EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000061864 (Gene tree)
Gene ID: 555414
Gene Symbol: hdlbpb
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: high density lipoprotein binding protein b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 40954 bases
Position: chr12:22404108-22445061
Accession: ZDB-GENE-030131-6822
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000127252	KH_1	PF00013.29	1e-184	1	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	2	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	3	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	4	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	5	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	6	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	7	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	8	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	9	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	10	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	11	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	12	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	13	14
ENSDARP00000127252	KH_1	PF00013.29	1e-184	14	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	1	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	2	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	3	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	4	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	5	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	6	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	7	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	8	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	9	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	10	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	11	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	12	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	13	14
ENSDARP00000144455	KH_1	PF00013.29	1e-184	14	14

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000153055	-	4622	XM_021480308	ENSDARP00000127252	1259 (aa)	XP_021335983	E7FCA5
ENSDART00000153238	-	503	-	-	- (aa)	-	-
ENSDART00000153050	-	836	-	-	- (aa)	-	-
ENSDART00000178840	-	3780	-	ENSDARP00000144455	1259 (aa)	-	E7FCA5

Gene Model

Click here to download ENSDARG00000061864's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000061864's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000061864	hdlbpb	99	69.725	ENSDARG00000009830	hdlbpa	100	72.447

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000061864	hdlbpb	99	85.872	ENSAPOG00000006904	hdlbpb	99	85.872	Acanthochromis_polyacanthus
ENSDARG00000061864	hdlbpb	99	82.134	ENSACIG00000016154	hdlbpb	99	82.372	Amphilophus_citrinellus
ENSDARG00000061864	hdlbpb	99	85.951	ENSAOCG00000004083	hdlbpb	99	85.951	Amphiprion_ocellaris
ENSDARG00000061864	hdlbpb	99	85.872	ENSAPEG00000012270	hdlbpb	99	85.872	Amphiprion_percula
ENSDARG00000061864	hdlbpb	99	85.635	ENSATEG00000019877	hdlbpb	99	85.635	Anabas_testudineus
ENSDARG00000061864	hdlbpb	99	80.032	ENSACAG00000003606	-	99	80.032	Anolis_carolinensis
ENSDARG00000061864	hdlbpb	99	85.399	ENSACLG00000006618	hdlbpb	99	85.478	Astatotilapia_calliptera
ENSDARG00000061864	hdlbpb	99	78.848	ENSAMXG00000019946	hdlbpb	99	78.848	Astyanax_mexicanus
ENSDARG00000061864	hdlbpb	99	84.281	ENSCSEG00000000955	hdlbpb	99	84.360	Cynoglossus_semilaevis
ENSDARG00000061864	hdlbpb	99	85.241	ENSCVAG00000005345	hdlbpb	99	85.320	Cyprinodon_variegatus
ENSDARG00000061864	hdlbpb	93	69.863	ENSEBUG00000005304	hdlbpb	96	69.692	Eptatretus_burgeri
ENSDARG00000061864	hdlbpb	99	75.039	ENSELUG00000019925	hdlbpb	99	75.276	Esox_lucius
ENSDARG00000061864	hdlbpb	99	80.727	ENSFHEG00000001701	hdlbpb	99	80.727	Fundulus_heteroclitus
ENSDARG00000061864	hdlbpb	95	83.570	ENSGMOG00000004522	hdlbpb	78	83.570	Gadus_morhua
ENSDARG00000061864	hdlbpb	99	85.241	ENSGAFG00000005278	hdlbpb	99	85.241	Gambusia_affinis
ENSDARG00000061864	hdlbpb	99	83.175	ENSGACG00000019361	hdlbpb	100	83.175	Gasterosteus_aculeatus
ENSDARG00000061864	hdlbpb	99	85.241	ENSHBUG00000018434	hdlbpb	99	85.320	Haplochromis_burtoni
ENSDARG00000061864	hdlbpb	99	86.719	ENSIPUG00000003291	HDLBP	100	87.860	Ictalurus_punctatus
ENSDARG00000061864	hdlbpb	99	85.399	ENSKMAG00000016562	hdlbpb	99	85.399	Kryptolebias_marmoratus
ENSDARG00000061864	hdlbpb	99	85.478	ENSLBEG00000027855	hdlbpb	99	85.478	Labrus_bergylta
ENSDARG00000061864	hdlbpb	99	69.755	ENSLACG00000007661	hdlbpb	92	82.874	Latimeria_chalumnae
ENSDARG00000061864	hdlbpb	99	81.473	ENSLOCG00000013909	hdlbpb	99	81.473	Lepisosteus_oculatus
ENSDARG00000061864	hdlbpb	99	85.872	ENSMAMG00000003035	hdlbpb	99	85.872	Mastacembelus_armatus
ENSDARG00000061864	hdlbpb	99	85.399	ENSMZEG00005021465	hdlbpb	99	85.478	Maylandia_zebra
ENSDARG00000061864	hdlbpb	99	84.822	ENSMMOG00000012525	hdlbpb	99	84.901	Mola_mola
ENSDARG00000061864	hdlbpb	99	83.899	ENSMALG00000008938	hdlbpb	99	83.899	Monopterus_albus
ENSDARG00000061864	hdlbpb	99	85.399	ENSNBRG00000002236	hdlbpb	99	85.478	Neolamprologus_brichardi
ENSDARG00000061864	hdlbpb	99	85.320	ENSONIG00000009211	hdlbpb	100	85.118	Oreochromis_niloticus
ENSDARG00000061864	hdlbpb	99	85.150	ENSORLG00000006581	hdlbpb	99	85.150	Oryzias_latipes
ENSDARG00000061864	hdlbpb	99	85.229	ENSORLG00020010012	hdlbpb	99	85.229	Oryzias_latipes_hni
ENSDARG00000061864	hdlbpb	99	85.229	ENSORLG00015006863	hdlbpb	99	85.229	Oryzias_latipes_hsok
ENSDARG00000061864	hdlbpb	99	85.387	ENSOMEG00000011131	hdlbpb	99	85.391	Oryzias_melastigma
ENSDARG00000061864	hdlbpb	99	86.529	ENSPKIG00000005966	hdlbpb	99	86.609	Paramormyrops_kingsleyae
ENSDARG00000061864	hdlbpb	91	88.611	ENSPMGG00000019853	hdlbpb	99	88.611	Periophthalmus_magnuspinnatus
ENSDARG00000061864	hdlbpb	88	64.214	ENSPMAG00000000249	-	99	63.754	Petromyzon_marinus
ENSDARG00000061864	hdlbpb	94	73.494	ENSPMAG00000002131	hdlbpb	100	73.494	Petromyzon_marinus
ENSDARG00000061864	hdlbpb	99	84.621	ENSPFOG00000008755	hdlbpb	99	84.621	Poecilia_formosa
ENSDARG00000061864	hdlbpb	99	85.556	ENSPLAG00000007055	hdlbpb	99	85.556	Poecilia_latipinna
ENSDARG00000061864	hdlbpb	99	85.793	ENSPMEG00000001952	hdlbpb	99	85.793	Poecilia_mexicana
ENSDARG00000061864	hdlbpb	99	85.399	ENSPREG00000012848	hdlbpb	99	85.399	Poecilia_reticulata
ENSDARG00000061864	hdlbpb	99	85.229	ENSPNYG00000022467	hdlbpb	99	85.622	Pundamilia_nyererei
ENSDARG00000061864	hdlbpb	99	89.303	ENSPNAG00000011104	hdlbpb	99	89.303	Pygocentrus_nattereri
ENSDARG00000061864	hdlbpb	99	85.895	ENSSFOG00015023199	hdlbpb	99	85.895	Scleropages_formosus
ENSDARG00000061864	hdlbpb	99	85.635	ENSSMAG00000008790	hdlbpb	99	85.714	Scophthalmus_maximus
ENSDARG00000061864	hdlbpb	99	85.308	ENSSDUG00000020694	hdlbpb	99	85.308	Seriola_dumerili
ENSDARG00000061864	hdlbpb	99	85.261	ENSSLDG00000020807	hdlbpb	99	85.261	Seriola_lalandi_dorsalis
ENSDARG00000061864	hdlbpb	99	80.428	ENSSPUG00000018688	-	99	80.428	Sphenodon_punctatus
ENSDARG00000061864	hdlbpb	99	85.714	ENSSPAG00000016969	hdlbpb	99	85.714	Stegastes_partitus
ENSDARG00000061864	hdlbpb	98	82.805	ENSTRUG00000012888	hdlbpb	99	82.805	Takifugu_rubripes
ENSDARG00000061864	hdlbpb	99	84.169	ENSTNIG00000002555	hdlbpb	100	84.169	Tetraodon_nigroviridis
ENSDARG00000061864	hdlbpb	99	64.502	ENSXCOG00000001797	hdlbpb	99	64.413	Xiphophorus_couchianus
ENSDARG00000061864	hdlbpb	99	84.925	ENSXMAG00000015633	hdlbpb	99	84.925	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function