EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000061735 (Gene tree)
Gene ID
555643
Gene Symbol
hnrnpm
Alias
si:ch211-197g15.1|wu:fa10g07|wu:fa98b02
Full Name
heterogeneous nuclear ribonucleoprotein M
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Plus strand
Length
13122 bases
Position
chr22:17531020-17544141
Accession
ZDB-GENE-030131-6898
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000082789RRM_1PF00076.222.6e-5313
ENSDARP00000082789RRM_1PF00076.222.6e-5323
ENSDARP00000082789RRM_1PF00076.222.6e-5333
ENSDARP00000121443RRM_1PF00076.222.8e-5313
ENSDARP00000121443RRM_1PF00076.222.8e-5323
ENSDARP00000121443RRM_1PF00076.222.8e-5333
ENSDARP00000137047RRM_1PF00076.222.8e-5313
ENSDARP00000137047RRM_1PF00076.222.8e-5323
ENSDARP00000137047RRM_1PF00076.222.8e-5333
ENSDARP00000124770RRM_1PF00076.223.6e-1311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000142871-947--- (aa)--
ENSDART00000161174-2274-ENSDARP00000137047715 (aa)-F1R2E0
ENSDART00000150120-796--- (aa)--
ENSDART00000088356-5187XM_005170455ENSDARP00000082789701 (aa)XP_005170512E9QEE4
ENSDART00000149531-703-ENSDARP00000124770234 (aa)-F8W2D3
ENSDART00000137689-2559XM_005170454ENSDARP00000121443715 (aa)XP_005170511F1R2E0
Gene Model
Click here to download ENSDARG00000061735's gene model file
Pathways
Pathway IDPathway NameSource
dre03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000061735's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000061735hnrnpm9958.759ENSDARG00000059398myef29351.634
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000061735hnrnpm8770.796ENSG00000099783HNRNPM9370.796Homo_sapiens
ENSDARG00000061735hnrnpm10077.075ENSAPOG00000001463hnrnpm7977.821Acanthochromis_polyacanthus
ENSDARG00000061735hnrnpm8770.796ENSAMEG00000004979HNRNPM9170.796Ailuropoda_melanoleuca
ENSDARG00000061735hnrnpm10075.889ENSACIG00000011870hnrnpm7475.862Amphilophus_citrinellus
ENSDARG00000061735hnrnpm10076.680ENSAOCG00000008519hnrnpm7677.237Amphiprion_ocellaris
ENSDARG00000061735hnrnpm10076.680ENSAPEG00000004257hnrnpm7377.432Amphiprion_percula
ENSDARG00000061735hnrnpm10078.800ENSATEG00000008976hnrnpm7576.654Anabas_testudineus
ENSDARG00000061735hnrnpm10059.583ENSAPLG00000010149HNRNPM9764.957Anas_platyrhynchos
ENSDARG00000061735hnrnpm9959.592ENSANAG00000025358HNRNPM9370.796Aotus_nancymaae
ENSDARG00000061735hnrnpm8569.027ENSANAG00000019489-9262.595Aotus_nancymaae
ENSDARG00000061735hnrnpm10082.700ENSACLG00000020495hnrnpm7672.674Astatotilapia_calliptera
ENSDARG00000061735hnrnpm10083.264ENSAMXG00000016073hnrnpm7280.439Astyanax_mexicanus
ENSDARG00000061735hnrnpm5144.560ENSBTAG00000048355-7843.781Bos_taurus
ENSDARG00000061735hnrnpm8770.796ENSBTAG00000021039HNRNPM9468.142Bos_taurus
ENSDARG00000061735hnrnpm8770.796ENSCJAG00000010802HNRNPM9170.796Callithrix_jacchus
ENSDARG00000061735hnrnpm8565.254ENSCAFG00000018524HNRNPM8768.142Canis_familiaris
ENSDARG00000061735hnrnpm9661.328ENSCAFG00020022128HNRNPM9960.526Canis_lupus_dingo
ENSDARG00000061735hnrnpm8565.254ENSCHIG00000026313HNRNPM9368.142Capra_hircus
ENSDARG00000061735hnrnpm9153.947ENSTSYG00000037074-5460.684Carlito_syrichta
ENSDARG00000061735hnrnpm10059.761ENSTSYG00000011487-9370.796Carlito_syrichta
ENSDARG00000061735hnrnpm10049.819ENSTSYG00000030502-9661.017Carlito_syrichta
ENSDARG00000061735hnrnpm7665.556ENSCAPG00000011505HNRNPM8279.070Cavia_aperea
ENSDARG00000061735hnrnpm8770.796ENSCPOG00000015182HNRNPM7470.796Cavia_porcellus
ENSDARG00000061735hnrnpm9959.592ENSCCAG00000018782HNRNPM9165.487Cebus_capucinus
ENSDARG00000061735hnrnpm9459.244ENSCCAG00000018580-9348.204Cebus_capucinus
ENSDARG00000061735hnrnpm8770.796ENSCATG00000035478HNRNPM9370.796Cercocebus_atys
ENSDARG00000061735hnrnpm8365.049ENSCLAG00000003049-5561.538Chinchilla_lanigera
ENSDARG00000061735hnrnpm8770.796ENSCLAG00000011194-7470.796Chinchilla_lanigera
ENSDARG00000061735hnrnpm8567.797ENSCSAG00000008009HNRNPM9370.796Chlorocebus_sabaeus
ENSDARG00000061735hnrnpm8770.796ENSCHOG00000013627HNRNPM9448.505Choloepus_hoffmanni
ENSDARG00000061735hnrnpm10067.068ENSCPBG00000017052-6160.526Chrysemys_picta_bellii
ENSDARG00000061735hnrnpm8770.796ENSCANG00000043491HNRNPM9948.505Colobus_angolensis_palliatus
ENSDARG00000061735hnrnpm9652.549ENSCANG00000041671-9848.940Colobus_angolensis_palliatus
ENSDARG00000061735hnrnpm8357.282ENSCGRG00001004249-6157.843Cricetulus_griseus_chok1gshd
ENSDARG00000061735hnrnpm8671.698ENSCGRG00001008003-9171.698Cricetulus_griseus_chok1gshd
ENSDARG00000061735hnrnpm8568.644ENSCGRG00001022655-6671.681Cricetulus_griseus_chok1gshd
ENSDARG00000061735hnrnpm8265.487ENSCGRG00001012021-8263.248Cricetulus_griseus_chok1gshd
ENSDARG00000061735hnrnpm8352.326ENSCGRG00001004486-5451.695Cricetulus_griseus_chok1gshd
ENSDARG00000061735hnrnpm8468.644ENSCGRG00000010065-6971.681Cricetulus_griseus_crigri
ENSDARG00000061735hnrnpm8769.027ENSCGRG00000012441-9369.027Cricetulus_griseus_crigri
ENSDARG00000061735hnrnpm8352.326ENSCGRG00000003596-5451.695Cricetulus_griseus_crigri
ENSDARG00000061735hnrnpm8671.698ENSCGRG00000012006-9171.698Cricetulus_griseus_crigri
ENSDARG00000061735hnrnpm10071.538ENSCSEG00000014980hnrnpm5272.727Cynoglossus_semilaevis
ENSDARG00000061735hnrnpm10073.725ENSCVAG00000020838hnrnpm7375.681Cyprinodon_variegatus
ENSDARG00000061735hnrnpm10062.454ENSDNOG00000012157HNRNPM8668.142Dasypus_novemcinctus
ENSDARG00000061735hnrnpm8770.796ENSDORG00000008105Hnrnpm9370.796Dipodomys_ordii
ENSDARG00000061735hnrnpm8770.796ENSETEG00000019712HNRNPM9268.376Echinops_telfairi
ENSDARG00000061735hnrnpm9662.195ENSEASG00005022434HNRNPM8668.142Equus_asinus_asinus
ENSDARG00000061735hnrnpm9664.706ENSECAG00000023868HNRNPM8668.142Equus_caballus
ENSDARG00000061735hnrnpm5057.426ENSEEUG00000001929-6157.426Erinaceus_europaeus
ENSDARG00000061735hnrnpm10085.897ENSELUG00000021183hnrnpm6693.333Esox_lucius
ENSDARG00000061735hnrnpm8765.487ENSFCAG00000015218HNRNPM9165.487Felis_catus
ENSDARG00000061735hnrnpm10058.750ENSFALG00000001059HNRNPM9960.526Ficedula_albicollis
ENSDARG00000061735hnrnpm8770.796ENSFDAG00000014680HNRNPM9370.796Fukomys_damarensis
ENSDARG00000061735hnrnpm10075.000ENSFHEG00000006712hnrnpm9469.565Fundulus_heteroclitus
ENSDARG00000061735hnrnpm10075.745ENSGMOG00000009724hnrnpm5194.262Gadus_morhua
ENSDARG00000061735hnrnpm9471.681ENSGALG00000000377HNRNPM9071.681Gallus_gallus
ENSDARG00000061735hnrnpm10073.622ENSGAFG00000013798hnrnpm7475.875Gambusia_affinis
ENSDARG00000061735hnrnpm10074.436ENSGACG00000010265hnrnpm9787.069Gasterosteus_aculeatus
ENSDARG00000061735hnrnpm10066.265ENSGAGG00000019124-9760.526Gopherus_agassizii
ENSDARG00000061735hnrnpm8770.796ENSGGOG00000003498HNRNPM9370.796Gorilla_gorilla
ENSDARG00000061735hnrnpm10083.122ENSHBUG00000023451hnrnpm7577.426Haplochromis_burtoni
ENSDARG00000061735hnrnpm8272.115ENSHGLG00000009796-9472.115Heterocephalus_glaber_female
ENSDARG00000061735hnrnpm8770.796ENSHGLG00100006675-7370.796Heterocephalus_glaber_male
ENSDARG00000061735hnrnpm10075.397ENSHCOG00000019984hnrnpm10069.275Hippocampus_comes
ENSDARG00000061735hnrnpm8770.796ENSSTOG00000008112HNRNPM9370.796Ictidomys_tridecemlineatus
ENSDARG00000061735hnrnpm10058.301ENSJJAG00000017319Hnrnpm9370.796Jaculus_jaculus
ENSDARG00000061735hnrnpm10068.864ENSLBEG00000004545hnrnpm7371.028Labrus_bergylta
ENSDARG00000061735hnrnpm10075.299ENSLOCG00000004456hnrnpm10070.126Lepisosteus_oculatus
ENSDARG00000061735hnrnpm10062.791ENSLAFG00000013603HNRNPM9771.171Loxodonta_africana
ENSDARG00000061735hnrnpm8770.796ENSMFAG00000037617HNRNPM9370.796Macaca_fascicularis
ENSDARG00000061735hnrnpm10061.538ENSMMUG00000018806HNRNPM9368.142Macaca_mulatta
ENSDARG00000061735hnrnpm8770.796ENSMNEG00000036546HNRNPM9368.142Macaca_nemestrina
ENSDARG00000061735hnrnpm8770.796ENSMLEG00000042113HNRNPM9370.796Mandrillus_leucophaeus
ENSDARG00000061735hnrnpm10074.806ENSMAMG00000005612hnrnpm7176.789Mastacembelus_armatus
ENSDARG00000061735hnrnpm10077.236ENSMZEG00005002512hnrnpm7376.008Maylandia_zebra
ENSDARG00000061735hnrnpm9471.681ENSMGAG00000000700HNRNPM9769.231Meleagris_gallopavo
ENSDARG00000061735hnrnpm8770.796ENSMAUG00000017476Hnrnpm9664.885Mesocricetus_auratus
ENSDARG00000061735hnrnpm10060.729ENSMICG00000002532-9170.796Microcebus_murinus
ENSDARG00000061735hnrnpm9356.889ENSMICG00000028503-9451.282Microcebus_murinus
ENSDARG00000061735hnrnpm8770.796ENSMOCG00000005769Hnrnpm9370.796Microtus_ochrogaster
ENSDARG00000061735hnrnpm10077.551ENSMMOG00000019610hnrnpm10069.337Mola_mola
ENSDARG00000061735hnrnpm10058.712ENSMODG00000003801-9451.884Monodelphis_domestica
ENSDARG00000061735hnrnpm8466.949ENSMODG00000003473-9369.912Monodelphis_domestica
ENSDARG00000061735hnrnpm8770.796MGP_CAROLIEiJ_G0021413Hnrnpm10048.525Mus_caroli
ENSDARG00000061735hnrnpm8771.681ENSMUSG00000059208Hnrnpm8381.707Mus_musculus
ENSDARG00000061735hnrnpm8770.796MGP_PahariEiJ_G0020418Hnrnpm7570.796Mus_pahari
ENSDARG00000061735hnrnpm8770.796MGP_SPRETEiJ_G0022325Hnrnpm9660.526Mus_spretus
ENSDARG00000061735hnrnpm9660.938ENSMPUG00000007241HNRNPM8668.142Mustela_putorius_furo
ENSDARG00000061735hnrnpm8570.796ENSMLUG00000025231-7480.882Myotis_lucifugus
ENSDARG00000061735hnrnpm8567.797ENSMLUG00000006696-9270.796Myotis_lucifugus
ENSDARG00000061735hnrnpm8744.444ENSNGAG00000017657-9656.522Nannospalax_galili
ENSDARG00000061735hnrnpm8770.175ENSNGAG00000003707Hnrnpm9470.175Nannospalax_galili
ENSDARG00000061735hnrnpm10077.642ENSNBRG00000015999hnrnpm7576.493Neolamprologus_brichardi
ENSDARG00000061735hnrnpm8771.681ENSMEUG00000004789HNRNPM9449.560Notamacropus_eugenii
ENSDARG00000061735hnrnpm8464.220ENSODEG00000011442-9559.836Octodon_degus
ENSDARG00000061735hnrnpm8367.327ENSODEG00000004347-9968.000Octodon_degus
ENSDARG00000061735hnrnpm9750.145ENSODEG00000010314-9258.779Octodon_degus
ENSDARG00000061735hnrnpm8560.504ENSODEG00000009194-9559.055Octodon_degus
ENSDARG00000061735hnrnpm10077.236ENSONIG00000001758hnrnpm7276.301Oreochromis_niloticus
ENSDARG00000061735hnrnpm7950.000ENSOANG00000010259HNRNPM10045.628Ornithorhynchus_anatinus
ENSDARG00000061735hnrnpm5658.544ENSOANG00000005883-8980.645Ornithorhynchus_anatinus
ENSDARG00000061735hnrnpm8267.797ENSOCUG00000000552-9270.796Oryctolagus_cuniculus
ENSDARG00000061735hnrnpm6145.520ENSOCUG00000023204-9948.594Oryctolagus_cuniculus
ENSDARG00000061735hnrnpm8567.797ENSOCUG00000024611-6670.796Oryctolagus_cuniculus
ENSDARG00000061735hnrnpm10081.513ENSORLG00000005400hnrnpm7478.131Oryzias_latipes
ENSDARG00000061735hnrnpm10081.092ENSORLG00020022108hnrnpm7577.932Oryzias_latipes_hni
ENSDARG00000061735hnrnpm10077.200ENSORLG00015019809hnrnpm7576.402Oryzias_latipes_hsok
ENSDARG00000061735hnrnpm10079.032ENSOMEG00000013075hnrnpm7278.337Oryzias_melastigma
ENSDARG00000061735hnrnpm8567.797ENSOGAG00000030987HNRNPM9270.796Otolemur_garnettii
ENSDARG00000061735hnrnpm7162.941ENSOGAG00000032900-7268.000Otolemur_garnettii
ENSDARG00000061735hnrnpm8565.254ENSOARG00000003961HNRNPM9368.142Ovis_aries
ENSDARG00000061735hnrnpm8770.796ENSPPAG00000039365HNRNPM8278.400Pan_paniscus
ENSDARG00000061735hnrnpm8770.796ENSPPRG00000009284HNRNPM9370.796Panthera_pardus
ENSDARG00000061735hnrnpm8770.796ENSPTIG00000003024HNRNPM9448.505Panthera_tigris_altaica
ENSDARG00000061735hnrnpm8770.796ENSPTRG00000010424HNRNPM8278.400Pan_troglodytes
ENSDARG00000061735hnrnpm8770.796ENSPANG00000000283HNRNPM9370.796Papio_anubis
ENSDARG00000061735hnrnpm10077.778ENSPKIG00000001332hnrnpm10070.629Paramormyrops_kingsleyae
ENSDARG00000061735hnrnpm10061.088ENSPSIG00000011477HNRNPM8570.085Pelodiscus_sinensis
ENSDARG00000061735hnrnpm10076.230ENSPMGG00000012793hnrnpm7473.501Periophthalmus_magnuspinnatus
ENSDARG00000061735hnrnpm8770.796ENSPEMG00000009260Hnrnpm9370.796Peromyscus_maniculatus_bairdii
ENSDARG00000061735hnrnpm9464.435ENSPCIG00000020115HNRNPM9364.103Phascolarctos_cinereus
ENSDARG00000061735hnrnpm10072.093ENSPFOG00000013612hnrnpm9676.812Poecilia_formosa
ENSDARG00000061735hnrnpm9970.370ENSPLAG00000011139hnrnpm7373.643Poecilia_latipinna
ENSDARG00000061735hnrnpm10070.248ENSPMEG00000011182hnrnpm7375.800Poecilia_mexicana
ENSDARG00000061735hnrnpm10073.643ENSPREG00000016114hnrnpm7276.550Poecilia_reticulata
ENSDARG00000061735hnrnpm8567.797ENSPPYG00000009506HNRNPM9370.796Pongo_abelii
ENSDARG00000061735hnrnpm8769.912ENSPCAG00000009678HNRNPM9169.912Procavia_capensis
ENSDARG00000061735hnrnpm10059.761ENSPCOG00000020227HNRNPM9170.796Propithecus_coquereli
ENSDARG00000061735hnrnpm8770.796ENSPVAG00000009647HNRNPM9364.122Pteropus_vampyrus
ENSDARG00000061735hnrnpm10083.122ENSPNYG00000006542hnrnpm7672.727Pundamilia_nyererei
ENSDARG00000061735hnrnpm10080.247ENSPNAG00000020740hnrnpm5082.700Pygocentrus_nattereri
ENSDARG00000061735hnrnpm8770.796ENSRNOG00000007921Hnrnpm9370.796Rattus_norvegicus
ENSDARG00000061735hnrnpm9459.829ENSRBIG00000039870-9268.376Rhinopithecus_bieti
ENSDARG00000061735hnrnpm9654.701ENSRBIG00000041503HNRNPM9060.000Rhinopithecus_bieti
ENSDARG00000061735hnrnpm8770.796ENSRROG00000038240-9370.796Rhinopithecus_roxellana
ENSDARG00000061735hnrnpm9659.829ENSRROG00000033189-6567.460Rhinopithecus_roxellana
ENSDARG00000061735hnrnpm10061.538ENSSBOG00000032416HNRNPM9268.376Saimiri_boliviensis_boliviensis
ENSDARG00000061735hnrnpm9951.636ENSSBOG00000022413-7845.802Saimiri_boliviensis_boliviensis
ENSDARG00000061735hnrnpm9967.623ENSSHAG00000005864HNRNPM9771.111Sarcophilus_harrisii
ENSDARG00000061735hnrnpm10073.810ENSSFOG00015008815hnrnpm10069.081Scleropages_formosus
ENSDARG00000061735hnrnpm10074.902ENSSMAG00000003992hnrnpm5366.300Scophthalmus_maximus
ENSDARG00000061735hnrnpm8782.692ENSSDUG00000002188hnrnpm9094.898Seriola_dumerili
ENSDARG00000061735hnrnpm10077.778ENSSLDG00000016713hnrnpm7473.694Seriola_lalandi_dorsalis
ENSDARG00000061735hnrnpm7983.099ENSSARG00000000267HNRNPM6383.099Sorex_araneus
ENSDARG00000061735hnrnpm10060.833ENSSPUG00000002270HNRNPM9464.957Sphenodon_punctatus
ENSDARG00000061735hnrnpm10082.700ENSSPAG00000023132hnrnpm7577.470Stegastes_partitus
ENSDARG00000061735hnrnpm9659.829ENSSSCG00000013602HNRNPM9370.796Sus_scrofa
ENSDARG00000061735hnrnpm10055.777ENSTGUG00000000938HNRNPM5567.273Taeniopygia_guttata
ENSDARG00000061735hnrnpm10078.151ENSTRUG00000013783hnrnpm9781.982Takifugu_rubripes
ENSDARG00000061735hnrnpm10070.943ENSTNIG00000015530hnrnpm10064.993Tetraodon_nigroviridis
ENSDARG00000061735hnrnpm6379.054ENSTBEG00000008718HNRNPM6378.912Tupaia_belangeri
ENSDARG00000061735hnrnpm8080.328ENSTTRG00000009769HNRNPM8780.488Tursiops_truncatus
ENSDARG00000061735hnrnpm9661.328ENSUAMG00000005710HNRNPM9960.526Ursus_americanus
ENSDARG00000061735hnrnpm7670.157ENSUMAG00000014575HNRNPM9848.815Ursus_maritimus
ENSDARG00000061735hnrnpm8770.796ENSVPAG00000004215HNRNPM9170.796Vicugna_pacos
ENSDARG00000061735hnrnpm9661.328ENSVVUG00000024984HNRNPM9960.526Vulpes_vulpes
ENSDARG00000061735hnrnpm10057.197ENSXETG00000001777hnrnpm9956.818Xenopus_tropicalis
ENSDARG00000061735hnrnpm10072.093ENSXCOG00000002651hnrnpm7570.930Xiphophorus_couchianus
ENSDARG00000061735hnrnpm10072.093ENSXMAG00000018502hnrnpm7976.938Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000398mRNA splicing, via spliceosome-IEAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0003729mRNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0071014post-mRNA release spliceosomal complex21873635.IBAComponent
GO:1990904ribonucleoprotein complex21873635.IBAComponent
GO:2000815regulation of mRNA stability involved in response to oxidative stress21873635.IBAProcess

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