EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000061338 (Gene tree)
Gene ID
564633
Gene Symbol
ddx6
Alias
p54a|si:ch211-147p17.1
Full Name
DEAD (Asp-Glu-Ala-Asp) box helicase 6
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Minus strand
Length
18144 bases
Position
chr18:43865901-43884044
Accession
ZDB-GENE-070912-83
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000081816DEADPF00270.291.7e-4311
ENSDARP00000149027DEADPF00270.291.7e-4311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000185638-6780-ENSDARP00000149027484 (aa)-E7FD91
ENSDART00000087382-5615XM_679831ENSDARP00000081816484 (aa)XP_684923E7FD91
Gene Model
Click here to download ENSDARG00000061338's gene model file
Pathways
Pathway IDPathway NameSource
dre03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000061338's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000061338ddx67730.673ENSDARG00000005774ddx3xb9731.142
ENSDARG00000061338ddx66932.113ENSDARG00000009864ddx556032.113
ENSDARG00000061338ddx66630.699ENSDARG00000030789ddx185030.699
ENSDARG00000061338ddx67033.148ENSDARG00000014373ddx45233.148
ENSDARG00000061338ddx67934.430ENSDARG00000061204ddx205034.430
ENSDARG00000061338ddx67736.053ENSDARG00000036069ddx39b8736.053
ENSDARG00000061338ddx69978.838ENSDARG00000018425ddx619879.046
ENSDARG00000061338ddx67236.565ENSDARG00000005699ddx197336.565
ENSDARG00000061338ddx67530.027ENSDARG00000100505ddx526130.027
ENSDARG00000061338ddx67836.772ENSDARG00000102978eif4a39236.772
ENSDARG00000061338ddx67934.406ENSDARG00000044325zgc:1936908234.406
ENSDARG00000061338ddx67735.263ENSDARG00000006225ddx39aa8935.263
ENSDARG00000061338ddx67937.984ENSDARG00000016477eif4a29437.984
ENSDARG00000061338ddx67030.495ENSDARG00000060411ddx286032.239
ENSDARG00000061338ddx66832.448ENSDARG00000010873DDX177230.872
ENSDARG00000061338ddx67532.440ENSDARG00000012899ddx497932.440
ENSDARG00000061338ddx66745.098ENSDARG00000032117ddx15245.098
ENSDARG00000061338ddx67638.978ENSDARG00000092115eif4a1a9138.978
ENSDARG00000061338ddx67638.978ENSDARG00000003032eif4a1b9138.978
ENSDARG00000061338ddx67736.053ENSDARG00000015111ddx39ab8936.053
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000061338ddx69989.234ENSG00000110367DDX69989.441Homo_sapiens
ENSDARG00000061338ddx69994.203ENSAPOG00000007695ddx69994.203Acanthochromis_polyacanthus
ENSDARG00000061338ddx69989.234ENSAMEG00000006073DDX69989.441Ailuropoda_melanoleuca
ENSDARG00000061338ddx69979.710ENSACIG00000023989ddx69979.710Amphilophus_citrinellus
ENSDARG00000061338ddx69994.203ENSAOCG00000022849ddx69994.203Amphiprion_ocellaris
ENSDARG00000061338ddx69994.203ENSAPEG00000013047ddx69994.203Amphiprion_percula
ENSDARG00000061338ddx69993.582ENSATEG00000009693ddx69994.203Anabas_testudineus
ENSDARG00000061338ddx69989.234ENSAPLG00000007274DDX69989.441Anas_platyrhynchos
ENSDARG00000061338ddx69988.613ENSACAG00000017134DDX69988.613Anolis_carolinensis
ENSDARG00000061338ddx69985.300ENSANAG00000038280-9985.507Aotus_nancymaae
ENSDARG00000061338ddx69962.112ENSANAG00000032103-9073.298Aotus_nancymaae
ENSDARG00000061338ddx69993.789ENSACLG00000022164ddx69994.410Astatotilapia_calliptera
ENSDARG00000061338ddx610097.107ENSAMXG00000019553ddx610097.107Astyanax_mexicanus
ENSDARG00000061338ddx69989.234ENSBTAG00000009067DDX69989.441Bos_taurus
ENSDARG00000061338ddx69989.234ENSCJAG00000013591DDX69989.441Callithrix_jacchus
ENSDARG00000061338ddx69989.234ENSCAFG00000012442DDX69989.441Canis_familiaris
ENSDARG00000061338ddx69989.234ENSCAFG00020013150DDX69989.441Canis_lupus_dingo
ENSDARG00000061338ddx69989.027ENSCHIG00000026114DDX69989.234Capra_hircus
ENSDARG00000061338ddx69989.234ENSTSYG00000026313DDX69989.441Carlito_syrichta
ENSDARG00000061338ddx68061.634ENSCAPG00000013040DDX69961.634Cavia_aperea
ENSDARG00000061338ddx69983.023ENSCPOG00000010587Ddx69983.230Cavia_porcellus
ENSDARG00000061338ddx69985.093ENSCCAG00000021636-9985.300Cebus_capucinus
ENSDARG00000061338ddx69967.351ENSCATG00000009414-9967.146Cercocebus_atys
ENSDARG00000061338ddx69989.234ENSCATG00000045025DDX69989.441Cercocebus_atys
ENSDARG00000061338ddx69989.027ENSCLAG00000016749DDX69989.234Chinchilla_lanigera
ENSDARG00000061338ddx69989.234ENSCSAG00000002564DDX69989.441Chlorocebus_sabaeus
ENSDARG00000061338ddx68693.976ENSCHOG00000007565DDX69993.976Choloepus_hoffmanni
ENSDARG00000061338ddx69988.613ENSCPBG00000004323DDX69988.820Chrysemys_picta_bellii
ENSDARG00000061338ddx69979.710ENSCANG00000042664DDX69979.917Colobus_angolensis_palliatus
ENSDARG00000061338ddx69989.027ENSCGRG00001023465Ddx69989.234Cricetulus_griseus_chok1gshd
ENSDARG00000061338ddx69989.027ENSCGRG00000014165Ddx69989.234Cricetulus_griseus_crigri
ENSDARG00000061338ddx69993.168ENSCSEG00000006875ddx69993.168Cynoglossus_semilaevis
ENSDARG00000061338ddx69991.097ENSCVAG00000002540ddx69991.097Cyprinodon_variegatus
ENSDARG00000061338ddx69984.536ENSDNOG00000014447DDX69984.742Dasypus_novemcinctus
ENSDARG00000061338ddx68881.221ENSDORG00000001037Ddx610081.455Dipodomys_ordii
ENSDARG00000061338ddx66394.574ENSETEG00000007589-6894.574Echinops_telfairi
ENSDARG00000061338ddx65487.023ENSEBUG00000010009ddx67187.023Eptatretus_burgeri
ENSDARG00000061338ddx69989.234ENSEASG00005004961DDX69989.441Equus_asinus_asinus
ENSDARG00000061338ddx69989.234ENSECAG00000000539DDX69989.441Equus_caballus
ENSDARG00000061338ddx68880.986ENSEEUG00000002824DDX610081.221Erinaceus_europaeus
ENSDARG00000061338ddx69989.837ENSELUG00000022660ddx69990.854Esox_lucius
ENSDARG00000061338ddx69989.234ENSFCAG00000029360DDX69989.441Felis_catus
ENSDARG00000061338ddx69989.234ENSFALG00000009831DDX69989.441Ficedula_albicollis
ENSDARG00000061338ddx69989.234ENSFDAG00000012457DDX69989.441Fukomys_damarensis
ENSDARG00000061338ddx69991.925ENSFHEG00000021202ddx69991.925Fundulus_heteroclitus
ENSDARG00000061338ddx610092.371ENSGMOG00000009542ddx610092.371Gadus_morhua
ENSDARG00000061338ddx69989.234ENSGALG00000033064DDX69989.441Gallus_gallus
ENSDARG00000061338ddx69991.511ENSGAFG00000020279ddx69991.511Gambusia_affinis
ENSDARG00000061338ddx69990.269ENSGACG00000012258ddx69990.269Gasterosteus_aculeatus
ENSDARG00000061338ddx69988.820ENSGAGG00000020608DDX69989.027Gopherus_agassizii
ENSDARG00000061338ddx69970.868ENSGGOG00000038856-9971.074Gorilla_gorilla
ENSDARG00000061338ddx69963.430ENSGGOG00000023765-9963.223Gorilla_gorilla
ENSDARG00000061338ddx69979.917ENSGGOG00000016751DDX69980.124Gorilla_gorilla
ENSDARG00000061338ddx69993.582ENSHBUG00000009651ddx69994.203Haplochromis_burtoni
ENSDARG00000061338ddx69989.234ENSHGLG00000004316DDX69989.441Heterocephalus_glaber_female
ENSDARG00000061338ddx69989.234ENSHGLG00100014595DDX69989.441Heterocephalus_glaber_male
ENSDARG00000061338ddx69992.784ENSHCOG00000012451ddx69992.784Hippocampus_comes
ENSDARG00000061338ddx610095.455ENSIPUG00000000616ddx610095.455Ictalurus_punctatus
ENSDARG00000061338ddx69989.441ENSSTOG00000014475DDX69989.648Ictidomys_tridecemlineatus
ENSDARG00000061338ddx69989.234ENSJJAG00000021630Ddx69989.441Jaculus_jaculus
ENSDARG00000061338ddx69992.340ENSKMAG00000003546ddx69992.547Kryptolebias_marmoratus
ENSDARG00000061338ddx69987.526ENSLBEG00000017823ddx69982.643Labrus_bergylta
ENSDARG00000061338ddx69990.021ENSLACG00000017153DDX69990.229Latimeria_chalumnae
ENSDARG00000061338ddx610093.608ENSLOCG00000000770ddx610093.608Lepisosteus_oculatus
ENSDARG00000061338ddx69989.441ENSLAFG00000011012DDX69989.648Loxodonta_africana
ENSDARG00000061338ddx69989.234ENSMFAG00000042472DDX69989.441Macaca_fascicularis
ENSDARG00000061338ddx69963.768ENSMMUG00000047408-9964.182Macaca_mulatta
ENSDARG00000061338ddx69989.234ENSMMUG00000018651DDX69989.441Macaca_mulatta
ENSDARG00000061338ddx69989.234ENSMNEG00000033959DDX69989.441Macaca_nemestrina
ENSDARG00000061338ddx69989.234ENSMLEG00000028151DDX69989.441Mandrillus_leucophaeus
ENSDARG00000061338ddx69992.245ENSMAMG00000013732ddx69992.418Mastacembelus_armatus
ENSDARG00000061338ddx69993.789ENSMZEG00005024098ddx69994.410Maylandia_zebra
ENSDARG00000061338ddx69989.234ENSMGAG00000004123DDX69989.441Meleagris_gallopavo
ENSDARG00000061338ddx69988.406ENSMAUG00000008886Ddx69988.613Mesocricetus_auratus
ENSDARG00000061338ddx69989.234ENSMICG00000011519DDX69989.441Microcebus_murinus
ENSDARG00000061338ddx69989.027ENSMOCG00000002068Ddx69989.234Microtus_ochrogaster
ENSDARG00000061338ddx69986.749ENSMMOG00000001233ddx69986.749Mola_mola
ENSDARG00000061338ddx69989.234ENSMODG00000013375DDX69989.441Monodelphis_domestica
ENSDARG00000061338ddx69989.855ENSMALG00000009308ddx69989.855Monopterus_albus
ENSDARG00000061338ddx69984.886MGP_CAROLIEiJ_G0032122Ddx69985.300Mus_caroli
ENSDARG00000061338ddx69988.613ENSMUSG00000032097Ddx69989.027Mus_musculus
ENSDARG00000061338ddx69988.199MGP_PahariEiJ_G0014991Ddx69987.680Mus_pahari
ENSDARG00000061338ddx69989.234ENSMPUG00000004857DDX69989.441Mustela_putorius_furo
ENSDARG00000061338ddx69989.234ENSMLUG00000003671DDX69989.441Myotis_lucifugus
ENSDARG00000061338ddx69989.234ENSNGAG00000016848Ddx69989.441Nannospalax_galili
ENSDARG00000061338ddx69985.093ENSNBRG00000003507ddx69985.093Neolamprologus_brichardi
ENSDARG00000061338ddx69989.234ENSNLEG00000007372DDX69989.441Nomascus_leucogenys
ENSDARG00000061338ddx69978.675ENSMEUG00000010556DDX69978.882Notamacropus_eugenii
ENSDARG00000061338ddx68172.449ENSOPRG00000016112DDX610072.704Ochotona_princeps
ENSDARG00000061338ddx69989.027ENSODEG00000007950DDX69989.234Octodon_degus
ENSDARG00000061338ddx69994.410ENSONIG00000005756ddx69994.410Oreochromis_niloticus
ENSDARG00000061338ddx68793.587ENSOANG00000003751DDX69893.587Ornithorhynchus_anatinus
ENSDARG00000061338ddx69989.234ENSOCUG00000005849DDX69989.441Oryctolagus_cuniculus
ENSDARG00000061338ddx69991.925ENSORLG00000002506ddx69990.476Oryzias_latipes
ENSDARG00000061338ddx69992.133ENSORLG00020016534ddx69990.683Oryzias_latipes_hni
ENSDARG00000061338ddx69991.718ENSORLG00015005301ddx69990.476Oryzias_latipes_hsok
ENSDARG00000061338ddx69991.511ENSOMEG00000001347ddx69990.269Oryzias_melastigma
ENSDARG00000061338ddx69989.234ENSOGAG00000007978DDX69989.441Otolemur_garnettii
ENSDARG00000061338ddx69989.027ENSOARG00000011455DDX69989.234Ovis_aries
ENSDARG00000061338ddx69972.107ENSPPAG00000040387-9972.314Pan_paniscus
ENSDARG00000061338ddx69989.234ENSPPAG00000034894DDX69989.441Pan_paniscus
ENSDARG00000061338ddx69962.526ENSPPAG00000039963-9963.017Pan_paniscus
ENSDARG00000061338ddx69989.234ENSPPRG00000009039DDX69989.441Panthera_pardus
ENSDARG00000061338ddx69989.234ENSPTIG00000018551DDX69989.441Panthera_tigris_altaica
ENSDARG00000061338ddx69989.234ENSPTRG00000004353DDX69989.441Pan_troglodytes
ENSDARG00000061338ddx69963.561ENSPTRG00000043896-9964.050Pan_troglodytes
ENSDARG00000061338ddx69971.901ENSPTRG00000050136-9972.107Pan_troglodytes
ENSDARG00000061338ddx69989.234ENSPANG00000018963DDX69989.441Papio_anubis
ENSDARG00000061338ddx610095.248ENSPKIG00000013728ddx610095.248Paramormyrops_kingsleyae
ENSDARG00000061338ddx69987.449ENSPSIG00000013230DDX69987.449Pelodiscus_sinensis
ENSDARG00000061338ddx69980.952ENSPMGG00000023707ddx69981.366Periophthalmus_magnuspinnatus
ENSDARG00000061338ddx69978.119ENSPMAG00000007168ddx69978.557Petromyzon_marinus
ENSDARG00000061338ddx69992.133ENSPFOG00000010555ddx69992.133Poecilia_formosa
ENSDARG00000061338ddx69991.925ENSPLAG00000019684ddx69991.925Poecilia_latipinna
ENSDARG00000061338ddx69992.133ENSPMEG00000019775ddx69992.133Poecilia_mexicana
ENSDARG00000061338ddx69991.718ENSPREG00000016082ddx69991.718Poecilia_reticulata
ENSDARG00000061338ddx69986.335ENSPPYG00000003942DDX69986.542Pongo_abelii
ENSDARG00000061338ddx69980.538ENSPCAG00000004767DDX69980.538Procavia_capensis
ENSDARG00000061338ddx69989.234ENSPCOG00000020762DDX69989.441Propithecus_coquereli
ENSDARG00000061338ddx69981.781ENSPVAG00000005421DDX69981.988Pteropus_vampyrus
ENSDARG00000061338ddx69993.582ENSPNYG00000008538ddx69994.203Pundamilia_nyererei
ENSDARG00000061338ddx69976.673ENSPNAG00000010102ddx69976.471Pygocentrus_nattereri
ENSDARG00000061338ddx69988.820ENSRNOG00000053932Ddx69989.234Rattus_norvegicus
ENSDARG00000061338ddx69965.164ENSRBIG00000038129-9964.959Rhinopithecus_bieti
ENSDARG00000061338ddx69989.234ENSRBIG00000032545DDX69989.441Rhinopithecus_bieti
ENSDARG00000061338ddx69961.491ENSRBIG00000027933-9961.905Rhinopithecus_bieti
ENSDARG00000061338ddx69964.596ENSRROG00000034419-9965.010Rhinopithecus_roxellana
ENSDARG00000061338ddx69989.234ENSRROG00000032478DDX69989.441Rhinopithecus_roxellana
ENSDARG00000061338ddx69964.754ENSRROG00000032664-9964.754Rhinopithecus_roxellana
ENSDARG00000061338ddx69989.234ENSSBOG00000029671DDX69989.441Saimiri_boliviensis_boliviensis
ENSDARG00000061338ddx69989.234ENSSHAG00000011424DDX69989.441Sarcophilus_harrisii
ENSDARG00000061338ddx610094.835ENSSFOG00015023211ddx610094.835Scleropages_formosus
ENSDARG00000061338ddx69446.827ENSSFOG00015005998DDX69750.127Scleropages_formosus
ENSDARG00000061338ddx69993.168ENSSMAG00000001253ddx69993.168Scophthalmus_maximus
ENSDARG00000061338ddx69994.410ENSSDUG00000019695ddx69994.410Seriola_dumerili
ENSDARG00000061338ddx69994.410ENSSLDG00000006167ddx69994.410Seriola_lalandi_dorsalis
ENSDARG00000061338ddx69989.234ENSSARG00000003219DDX69989.441Sorex_araneus
ENSDARG00000061338ddx69485.526ENSSPUG00000004404DDX69291.148Sphenodon_punctatus
ENSDARG00000061338ddx69994.203ENSSPAG00000023258ddx69994.203Stegastes_partitus
ENSDARG00000061338ddx69989.027ENSSSCG00000015097DDX69989.234Sus_scrofa
ENSDARG00000061338ddx69588.261ENSTGUG00000017360DDX610088.478Taeniopygia_guttata
ENSDARG00000061338ddx69993.582ENSTRUG00000011848ddx69993.582Takifugu_rubripes
ENSDARG00000061338ddx69994.203ENSTNIG00000016295ddx69994.203Tetraodon_nigroviridis
ENSDARG00000061338ddx69986.128ENSTTRG00000004313DDX69986.335Tursiops_truncatus
ENSDARG00000061338ddx69989.234ENSUAMG00000027749DDX69989.441Ursus_americanus
ENSDARG00000061338ddx69989.234ENSUMAG00000000993DDX69989.441Ursus_maritimus
ENSDARG00000061338ddx69987.164ENSVPAG00000005601DDX69987.371Vicugna_pacos
ENSDARG00000061338ddx69988.820ENSVVUG00000024121DDX69989.027Vulpes_vulpes
ENSDARG00000061338ddx69988.773ENSXETG00000010061ddx69989.189Xenopus_tropicalis
ENSDARG00000061338ddx69984.265ENSXCOG00000008560ddx69984.265Xiphophorus_couchianus
ENSDARG00000061338ddx69991.304ENSXMAG00000007620ddx69991.304Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0003676nucleic acid binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0009408response to heat27489304.IGIProcess
GO:0016787hydrolase activity-IEAFunction
GO:0034063stress granule assembly27489304.IGIProcess
GO:0034063stress granule assembly27489304.IMPProcess
GO:0036464cytoplasmic ribonucleoprotein granule27489304.IDAComponent

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