80	67.483	ENSSMAG00000006347	larp1b	96	64.718	Scophthalmus_maximus
ENSDARG00000061169	larp1b	91	64.385	ENSSDUG00000004182	larp1b	99	62.655	Seriola_dumerili
ENSDARG00000061169	larp1b	95	58.382	ENSSLDG00000014613	larp1b	99	57.996	Seriola_lalandi_dorsalis
ENSDARG00000061169	larp1b	73	58.271	ENSSPUG00000011837	LARP1B	82	58.447	Sphenodon_punctatus
ENSDARG00000061169	larp1b	92	61.927	ENSSPAG00000017772	larp1b	99	60.128	Stegastes_partitus
ENSDARG00000061169	larp1b	53	87.778	ENSSSCG00000034280	LARP1B	98	87.778	Sus_scrofa
ENSDARG00000061169	larp1b	77	57.379	ENSTGUG00000002098	-	98	56.028	Taeniopygia_guttata
ENSDARG00000061169	larp1b	88	64.620	ENSTRUG00000005612	larp1b	92	63.693	Takifugu_rubripes
ENSDARG00000061169	larp1b	85	63.301	ENSTNIG00000012398	larp1b	98	65.005	Tetraodon_nigroviridis
ENSDARG00000061169	larp1b	56	58.553	ENSTBEG00000004177	LARP1B	65	55.921	Tupaia_belangeri
ENSDARG00000061169	larp1b	71	56.559	ENSTTRG00000012984	LARP1B	84	55.485	Tursiops_truncatus
ENSDARG00000061169	larp1b	79	56.703	ENSUMAG00000007373	LARP1B	96	55.385	Ursus_maritimus
ENSDARG00000061169	larp1b	62	67.045	ENSVPAG00000007223	LARP1B	74	67.045	Vicugna_pacos
ENSDARG00000061169	larp1b	79	56.813	ENSVVUG00000011307	LARP1B	99	54.933	Vulpes_vulpes
ENSDARG00000061169	larp1b	89	51.423	ENSXETG00000022512	larp1b	99	50.633	Xenopus_tropicalis
ENSDARG00000061169	larp1b	84	63.841	ENSXCOG00000004435	larp1b	99	60.979	Xiphophorus_couchianus
ENSDARG00000061169	larp1b	92	63.056	ENSXMAG00000008150	larp1b	99	61.560	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function