EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000061414 (Gene tree)
Gene ID: 100538153
Gene Symbol: slx4
Alias: btbd12|si:dkey-44g23.4
Full Name: SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 45482 bases
Position: chr22:26798853-26844334
Accession: ZDB-GENE-050208-359
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000082010	zf-met	PF12874.7	0.00027	1	1
ENSDARP00000152101	zf-met	PF12874.7	0.00028	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000087576	-	5452	XM_003201098	ENSDARP00000082010	1719 (aa)	XP_003201146	F1QPU2
ENSDART00000179780	-	5431	-	ENSDARP00000152101	1712 (aa)	-	A0A2R8QIP4
ENSDART00000147719	-	623	-	ENSDARP00000122025	208 (aa)	-	F1QUW5

Gene Model

Click here to download ENSDARG00000061414's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000061414's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000061414	slx4	61	42.382	ENSXETG00000010319	slx4	70	42.017	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000706	meiotic DNA double-strand break processing	21873635.	IBA	Process
GO:0000712	resolution of meiotic recombination intermediates	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0008821	crossover junction endodeoxyribonuclease activity	21873635.	IBA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0017108	5'-flap endonuclease activity	21873635.	IBA	Function
GO:0017108	5'-flap endonuclease activity	-	IEA	Function
GO:0033557	Slx1-Slx4 complex	21873635.	IBA	Component
GO:0033557	Slx1-Slx4 complex	-	IEA	Component
GO:0036297	interstrand cross-link repair	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048257	3'-flap endonuclease activity	21873635.	IBA	Function
GO:0061008	hepaticobiliary system development	25947162.	IMP	Process
GO:0061010	gall bladder development	25947162.	IMP	Process
GO:0061011	hepatic duct development	25947162.	IMP	Process