EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000062206 (Gene tree)
Gene ID: 559653
Gene Symbol: skiv2l
Alias: fb70b07|wu:fb70b07
Full Name: SKI2 homolog%2C superkiller viralicidic activity 2-like
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 54530 bases
Position: chr19:26869428-26923957
Accession: ZDB-GENE-010430-5
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000146737	rRNA_proc-arch	PF13234.6	3e-29	1	1
ENSDARP00000084042	rRNA_proc-arch	PF13234.6	3.1e-29	1	1
ENSDARP00000084042	DEAD	PF00270.29	9.7e-17	1	1
ENSDARP00000146737	DEAD	PF00270.29	2.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000145256	-	789	-	-	- (aa)	-	-
ENSDART00000182390	-	8216	-	ENSDARP00000146737	1277 (aa)	-	A0A2R8Q6L8
ENSDART00000089609	-	4191	XM_005170047	ENSDARP00000084042	1249 (aa)	XP_005170104	F1R881

Gene Model

Click here to download ENSDARG00000062206's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000062206's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000062206	skiv2l	75	36.684	ENSDARG00000013457	mtrex	89	36.373

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000062206	skiv2l	99	60.320	ENSG00000204351	SKIV2L	99	60.142	Homo_sapiens
ENSDARG00000062206	skiv2l	100	83.147	ENSAPOG00000008257	skiv2l	100	83.307	Acanthochromis_polyacanthus
ENSDARG00000062206	skiv2l	99	60.335	ENSAMEG00000002078	SKIV2L	99	60.394	Ailuropoda_melanoleuca
ENSDARG00000062206	skiv2l	99	82.031	ENSACIG00000016719	skiv2l	99	82.272	Amphilophus_citrinellus
ENSDARG00000062206	skiv2l	100	83.227	ENSAOCG00000017352	skiv2l	100	83.466	Amphiprion_ocellaris
ENSDARG00000062206	skiv2l	100	83.147	ENSAPEG00000001055	skiv2l	100	83.387	Amphiprion_percula
ENSDARG00000062206	skiv2l	100	83.866	ENSATEG00000007601	skiv2l	100	84.105	Anabas_testudineus
ENSDARG00000062206	skiv2l	100	62.637	ENSACAG00000011746	SKIV2L	99	62.724	Anolis_carolinensis
ENSDARG00000062206	skiv2l	99	61.151	ENSANAG00000037992	SKIV2L	99	60.962	Aotus_nancymaae
ENSDARG00000062206	skiv2l	100	83.920	ENSACLG00000006886	skiv2l	100	83.920	Astatotilapia_calliptera
ENSDARG00000062206	skiv2l	100	85.360	ENSAMXG00000011517	skiv2l	100	85.452	Astyanax_mexicanus
ENSDARG00000062206	skiv2l	99	59.840	ENSBTAG00000005587	SKIV2L	99	59.984	Bos_taurus
ENSDARG00000062206	skiv2l	90	41.587	WBGene00008502	skih-2	93	42.600	Caenorhabditis_elegans
ENSDARG00000062206	skiv2l	99	60.978	ENSCJAG00000002263	SKIV2L	99	60.791	Callithrix_jacchus
ENSDARG00000062206	skiv2l	99	60.335	ENSCAFG00000000679	SKIV2L	99	60.315	Canis_familiaris
ENSDARG00000062206	skiv2l	99	60.415	ENSCAFG00020000948	SKIV2L	99	60.394	Canis_lupus_dingo
ENSDARG00000062206	skiv2l	99	60.000	ENSCHIG00000012897	SKIV2L	99	60.063	Capra_hircus
ENSDARG00000062206	skiv2l	99	60.592	ENSTSYG00000012133	SKIV2L	99	60.331	Carlito_syrichta
ENSDARG00000062206	skiv2l	99	60.611	ENSCPOG00000001307	SKIV2L	99	60.333	Cavia_porcellus
ENSDARG00000062206	skiv2l	99	61.231	ENSCCAG00000026206	SKIV2L	99	61.041	Cebus_capucinus
ENSDARG00000062206	skiv2l	99	60.497	ENSCATG00000036901	SKIV2L	99	60.379	Cercocebus_atys
ENSDARG00000062206	skiv2l	99	60.176	ENSCLAG00000007678	SKIV2L	99	60.079	Chinchilla_lanigera
ENSDARG00000062206	skiv2l	99	60.657	ENSCSAG00000008988	SKIV2L	99	60.474	Chlorocebus_sabaeus
ENSDARG00000062206	skiv2l	90	58.861	ENSCPBG00000000343	SKIV2L	96	63.372	Chrysemys_picta_bellii
ENSDARG00000062206	skiv2l	93	51.149	ENSCING00000005576	-	99	51.149	Ciona_intestinalis
ENSDARG00000062206	skiv2l	99	60.657	ENSCANG00000039709	SKIV2L	100	59.968	Colobus_angolensis_palliatus
ENSDARG00000062206	skiv2l	99	61.058	ENSCGRG00001008385	Skiv2l	99	60.791	Cricetulus_griseus_chok1gshd
ENSDARG00000062206	skiv2l	99	81.556	ENSCSEG00000011326	skiv2l	99	81.891	Cynoglossus_semilaevis
ENSDARG00000062206	skiv2l	100	84.093	ENSCVAG00000003072	skiv2l	100	84.093	Cyprinodon_variegatus
ENSDARG00000062206	skiv2l	92	65.116	ENSDNOG00000037590	SKIV2L	93	65.107	Dasypus_novemcinctus
ENSDARG00000062206	skiv2l	92	44.528	FBgn0039117	tst	96	44.612	Drosophila_melanogaster
ENSDARG00000062206	skiv2l	68	77.778	ENSETEG00000009522	SKIV2L	68	77.778	Echinops_telfairi
ENSDARG00000062206	skiv2l	91	55.423	ENSEBUG00000013680	-	98	55.423	Eptatretus_burgeri
ENSDARG00000062206	skiv2l	92	61.499	ENSEASG00005015534	SKIV2L	99	62.010	Equus_asinus_asinus
ENSDARG00000062206	skiv2l	93	60.591	ENSECAG00000021823	SKIV2L	95	60.899	Equus_caballus
ENSDARG00000062206	skiv2l	50	76.772	ENSEEUG00000005049	SKIV2L	56	76.772	Erinaceus_europaeus
ENSDARG00000062206	skiv2l	100	83.147	ENSELUG00000000181	skiv2l	100	83.147	Esox_lucius
ENSDARG00000062206	skiv2l	99	60.737	ENSFCAG00000004519	SKIV2L	99	60.791	Felis_catus
ENSDARG00000062206	skiv2l	99	59.182	ENSFDAG00000009438	SKIV2L	99	59.177	Fukomys_damarensis
ENSDARG00000062206	skiv2l	100	84.013	ENSFHEG00000008853	skiv2l	100	84.013	Fundulus_heteroclitus
ENSDARG00000062206	skiv2l	99	80.112	ENSGMOG00000005926	skiv2l	99	80.112	Gadus_morhua
ENSDARG00000062206	skiv2l	76	56.934	ENSGALG00000035499	SKIV2L	98	56.495	Gallus_gallus
ENSDARG00000062206	skiv2l	100	83.693	ENSGAFG00000002382	skiv2l	100	83.933	Gambusia_affinis
ENSDARG00000062206	skiv2l	100	82.166	ENSGACG00000002927	skiv2l	99	82.166	Gasterosteus_aculeatus
ENSDARG00000062206	skiv2l	99	60.720	ENSGGOG00000002270	SKIV2L	99	60.537	Gorilla_gorilla
ENSDARG00000062206	skiv2l	100	83.920	ENSHBUG00000000726	skiv2l	100	83.920	Haplochromis_burtoni
ENSDARG00000062206	skiv2l	99	60.560	ENSHGLG00000016596	SKIV2L	99	60.616	Heterocephalus_glaber_female
ENSDARG00000062206	skiv2l	99	59.040	ENSHGLG00100014161	SKIV2L	99	59.116	Heterocephalus_glaber_male
ENSDARG00000062206	skiv2l	98	77.417	ENSHCOG00000007191	skiv2l	100	77.417	Hippocampus_comes
ENSDARG00000062206	skiv2l	100	84.948	ENSIPUG00000016263	skiv2l	100	85.366	Ictalurus_punctatus
ENSDARG00000062206	skiv2l	99	60.300	ENSSTOG00000014596	SKIV2L	99	60.616	Ictidomys_tridecemlineatus
ENSDARG00000062206	skiv2l	56	60.884	ENSLACG00000002986	-	60	60.884	Latimeria_chalumnae
ENSDARG00000062206	skiv2l	99	60.657	ENSLAFG00000014231	SKIV2L	99	60.883	Loxodonta_africana
ENSDARG00000062206	skiv2l	99	60.657	ENSMFAG00000034235	SKIV2L	99	60.537	Macaca_fascicularis
ENSDARG00000062206	skiv2l	99	60.657	ENSMMUG00000000736	SKIV2L	99	60.537	Macaca_mulatta
ENSDARG00000062206	skiv2l	99	60.880	ENSMNEG00000044474	SKIV2L	99	60.757	Macaca_nemestrina
ENSDARG00000062206	skiv2l	99	60.417	ENSMLEG00000030512	SKIV2L	99	60.300	Mandrillus_leucophaeus
ENSDARG00000062206	skiv2l	100	83.693	ENSMAMG00000002927	skiv2l	100	83.693	Mastacembelus_armatus
ENSDARG00000062206	skiv2l	100	83.920	ENSMZEG00005026415	skiv2l	100	83.920	Maylandia_zebra
ENSDARG00000062206	skiv2l	68	49.455	ENSMGAG00000001320	SKIV2L	95	49.127	Meleagris_gallopavo
ENSDARG00000062206	skiv2l	99	60.543	ENSMAUG00000018613	Skiv2l	99	60.379	Mesocricetus_auratus
ENSDARG00000062206	skiv2l	99	60.352	ENSMICG00000046331	SKIV2L	99	60.568	Microcebus_murinus
ENSDARG00000062206	skiv2l	99	59.247	ENSMOCG00000014240	Skiv2l	99	59.209	Microtus_ochrogaster
ENSDARG00000062206	skiv2l	99	80.433	ENSMMOG00000014547	skiv2l	99	80.433	Mola_mola
ENSDARG00000062206	skiv2l	99	60.537	ENSMODG00000015052	SKIV2L	99	60.914	Monodelphis_domestica
ENSDARG00000062206	skiv2l	99	78.737	ENSMALG00000010535	skiv2l	99	78.737	Monopterus_albus
ENSDARG00000062206	skiv2l	99	60.671	MGP_CAROLIEiJ_G0021477	Skiv2l	99	60.315	Mus_caroli
ENSDARG00000062206	skiv2l	99	60.352	ENSMUSG00000040356	Skiv2l	99	60.410	Mus_musculus
ENSDARG00000062206	skiv2l	99	60.751	MGP_PahariEiJ_G0020472	Skiv2l	99	60.804	Mus_pahari
ENSDARG00000062206	skiv2l	99	60.192	MGP_SPRETEiJ_G0022382	Skiv2l	99	60.252	Mus_spretus
ENSDARG00000062206	skiv2l	99	60.512	ENSMPUG00000010567	SKIV2L	99	60.551	Mustela_putorius_furo
ENSDARG00000062206	skiv2l	99	60.256	ENSMLUG00000000628	SKIV2L	99	60.079	Myotis_lucifugus
ENSDARG00000062206	skiv2l	99	81.220	ENSNBRG00000018650	skiv2l	99	81.380	Neolamprologus_brichardi
ENSDARG00000062206	skiv2l	99	59.791	ENSNLEG00000006451	SKIV2L	100	59.730	Nomascus_leucogenys
ENSDARG00000062206	skiv2l	79	60.177	ENSMEUG00000006072	SKIV2L	78	60.177	Notamacropus_eugenii
ENSDARG00000062206	skiv2l	99	60.096	ENSOPRG00000003972	SKIV2L	99	60.079	Ochotona_princeps
ENSDARG00000062206	skiv2l	99	60.417	ENSODEG00000017516	SKIV2L	99	60.316	Octodon_degus
ENSDARG00000062206	skiv2l	100	83.626	ENSONIG00000013500	skiv2l	100	83.626	Oreochromis_niloticus
ENSDARG00000062206	skiv2l	99	60.256	ENSOCUG00000007019	SKIV2L	99	60.395	Oryctolagus_cuniculus
ENSDARG00000062206	skiv2l	100	81.934	ENSORLG00000002021	skiv2l	100	81.934	Oryzias_latipes
ENSDARG00000062206	skiv2l	100	81.775	ENSORLG00020009462	skiv2l	100	81.775	Oryzias_latipes_hni
ENSDARG00000062206	skiv2l	100	81.535	ENSORLG00015016750	skiv2l	100	81.695	Oryzias_latipes_hsok
ENSDARG00000062206	skiv2l	100	82.894	ENSOMEG00000008531	skiv2l	100	82.907	Oryzias_melastigma
ENSDARG00000062206	skiv2l	99	60.592	ENSOGAG00000009578	SKIV2L	99	60.410	Otolemur_garnettii
ENSDARG00000062206	skiv2l	99	56.518	ENSOARG00000002411	-	99	56.559	Ovis_aries
ENSDARG00000062206	skiv2l	99	60.223	ENSPPAG00000040211	SKIV2L	100	60.236	Pan_paniscus
ENSDARG00000062206	skiv2l	99	60.911	ENSPPRG00000005017	SKIV2L	99	60.962	Panthera_pardus
ENSDARG00000062206	skiv2l	99	60.512	ENSPTIG00000021656	SKIV2L	99	60.568	Panthera_tigris_altaica
ENSDARG00000062206	skiv2l	99	60.640	ENSPTRG00000017997	SKIV2L	99	60.458	Pan_troglodytes
ENSDARG00000062206	skiv2l	99	59.649	ENSPANG00000011501	SKIV2L	100	59.732	Papio_anubis
ENSDARG00000062206	skiv2l	100	79.206	ENSPKIG00000011876	skiv2l	100	79.206	Paramormyrops_kingsleyae
ENSDARG00000062206	skiv2l	99	81.461	ENSPMGG00000019707	skiv2l	99	81.942	Periophthalmus_magnuspinnatus
ENSDARG00000062206	skiv2l	99	60.096	ENSPEMG00000019001	Skiv2l	99	60.237	Peromyscus_maniculatus_bairdii
ENSDARG00000062206	skiv2l	99	60.551	ENSPCIG00000018792	SKIV2L	99	60.630	Phascolarctos_cinereus
ENSDARG00000062206	skiv2l	100	83.613	ENSPFOG00000002424	skiv2l	100	83.853	Poecilia_formosa
ENSDARG00000062206	skiv2l	100	83.773	ENSPLAG00000018304	skiv2l	100	83.773	Poecilia_latipinna
ENSDARG00000062206	skiv2l	100	83.693	ENSPMEG00000006997	skiv2l	100	83.933	Poecilia_mexicana
ENSDARG00000062206	skiv2l	99	79.839	ENSPREG00000002277	skiv2l	99	80.080	Poecilia_reticulata
ENSDARG00000062206	skiv2l	99	60.335	ENSPPYG00000016472	SKIV2L	99	60.157	Pongo_abelii
ENSDARG00000062206	skiv2l	74	77.632	ENSPCAG00000004178	SKIV2L	74	77.632	Procavia_capensis
ENSDARG00000062206	skiv2l	99	60.432	ENSPCOG00000010308	SKIV2L	99	60.568	Propithecus_coquereli
ENSDARG00000062206	skiv2l	99	61.138	ENSPVAG00000005136	SKIV2L	99	60.949	Pteropus_vampyrus
ENSDARG00000062206	skiv2l	95	84.749	ENSPNYG00000017853	skiv2l	99	84.749	Pundamilia_nyererei
ENSDARG00000062206	skiv2l	99	86.618	ENSPNAG00000011823	skiv2l	100	86.502	Pygocentrus_nattereri
ENSDARG00000062206	skiv2l	99	60.817	ENSRNOG00000000421	Skiv2l	99	60.553	Rattus_norvegicus
ENSDARG00000062206	skiv2l	99	59.459	ENSRBIG00000035485	SKIV2L	99	59.544	Rhinopithecus_bieti
ENSDARG00000062206	skiv2l	99	60.592	ENSRROG00000036429	SKIV2L	99	60.472	Rhinopithecus_roxellana
ENSDARG00000062206	skiv2l	90	40.050	YLR398C	-	90	40.050	Saccharomyces_cerevisiae
ENSDARG00000062206	skiv2l	99	61.311	ENSSBOG00000027920	SKIV2L	99	61.120	Saimiri_boliviensis_boliviensis
ENSDARG00000062206	skiv2l	99	60.537	ENSSHAG00000008963	SKIV2L	99	59.559	Sarcophilus_harrisii
ENSDARG00000062206	skiv2l	100	81.529	ENSSFOG00015016930	skiv2l	100	81.529	Scleropages_formosus
ENSDARG00000062206	skiv2l	100	83.240	ENSSMAG00000020185	skiv2l	100	83.480	Scophthalmus_maximus
ENSDARG00000062206	skiv2l	100	84.652	ENSSDUG00000019977	skiv2l	100	84.652	Seriola_dumerili
ENSDARG00000062206	skiv2l	99	79.230	ENSSLDG00000024382	skiv2l	99	79.230	Seriola_lalandi_dorsalis
ENSDARG00000062206	skiv2l	99	58.314	ENSSPUG00000012945	SKIV2L	99	58.919	Sphenodon_punctatus
ENSDARG00000062206	skiv2l	95	83.390	ENSSPAG00000012904	skiv2l	99	83.642	Stegastes_partitus
ENSDARG00000062206	skiv2l	99	60.236	ENSSSCG00000001424	SKIV2L	99	60.551	Sus_scrofa
ENSDARG00000062206	skiv2l	70	85.561	ENSTRUG00000000966	skiv2l	83	85.561	Takifugu_rubripes
ENSDARG00000062206	skiv2l	100	79.777	ENSTNIG00000004382	skiv2l	99	80.175	Tetraodon_nigroviridis
ENSDARG00000062206	skiv2l	93	62.255	ENSTBEG00000003462	SKIV2L	94	62.255	Tupaia_belangeri
ENSDARG00000062206	skiv2l	99	56.410	ENSTTRG00000005931	SKIV2L	99	56.522	Tursiops_truncatus
ENSDARG00000062206	skiv2l	99	60.654	ENSUAMG00000024336	SKIV2L	99	60.709	Ursus_americanus
ENSDARG00000062206	skiv2l	92	61.565	ENSUMAG00000012666	SKIV2L	99	61.820	Ursus_maritimus
ENSDARG00000062206	skiv2l	99	60.255	ENSVVUG00000022807	SKIV2L	99	60.189	Vulpes_vulpes
ENSDARG00000062206	skiv2l	99	58.347	ENSXETG00000010932	skiv2l	99	58.347	Xenopus_tropicalis
ENSDARG00000062206	skiv2l	99	82.598	ENSXCOG00000019517	skiv2l	97	82.839	Xiphophorus_couchianus
ENSDARG00000062206	skiv2l	100	83.280	ENSXMAG00000014079	skiv2l	100	83.520	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003724	RNA helicase activity	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0006401	RNA catabolic process	21873635.	IBA	Process
GO:0006401	RNA catabolic process	-	IEA	Process
GO:0055087	Ski complex	21873635.	IBA	Component
GO:0070478	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	21873635.	IBA	Process