EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000061204 (Gene tree)
Gene ID: 556273
Gene Symbol: ddx20
Alias: fb59a11|si:dkey-193l3.3|si:dkey-193l3.4|wu:fb16g08|wu:fb59a11
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 18680 bases
Position: chr8:28241100-28259779
Accession: ZDB-GENE-030131-202
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000081471	ResIII	PF04851.15	5.4e-06	1	1
ENSDARP00000118603	ResIII	PF04851.15	5.4e-06	1	1
ENSDARP00000143528	ResIII	PF04851.15	5.8e-06	1	1
ENSDARP00000081471	DEAD	PF00270.29	2.5e-33	1	1
ENSDARP00000118603	DEAD	PF00270.29	2.6e-33	1	1
ENSDARP00000143528	DEAD	PF00270.29	2.7e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000087037	-	2843	-	ENSDARP00000081471	788 (aa)	-	F1R1C1
ENSDART00000141120	-	649	-	-	- (aa)	-	-
ENSDART00000136973	-	504	-	ENSDARP00000116007	106 (aa)	-	B0S7F4
ENSDART00000134226	-	2846	XM_021478262	ENSDARP00000118603	789 (aa)	XP_021333937	F6NN58
ENSDART00000175701	-	4641	XM_009303993	ENSDARP00000143528	811 (aa)	XP_009302268	A0A286Y8P8

Gene Model

Click here to download ENSDARG00000061204's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000061204's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000061204	ddx20	50	34.343	ENSDARG00000018425	ddx61	79	34.343
ENSDARG00000061204	ddx20	50	34.430	ENSDARG00000061338	ddx6	79	34.430

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000061204	ddx20	70	63.014	ENSG00000064703	DDX20	67	74.194	Homo_sapiens
ENSDARG00000061204	ddx20	96	55.488	ENSAPOG00000017383	DDX20	68	70.018	Acanthochromis_polyacanthus
ENSDARG00000061204	ddx20	96	51.970	ENSAMEG00000005344	DDX20	70	62.093	Ailuropoda_melanoleuca
ENSDARG00000061204	ddx20	96	55.211	ENSACIG00000013095	ddx20	70	69.420	Amphilophus_citrinellus
ENSDARG00000061204	ddx20	96	56.667	ENSAOCG00000013474	DDX20	72	68.227	Amphiprion_ocellaris
ENSDARG00000061204	ddx20	96	56.112	ENSAPEG00000006690	ddx20	71	68.227	Amphiprion_percula
ENSDARG00000061204	ddx20	96	55.918	ENSATEG00000002941	ddx20	69	70.973	Anabas_testudineus
ENSDARG00000061204	ddx20	65	48.807	ENSAPLG00000013826	DDX20	73	49.533	Anas_platyrhynchos
ENSDARG00000061204	ddx20	96	51.828	ENSACAG00000006235	DDX20	76	62.116	Anolis_carolinensis
ENSDARG00000061204	ddx20	96	51.935	ENSANAG00000037881	DDX20	70	62.158	Aotus_nancymaae
ENSDARG00000061204	ddx20	71	71.786	ENSACLG00000009485	ddx20	70	71.735	Astatotilapia_calliptera
ENSDARG00000061204	ddx20	75	68.852	ENSAMXG00000040738	ddx20	74	68.543	Astyanax_mexicanus
ENSDARG00000061204	ddx20	96	52.104	ENSBTAG00000018717	DDX20	70	62.017	Bos_taurus
ENSDARG00000061204	ddx20	96	51.737	ENSCJAG00000013428	DDX20	68	62.329	Callithrix_jacchus
ENSDARG00000061204	ddx20	96	51.966	ENSCAFG00000013674	DDX20	95	49.399	Canis_familiaris
ENSDARG00000061204	ddx20	96	51.754	ENSCAFG00020008055	DDX20	92	74.516	Canis_lupus_dingo
ENSDARG00000061204	ddx20	96	52.689	ENSCHIG00000011219	DDX20	70	63.283	Capra_hircus
ENSDARG00000061204	ddx20	96	51.166	ENSTSYG00000000153	DDX20	95	50.122	Carlito_syrichta
ENSDARG00000061204	ddx20	84	46.770	ENSCAPG00000017427	DDX20	54	75.305	Cavia_aperea
ENSDARG00000061204	ddx20	96	52.244	ENSCPOG00000032340	DDX20	71	62.093	Cavia_porcellus
ENSDARG00000061204	ddx20	70	62.735	ENSCCAG00000026759	DDX20	70	62.329	Cebus_capucinus
ENSDARG00000061204	ddx20	96	52.802	ENSCATG00000039030	DDX20	70	62.906	Cercocebus_atys
ENSDARG00000061204	ddx20	96	50.985	ENSCLAG00000008874	DDX20	71	62.457	Chinchilla_lanigera
ENSDARG00000061204	ddx20	96	52.927	ENSCSAG00000001582	DDX20	70	62.735	Chlorocebus_sabaeus
ENSDARG00000061204	ddx20	51	66.970	ENSCHOG00000002610	DDX20	50	75.926	Choloepus_hoffmanni
ENSDARG00000061204	ddx20	95	52.723	ENSCPBG00000021256	DDX20	80	61.706	Chrysemys_picta_bellii
ENSDARG00000061204	ddx20	51	60.848	ENSCSAVG00000003045	-	98	60.848	Ciona_savignyi
ENSDARG00000061204	ddx20	96	52.677	ENSCANG00000041894	DDX20	70	62.735	Colobus_angolensis_palliatus
ENSDARG00000061204	ddx20	96	51.341	ENSCGRG00001014132	Ddx20	70	62.521	Cricetulus_griseus_chok1gshd
ENSDARG00000061204	ddx20	87	48.229	ENSCGRG00000002300	Ddx20	71	60.465	Cricetulus_griseus_crigri
ENSDARG00000061204	ddx20	96	55.233	ENSCVAG00000014821	ddx20	77	66.283	Cyprinodon_variegatus
ENSDARG00000061204	ddx20	96	51.824	ENSDNOG00000030865	DDX20	95	50.000	Dasypus_novemcinctus
ENSDARG00000061204	ddx20	96	51.633	ENSDORG00000011660	Ddx20	96	49.639	Dipodomys_ordii
ENSDARG00000061204	ddx20	96	51.907	ENSEASG00005005454	DDX20	70	62.671	Equus_asinus_asinus
ENSDARG00000061204	ddx20	96	51.106	ENSECAG00000013565	DDX20	70	62.500	Equus_caballus
ENSDARG00000061204	ddx20	96	56.343	ENSELUG00000010260	ddx20	74	67.227	Esox_lucius
ENSDARG00000061204	ddx20	96	50.062	ENSFCAG00000025736	DDX20	70	62.245	Felis_catus
ENSDARG00000061204	ddx20	88	50.817	ENSFALG00000000666	DDX20	73	62.069	Ficedula_albicollis
ENSDARG00000061204	ddx20	96	50.600	ENSFDAG00000001140	DDX20	71	58.643	Fukomys_damarensis
ENSDARG00000061204	ddx20	96	56.404	ENSFHEG00000019742	ddx20	99	56.833	Fundulus_heteroclitus
ENSDARG00000061204	ddx20	95	51.754	ENSGALG00000001504	DDX20	74	62.045	Gallus_gallus
ENSDARG00000061204	ddx20	96	56.554	ENSGAFG00000006427	ddx20	100	55.500	Gambusia_affinis
ENSDARG00000061204	ddx20	95	51.861	ENSGAGG00000000130	DDX20	74	62.563	Gopherus_agassizii
ENSDARG00000061204	ddx20	70	63.014	ENSGGOG00000015576	DDX20	70	62.607	Gorilla_gorilla
ENSDARG00000061204	ddx20	71	71.607	ENSHBUG00000007853	ddx20	70	70.194	Haplochromis_burtoni
ENSDARG00000061204	ddx20	96	53.117	ENSHGLG00000014848	DDX20	70	62.393	Heterocephalus_glaber_female
ENSDARG00000061204	ddx20	96	53.117	ENSHGLG00100003740	DDX20	70	62.393	Heterocephalus_glaber_male
ENSDARG00000061204	ddx20	96	57.614	ENSHCOG00000001915	ddx20	100	57.088	Hippocampus_comes
ENSDARG00000061204	ddx20	73	73.137	ENSIPUG00000004876	ddx20	71	73.137	Ictalurus_punctatus
ENSDARG00000061204	ddx20	96	51.921	ENSSTOG00000029089	DDX20	70	62.671	Ictidomys_tridecemlineatus
ENSDARG00000061204	ddx20	96	52.463	ENSJJAG00000011198	Ddx20	95	51.970	Jaculus_jaculus
ENSDARG00000061204	ddx20	75	67.769	ENSKMAG00000019022	ddx20	77	67.047	Kryptolebias_marmoratus
ENSDARG00000061204	ddx20	97	55.886	ENSLBEG00000019194	ddx20	69	70.357	Labrus_bergylta
ENSDARG00000061204	ddx20	96	53.041	ENSLACG00000018491	DDX20	73	64.966	Latimeria_chalumnae
ENSDARG00000061204	ddx20	96	54.367	ENSLOCG00000010372	ddx20	72	67.832	Lepisosteus_oculatus
ENSDARG00000061204	ddx20	94	50.432	ENSLAFG00000014646	DDX20	95	49.629	Loxodonta_africana
ENSDARG00000061204	ddx20	96	52.677	ENSMFAG00000031755	DDX20	70	62.735	Macaca_fascicularis
ENSDARG00000061204	ddx20	96	52.677	ENSMNEG00000005757	DDX20	70	62.735	Macaca_nemestrina
ENSDARG00000061204	ddx20	96	52.618	ENSMLEG00000005722	DDX20	70	62.671	Mandrillus_leucophaeus
ENSDARG00000061204	ddx20	96	54.921	ENSMAMG00000009654	ddx20	70	69.056	Mastacembelus_armatus
ENSDARG00000061204	ddx20	96	56.473	ENSMZEG00005027081	ddx20	75	67.327	Maylandia_zebra
ENSDARG00000061204	ddx20	93	51.546	ENSMGAG00000004624	DDX20	74	63.063	Meleagris_gallopavo
ENSDARG00000061204	ddx20	96	52.147	ENSMAUG00000010659	Ddx20	70	62.692	Mesocricetus_auratus
ENSDARG00000061204	ddx20	96	51.801	ENSMICG00000011509	DDX20	70	62.607	Microcebus_murinus
ENSDARG00000061204	ddx20	96	51.883	ENSMOCG00000012954	Ddx20	71	61.111	Microtus_ochrogaster
ENSDARG00000061204	ddx20	96	57.289	ENSMMOG00000013103	ddx20	75	69.550	Mola_mola
ENSDARG00000061204	ddx20	97	52.920	ENSMODG00000001311	DDX20	70	63.837	Monodelphis_domestica
ENSDARG00000061204	ddx20	96	50.852	MGP_CAROLIEiJ_G0025474	Ddx20	70	62.287	Mus_caroli
ENSDARG00000061204	ddx20	96	51.177	ENSMUSG00000027905	Ddx20	70	62.134	Mus_musculus
ENSDARG00000061204	ddx20	96	52.073	MGP_PahariEiJ_G0026919	Ddx20	70	62.755	Mus_pahari
ENSDARG00000061204	ddx20	96	51.311	MGP_SPRETEiJ_G0026423	Ddx20	70	62.306	Mus_spretus
ENSDARG00000061204	ddx20	96	50.559	ENSMPUG00000004921	DDX20	70	61.538	Mustela_putorius_furo
ENSDARG00000061204	ddx20	84	47.398	ENSMLUG00000009676	DDX20	99	46.573	Myotis_lucifugus
ENSDARG00000061204	ddx20	96	52.410	ENSNGAG00000022953	Ddx20	95	49.519	Nannospalax_galili
ENSDARG00000061204	ddx20	96	56.010	ENSNBRG00000020244	ddx20	71	70.423	Neolamprologus_brichardi
ENSDARG00000061204	ddx20	96	52.691	ENSNLEG00000004040	DDX20	70	62.842	Nomascus_leucogenys
ENSDARG00000061204	ddx20	61	74.695	ENSOPRG00000004035	DDX20	77	74.695	Ochotona_princeps
ENSDARG00000061204	ddx20	71	71.607	ENSONIG00000012436	ddx20	99	57.362	Oreochromis_niloticus
ENSDARG00000061204	ddx20	63	62.524	ENSOANG00000003318	DDX20	81	61.407	Ornithorhynchus_anatinus
ENSDARG00000061204	ddx20	96	52.050	ENSOCUG00000025939	DDX20	70	62.222	Oryctolagus_cuniculus
ENSDARG00000061204	ddx20	96	58.935	ENSORLG00000008949	ddx20	100	58.217	Oryzias_latipes
ENSDARG00000061204	ddx20	96	58.809	ENSORLG00020003852	ddx20	100	57.707	Oryzias_latipes_hni
ENSDARG00000061204	ddx20	96	59.142	ENSORLG00015020167	ddx20	100	57.962	Oryzias_latipes_hsok
ENSDARG00000061204	ddx20	96	58.651	ENSOMEG00000013657	ddx20	100	57.741	Oryzias_melastigma
ENSDARG00000061204	ddx20	96	52.572	ENSOGAG00000010503	DDX20	70	62.478	Otolemur_garnettii
ENSDARG00000061204	ddx20	96	52.730	ENSOARG00000019651	DDX20	70	62.901	Ovis_aries
ENSDARG00000061204	ddx20	96	51.103	ENSPPAG00000031680	DDX20	70	62.607	Pan_paniscus
ENSDARG00000061204	ddx20	96	51.103	ENSPPRG00000022979	DDX20	70	62.245	Panthera_pardus
ENSDARG00000061204	ddx20	96	50.735	ENSPTRG00000001105	DDX20	70	62.093	Pan_troglodytes
ENSDARG00000061204	ddx20	96	52.802	ENSPANG00000017985	DDX20	70	62.906	Papio_anubis
ENSDARG00000061204	ddx20	93	54.047	ENSPKIG00000020161	ddx20	77	64.410	Paramormyrops_kingsleyae
ENSDARG00000061204	ddx20	88	50.604	ENSPSIG00000003636	DDX20	99	51.147	Pelodiscus_sinensis
ENSDARG00000061204	ddx20	96	57.545	ENSPMGG00000005966	ddx20	77	67.388	Periophthalmus_magnuspinnatus
ENSDARG00000061204	ddx20	96	51.220	ENSPEMG00000019595	Ddx20	70	62.075	Peromyscus_maniculatus_bairdii
ENSDARG00000061204	ddx20	96	52.317	ENSPCIG00000027721	DDX20	75	60.386	Phascolarctos_cinereus
ENSDARG00000061204	ddx20	96	55.542	ENSPFOG00000010540	ddx20	100	55.639	Poecilia_formosa
ENSDARG00000061204	ddx20	96	56.226	ENSPLAG00000009925	ddx20	100	55.709	Poecilia_latipinna
ENSDARG00000061204	ddx20	96	56.764	ENSPMEG00000005998	ddx20	100	56.076	Poecilia_mexicana
ENSDARG00000061204	ddx20	96	56.787	ENSPREG00000018837	ddx20	73	69.474	Poecilia_reticulata
ENSDARG00000061204	ddx20	70	63.077	ENSPPYG00000001026	DDX20	70	62.842	Pongo_abelii
ENSDARG00000061204	ddx20	96	51.292	ENSPCOG00000025185	DDX20	70	62.329	Propithecus_coquereli
ENSDARG00000061204	ddx20	96	52.638	ENSPVAG00000004664	DDX20	71	62.287	Pteropus_vampyrus
ENSDARG00000061204	ddx20	96	55.706	ENSPNYG00000014433	ddx20	70	71.556	Pundamilia_nyererei
ENSDARG00000061204	ddx20	96	60.939	ENSPNAG00000018148	ddx20	99	61.090	Pygocentrus_nattereri
ENSDARG00000061204	ddx20	96	51.288	ENSRNOG00000015274	Ddx20	95	51.163	Rattus_norvegicus
ENSDARG00000061204	ddx20	96	52.553	ENSRBIG00000030629	DDX20	70	62.735	Rhinopithecus_bieti
ENSDARG00000061204	ddx20	96	52.553	ENSRROG00000030608	DDX20	70	62.735	Rhinopithecus_roxellana
ENSDARG00000061204	ddx20	96	52.369	ENSSBOG00000024789	DDX20	70	62.329	Saimiri_boliviensis_boliviensis
ENSDARG00000061204	ddx20	84	49.657	ENSSHAG00000014518	DDX20	70	61.134	Sarcophilus_harrisii
ENSDARG00000061204	ddx20	96	55.682	ENSSFOG00015008354	ddx20	100	53.866	Scleropages_formosus
ENSDARG00000061204	ddx20	71	71.071	ENSSMAG00000007498	ddx20	71	67.769	Scophthalmus_maximus
ENSDARG00000061204	ddx20	97	57.125	ENSSDUG00000015980	ddx20	99	56.462	Seriola_dumerili
ENSDARG00000061204	ddx20	97	55.351	ENSSLDG00000000437	ddx20	69	67.051	Seriola_lalandi_dorsalis
ENSDARG00000061204	ddx20	88	45.219	ENSSARG00000013569	DDX20	68	49.107	Sorex_araneus
ENSDARG00000061204	ddx20	96	55.850	ENSSPAG00000020022	ddx20	67	70.280	Stegastes_partitus
ENSDARG00000061204	ddx20	96	52.399	ENSSSCG00000006783	DDX20	70	63.293	Sus_scrofa
ENSDARG00000061204	ddx20	70	61.735	ENSTGUG00000013660	DDX20	84	62.478	Taeniopygia_guttata
ENSDARG00000061204	ddx20	96	56.359	ENSTRUG00000023712	ddx20	99	56.025	Takifugu_rubripes
ENSDARG00000061204	ddx20	96	56.375	ENSTNIG00000019425	ddx20	75	66.667	Tetraodon_nigroviridis
ENSDARG00000061204	ddx20	53	74.667	ENSTTRG00000005131	DDX20	54	74.667	Tursiops_truncatus
ENSDARG00000061204	ddx20	96	49.389	ENSUAMG00000018924	DDX20	70	59.520	Ursus_americanus
ENSDARG00000061204	ddx20	88	49.468	ENSUMAG00000013897	DDX20	66	60.345	Ursus_maritimus
ENSDARG00000061204	ddx20	70	62.098	ENSVPAG00000010031	DDX20	70	61.800	Vicugna_pacos
ENSDARG00000061204	ddx20	96	51.852	ENSVVUG00000016236	DDX20	70	61.790	Vulpes_vulpes
ENSDARG00000061204	ddx20	95	50.769	ENSXETG00000013568	ddx20	80	60.661	Xenopus_tropicalis
ENSDARG00000061204	ddx20	97	55.776	ENSXCOG00000007952	ddx20	99	55.721	Xiphophorus_couchianus
ENSDARG00000061204	ddx20	96	57.503	ENSXMAG00000007573	ddx20	100	56.187	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000387	spliceosomal snRNP assembly	-	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISS	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0032797	SMN complex	-	ISS	Component
GO:0034719	SMN-Sm protein complex	-	ISS	Component