EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000061985 (Gene tree)
Gene ID: 562991
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 49768 bases
Position: chr1:19353048-19402815
Accession: ZDB-GENE-030131-9612
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000116938	RRM_1	PF00076.22	6.2e-39	1	3
ENSDARP00000116938	RRM_1	PF00076.22	6.2e-39	2	3
ENSDARP00000116938	RRM_1	PF00076.22	6.2e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000134861	-	306	-	-	- (aa)	-	-
ENSDART00000135552	-	7222	XM_005168359	ENSDARP00000116938	600 (aa)	XP_005168416	A2BIC5
ENSDART00000145224	-	499	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000061985's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000061985's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000061985	rbm47	51	65.260	ENSDARG00000079452	rbm46	60	67.208
ENSDARG00000061985	rbm47	60	50.138	ENSDARG00000026723	syncripl	90	56.364
ENSDARG00000061985	rbm47	52	53.333	ENSDARG00000040184	syncrip	91	55.300
ENSDARG00000061985	rbm47	90	51.418	ENSDARG00000002968	a1cf	90	50.805

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000061985	rbm47	95	77.855	ENSG00000163694	RBM47	100	81.223	Homo_sapiens
ENSDARG00000061985	rbm47	100	86.957	ENSAPOG00000011062	rbm47	100	86.445	Acanthochromis_polyacanthus
ENSDARG00000061985	rbm47	95	76.511	ENSAMEG00000009672	RBM47	100	75.817	Ailuropoda_melanoleuca
ENSDARG00000061985	rbm47	100	81.414	ENSACIG00000011531	rbm47	100	81.743	Amphilophus_citrinellus
ENSDARG00000061985	rbm47	100	87.212	ENSAOCG00000022245	rbm47	100	86.957	Amphiprion_ocellaris
ENSDARG00000061985	rbm47	100	87.212	ENSAPEG00000018304	rbm47	100	86.957	Amphiprion_percula
ENSDARG00000061985	rbm47	100	84.072	ENSATEG00000018400	rbm47	100	83.087	Anabas_testudineus
ENSDARG00000061985	rbm47	100	75.822	ENSAPLG00000013974	RBM47	96	78.646	Anas_platyrhynchos
ENSDARG00000061985	rbm47	100	75.244	ENSACAG00000011833	RBM47	96	77.491	Anolis_carolinensis
ENSDARG00000061985	rbm47	100	75.654	ENSANAG00000029440	RBM47	98	80.702	Aotus_nancymaae
ENSDARG00000061985	rbm47	100	86.616	ENSACLG00000016902	rbm47	99	87.212	Astatotilapia_calliptera
ENSDARG00000061985	rbm47	100	89.718	ENSAMXG00000021794	rbm47	100	89.718	Astyanax_mexicanus
ENSDARG00000061985	rbm47	100	76.606	ENSBTAG00000002356	RBM47	100	77.265	Bos_taurus
ENSDARG00000061985	rbm47	95	78.087	ENSCJAG00000019385	RBM47	98	80.702	Callithrix_jacchus
ENSDARG00000061985	rbm47	94	78.185	ENSCAFG00000015898	RBM47	100	76.771	Canis_familiaris
ENSDARG00000061985	rbm47	81	83.333	ENSCAFG00020010558	RBM47	94	79.897	Canis_lupus_dingo
ENSDARG00000061985	rbm47	100	76.606	ENSCHIG00000026214	RBM47	100	77.265	Capra_hircus
ENSDARG00000061985	rbm47	84	67.969	ENSTSYG00000033612	RBM47	93	68.164	Carlito_syrichta
ENSDARG00000061985	rbm47	100	71.148	ENSCAPG00000008426	RBM47	100	71.475	Cavia_aperea
ENSDARG00000061985	rbm47	100	75.777	ENSCPOG00000014100	RBM47	100	76.759	Cavia_porcellus
ENSDARG00000061985	rbm47	100	76.277	ENSCCAG00000030129	-	98	80.451	Cebus_capucinus
ENSDARG00000061985	rbm47	99	53.554	ENSCCAG00000024397	-	99	54.036	Cebus_capucinus
ENSDARG00000061985	rbm47	95	78.671	ENSCATG00000042064	RBM47	96	81.378	Cercocebus_atys
ENSDARG00000061985	rbm47	95	77.739	ENSCLAG00000001684	RBM47	100	76.471	Chinchilla_lanigera
ENSDARG00000061985	rbm47	95	77.855	ENSCSAG00000017060	RBM47	100	76.268	Chlorocebus_sabaeus
ENSDARG00000061985	rbm47	84	76.777	ENSCHOG00000011731	RBM47	88	74.286	Choloepus_hoffmanni
ENSDARG00000061985	rbm47	100	78.723	ENSCPBG00000013831	RBM47	96	80.969	Chrysemys_picta_bellii
ENSDARG00000061985	rbm47	95	78.709	ENSCANG00000019997	RBM47	96	81.122	Colobus_angolensis_palliatus
ENSDARG00000061985	rbm47	100	79.747	ENSCGRG00001000623	-	96	78.028	Cricetulus_griseus_chok1gshd
ENSDARG00000061985	rbm47	100	59.000	ENSCGRG00001020102	-	96	65.432	Cricetulus_griseus_chok1gshd
ENSDARG00000061985	rbm47	100	58.667	ENSCGRG00000014760	-	96	65.432	Cricetulus_griseus_crigri
ENSDARG00000061985	rbm47	100	74.262	ENSCGRG00000007762	-	87	88.321	Cricetulus_griseus_crigri
ENSDARG00000061985	rbm47	95	82.465	ENSCSEG00000004545	rbm47	100	79.803	Cynoglossus_semilaevis
ENSDARG00000061985	rbm47	100	82.871	ENSCVAG00000020144	rbm47	100	85.427	Cyprinodon_variegatus
ENSDARG00000061985	rbm47	95	79.438	ENSDNOG00000046854	RBM47	100	77.907	Dasypus_novemcinctus
ENSDARG00000061985	rbm47	100	76.183	ENSDORG00000010144	Rbm47	100	75.856	Dipodomys_ordii
ENSDARG00000061985	rbm47	95	78.201	ENSETEG00000009194	RBM47	100	75.777	Echinops_telfairi
ENSDARG00000061985	rbm47	93	60.348	ENSEBUG00000011912	rbm47	95	61.996	Eptatretus_burgeri
ENSDARG00000061985	rbm47	95	78.397	ENSEASG00005008443	RBM47	100	76.936	Equus_asinus_asinus
ENSDARG00000061985	rbm47	95	78.397	ENSECAG00000004400	RBM47	100	76.936	Equus_caballus
ENSDARG00000061985	rbm47	70	88.038	ENSEEUG00000001194	RBM47	75	81.405	Erinaceus_europaeus
ENSDARG00000061985	rbm47	100	79.902	ENSELUG00000006148	rbm47	100	84.788	Esox_lucius
ENSDARG00000061985	rbm47	95	78.883	ENSFCAG00000012399	RBM47	100	77.558	Felis_catus
ENSDARG00000061985	rbm47	100	77.541	ENSFALG00000002861	RBM47	96	80.243	Ficedula_albicollis
ENSDARG00000061985	rbm47	100	75.783	ENSFDAG00000016326	RBM47	100	75.534	Fukomys_damarensis
ENSDARG00000061985	rbm47	100	83.663	ENSFHEG00000007938	rbm47	100	82.343	Fundulus_heteroclitus
ENSDARG00000061985	rbm47	100	79.483	ENSGMOG00000014802	rbm47	100	79.450	Gadus_morhua
ENSDARG00000061985	rbm47	65	83.290	ENSGALG00000014267	RBM47	100	82.262	Gallus_gallus
ENSDARG00000061985	rbm47	63	86.544	ENSGAFG00000020571	rbm47	98	84.615	Gambusia_affinis
ENSDARG00000061985	rbm47	100	80.984	ENSGACG00000016223	rbm47	100	83.417	Gasterosteus_aculeatus
ENSDARG00000061985	rbm47	100	78.723	ENSGAGG00000020051	RBM47	96	80.969	Gopherus_agassizii
ENSDARG00000061985	rbm47	95	78.671	ENSGGOG00000001367	RBM47	96	81.378	Gorilla_gorilla
ENSDARG00000061985	rbm47	100	81.981	ENSHBUG00000003520	rbm47	100	82.630	Haplochromis_burtoni
ENSDARG00000061985	rbm47	85	63.753	ENSHGLG00000016914	RBM47	100	77.059	Heterocephalus_glaber_female
ENSDARG00000061985	rbm47	100	68.647	ENSHGLG00100003071	-	100	68.317	Heterocephalus_glaber_male
ENSDARG00000061985	rbm47	100	80.000	ENSHGLG00100014028	-	100	77.059	Heterocephalus_glaber_male
ENSDARG00000061985	rbm47	99	85.934	ENSHCOG00000002074	rbm47	99	85.934	Hippocampus_comes
ENSDARG00000061985	rbm47	100	89.221	ENSIPUG00000004743	rbm47	100	89.221	Ictalurus_punctatus
ENSDARG00000061985	rbm47	95	76.857	ENSSTOG00000004727	RBM47	100	75.980	Ictidomys_tridecemlineatus
ENSDARG00000061985	rbm47	95	79.029	ENSJJAG00000013823	Rbm47	100	76.885	Jaculus_jaculus
ENSDARG00000061985	rbm47	100	82.680	ENSKMAG00000000084	rbm47	100	85.678	Kryptolebias_marmoratus
ENSDARG00000061985	rbm47	100	82.208	ENSLBEG00000008436	rbm47	99	85.459	Labrus_bergylta
ENSDARG00000061985	rbm47	100	77.340	ENSLACG00000007196	RBM47	100	77.011	Latimeria_chalumnae
ENSDARG00000061985	rbm47	95	86.237	ENSLOCG00000012966	rbm47	95	82.810	Lepisosteus_oculatus
ENSDARG00000061985	rbm47	100	75.456	ENSLAFG00000011998	RBM47	100	75.246	Loxodonta_africana
ENSDARG00000061985	rbm47	95	78.671	ENSMFAG00000037967	RBM47	96	81.378	Macaca_fascicularis
ENSDARG00000061985	rbm47	95	77.855	ENSMMUG00000012036	RBM47	100	79.024	Macaca_mulatta
ENSDARG00000061985	rbm47	95	78.846	ENSMNEG00000040774	RBM47	96	81.330	Macaca_nemestrina
ENSDARG00000061985	rbm47	95	87.075	ENSMLEG00000041432	RBM47	100	82.569	Mandrillus_leucophaeus
ENSDARG00000061985	rbm47	100	83.361	ENSMAMG00000019143	rbm47	100	86.598	Mastacembelus_armatus
ENSDARG00000061985	rbm47	100	82.085	ENSMZEG00005023659	rbm47	99	87.212	Maylandia_zebra
ENSDARG00000061985	rbm47	100	77.977	ENSMGAG00000012226	RBM47	96	80.000	Meleagris_gallopavo
ENSDARG00000061985	rbm47	100	80.102	ENSMAUG00000006493	Rbm47	100	77.059	Mesocricetus_auratus
ENSDARG00000061985	rbm47	94	81.742	ENSMICG00000026417	RBM47	96	78.910	Microcebus_murinus
ENSDARG00000061985	rbm47	100	79.241	ENSMOCG00000021170	Rbm47	100	75.882	Microtus_ochrogaster
ENSDARG00000061985	rbm47	100	82.895	ENSMMOG00000007260	rbm47	100	82.895	Mola_mola
ENSDARG00000061985	rbm47	100	72.185	ENSMODG00000020561	-	96	76.182	Monodelphis_domestica
ENSDARG00000061985	rbm47	100	77.504	ENSMODG00000007003	RBM47	100	76.847	Monodelphis_domestica
ENSDARG00000061985	rbm47	52	77.259	ENSMODG00000015426	-	100	77.259	Monodelphis_domestica
ENSDARG00000061985	rbm47	100	86.118	ENSMALG00000005167	rbm47	100	86.118	Monopterus_albus
ENSDARG00000061985	rbm47	100	79.241	MGP_CAROLIEiJ_G0027258	Rbm47	100	76.471	Mus_caroli
ENSDARG00000061985	rbm47	100	79.241	ENSMUSG00000070780	Rbm47	100	76.471	Mus_musculus
ENSDARG00000061985	rbm47	100	79.241	MGP_PahariEiJ_G0017040	Rbm47	100	76.471	Mus_pahari
ENSDARG00000061985	rbm47	100	79.241	MGP_SPRETEiJ_G0028253	Rbm47	100	76.529	Mus_spretus
ENSDARG00000061985	rbm47	95	77.951	ENSMPUG00000006177	RBM47	94	76.190	Mustela_putorius_furo
ENSDARG00000061985	rbm47	100	77.393	ENSMLUG00000000889	RBM47	100	77.063	Myotis_lucifugus
ENSDARG00000061985	rbm47	100	75.246	ENSNGAG00000003325	Rbm47	100	75.574	Nannospalax_galili
ENSDARG00000061985	rbm47	100	82.114	ENSNBRG00000015092	rbm47	100	82.602	Neolamprologus_brichardi
ENSDARG00000061985	rbm47	95	83.978	ENSNLEG00000017151	RBM47	96	81.378	Nomascus_leucogenys
ENSDARG00000061985	rbm47	70	79.717	ENSMEUG00000009516	-	99	79.717	Notamacropus_eugenii
ENSDARG00000061985	rbm47	76	85.124	ENSOPRG00000016507	-	75	85.124	Ochotona_princeps
ENSDARG00000061985	rbm47	95	77.043	ENSODEG00000004873	RBM47	100	75.987	Octodon_degus
ENSDARG00000061985	rbm47	100	83.497	ENSONIG00000009061	rbm47	100	82.843	Oreochromis_niloticus
ENSDARG00000061985	rbm47	100	77.243	ENSOANG00000008978	RBM47	100	77.907	Ornithorhynchus_anatinus
ENSDARG00000061985	rbm47	100	75.862	ENSOCUG00000012034	RBM47	100	76.771	Oryctolagus_cuniculus
ENSDARG00000061985	rbm47	100	81.518	ENSORLG00000005847	rbm47	100	81.683	Oryzias_latipes
ENSDARG00000061985	rbm47	100	81.518	ENSORLG00020005154	rbm47	100	81.683	Oryzias_latipes_hni
ENSDARG00000061985	rbm47	100	86.082	ENSORLG00015000066	rbm47	100	81.713	Oryzias_latipes_hsok
ENSDARG00000061985	rbm47	100	83.361	ENSOMEG00000010730	rbm47	100	82.208	Oryzias_melastigma
ENSDARG00000061985	rbm47	95	71.853	ENSOGAG00000025193	-	100	70.579	Otolemur_garnettii
ENSDARG00000061985	rbm47	95	78.299	ENSOGAG00000029367	-	100	76.683	Otolemur_garnettii
ENSDARG00000061985	rbm47	100	68.812	ENSOARG00000012711	RBM47	100	69.802	Ovis_aries
ENSDARG00000061985	rbm47	95	78.671	ENSPPAG00000029763	RBM47	96	81.378	Pan_paniscus
ENSDARG00000061985	rbm47	95	83.196	ENSPPRG00000012873	RBM47	100	75.083	Panthera_pardus
ENSDARG00000061985	rbm47	83	77.046	ENSPTIG00000017046	RBM47	100	77.246	Panthera_tigris_altaica
ENSDARG00000061985	rbm47	95	78.671	ENSPTRG00000016006	RBM47	96	81.378	Pan_troglodytes
ENSDARG00000061985	rbm47	95	78.671	ENSPANG00000005980	RBM47	96	81.633	Papio_anubis
ENSDARG00000061985	rbm47	95	79.545	ENSPKIG00000013431	RBM47	100	76.198	Paramormyrops_kingsleyae
ENSDARG00000061985	rbm47	95	80.911	ENSPKIG00000005037	rbm47	100	79.139	Paramormyrops_kingsleyae
ENSDARG00000061985	rbm47	89	80.037	ENSPSIG00000017516	RBM47	93	83.071	Pelodiscus_sinensis
ENSDARG00000061985	rbm47	95	83.421	ENSPMGG00000018540	rbm47	100	81.353	Periophthalmus_magnuspinnatus
ENSDARG00000061985	rbm47	100	78.987	ENSPEMG00000011088	Rbm47	100	75.738	Peromyscus_maniculatus_bairdii
ENSDARG00000061985	rbm47	100	82.602	ENSPFOG00000007997	rbm47	100	81.951	Poecilia_formosa
ENSDARG00000061985	rbm47	100	82.573	ENSPLAG00000002072	rbm47	100	81.922	Poecilia_latipinna
ENSDARG00000061985	rbm47	100	82.927	ENSPMEG00000017492	rbm47	100	86.189	Poecilia_mexicana
ENSDARG00000061985	rbm47	100	82.573	ENSPREG00000008456	rbm47	100	86.445	Poecilia_reticulata
ENSDARG00000061985	rbm47	95	69.007	ENSPPYG00000014688	RBM47	98	68.836	Pongo_abelii
ENSDARG00000061985	rbm47	82	79.369	ENSPCAG00000011879	RBM47	81	79.854	Procavia_capensis
ENSDARG00000061985	rbm47	94	82.548	ENSPCOG00000023451	RBM47	100	76.033	Propithecus_coquereli
ENSDARG00000061985	rbm47	95	79.029	ENSPVAG00000003812	RBM47	100	76.721	Pteropus_vampyrus
ENSDARG00000061985	rbm47	100	81.848	ENSPNYG00000022868	rbm47	100	82.496	Pundamilia_nyererei
ENSDARG00000061985	rbm47	100	89.404	ENSPNAG00000007940	rbm47	100	89.570	Pygocentrus_nattereri
ENSDARG00000061985	rbm47	100	75.329	ENSRNOG00000002408	Rbm47	100	76.151	Rattus_norvegicus
ENSDARG00000061985	rbm47	95	78.709	ENSRBIG00000039601	RBM47	96	81.122	Rhinopithecus_bieti
ENSDARG00000061985	rbm47	95	78.709	ENSRROG00000044696	RBM47	96	81.122	Rhinopithecus_roxellana
ENSDARG00000061985	rbm47	100	74.007	ENSSBOG00000028475	RBM47	97	81.841	Saimiri_boliviensis_boliviensis
ENSDARG00000061985	rbm47	100	76.733	ENSSHAG00000017576	RBM47	100	77.595	Sarcophilus_harrisii
ENSDARG00000061985	rbm47	98	79.966	ENSSFOG00015024101	RBM47	97	81.142	Scleropages_formosus
ENSDARG00000061985	rbm47	100	81.032	ENSSFOG00015012445	rbm47	100	81.032	Scleropages_formosus
ENSDARG00000061985	rbm47	100	82.702	ENSSMAG00000009744	rbm47	99	85.422	Scophthalmus_maximus
ENSDARG00000061985	rbm47	100	83.740	ENSSDUG00000022684	rbm47	100	82.764	Seriola_dumerili
ENSDARG00000061985	rbm47	100	86.329	ENSSLDG00000003109	rbm47	100	85.823	Seriola_lalandi_dorsalis
ENSDARG00000061985	rbm47	85	78.043	ENSSARG00000001735	RBM47	84	78.478	Sorex_araneus
ENSDARG00000061985	rbm47	100	82.776	ENSSPUG00000007515	RBM47	96	79.965	Sphenodon_punctatus
ENSDARG00000061985	rbm47	100	87.468	ENSSPAG00000001257	rbm47	100	86.957	Stegastes_partitus
ENSDARG00000061985	rbm47	95	79.232	ENSSSCG00000008796	RBM47	100	77.393	Sus_scrofa
ENSDARG00000061985	rbm47	100	77.668	ENSTGUG00000008705	RBM47	96	80.382	Taeniopygia_guttata
ENSDARG00000061985	rbm47	100	81.488	ENSTRUG00000014050	rbm47	98	83.798	Takifugu_rubripes
ENSDARG00000061985	rbm47	100	81.713	ENSTNIG00000006127	rbm47	100	82.043	Tetraodon_nigroviridis
ENSDARG00000061985	rbm47	73	82.817	ENSTBEG00000001607	RBM47	76	79.124	Tupaia_belangeri
ENSDARG00000061985	rbm47	95	79.685	ENSTTRG00000002839	RBM47	100	77.483	Tursiops_truncatus
ENSDARG00000061985	rbm47	95	77.778	ENSUAMG00000021346	RBM47	100	76.355	Ursus_americanus
ENSDARG00000061985	rbm47	52	83.200	ENSVPAG00000000641	-	56	74.522	Vicugna_pacos
ENSDARG00000061985	rbm47	94	79.196	ENSVVUG00000014774	RBM47	100	77.393	Vulpes_vulpes
ENSDARG00000061985	rbm47	100	76.480	ENSXETG00000012802	rbm47	100	76.480	Xenopus_tropicalis
ENSDARG00000061985	rbm47	89	85.013	ENSXCOG00000000780	rbm47	100	85.013	Xiphophorus_couchianus
ENSDARG00000061985	rbm47	100	82.219	ENSXMAG00000009874	rbm47	100	86.445	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0016554	cytidine to uridine editing	-	IEA	Process
GO:0060322	head development	24038582.	IMP	Process
GO:2000742	regulation of anterior head development	24038582.	IGI	Process