EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000062650 (Gene tree)
Gene ID: 567001
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 21272 bases
Position: chr9:22780901-22802172
Accession: ZDB-GENE-030131-3406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000103401	Rif1_N	PF12231.8	1.2e-77	1	1
ENSDARP00000117051	Rif1_N	PF12231.8	1.2e-77	1	1
ENSDARP00000085249	Rif1_N	PF12231.8	1.6e-72	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000110992	-	7527	-	ENSDARP00000103401	2392 (aa)	-	B0UY57
ENSDART00000090816	-	7312	-	ENSDARP00000085249	2347 (aa)	-	F1QTV5
ENSDART00000143972	-	7574	XM_005167575	ENSDARP00000117051	2392 (aa)	XP_005167632	B0UY57

Gene Model

Click here to download ENSDARG00000062650's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000062650's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000062650	rif1	51	51.081	ENSG00000080345	RIF1	97	55.298	Homo_sapiens
ENSDARG00000062650	rif1	59	57.754	ENSAPOG00000011073	rif1	61	54.929	Acanthochromis_polyacanthus
ENSDARG00000062650	rif1	55	60.105	ENSAOCG00000017231	rif1	55	57.029	Amphiprion_ocellaris
ENSDARG00000062650	rif1	71	64.313	ENSAPEG00000013228	rif1	57	64.350	Amphiprion_percula
ENSDARG00000062650	rif1	75	55.413	ENSATEG00000022887	rif1	57	57.561	Anabas_testudineus
ENSDARG00000062650	rif1	55	48.148	ENSACAG00000003714	RIF1	56	48.173	Anolis_carolinensis
ENSDARG00000062650	rif1	52	50.779	ENSANAG00000024840	RIF1	50	51.447	Aotus_nancymaae
ENSDARG00000062650	rif1	99	56.543	ENSAMXG00000010910	rif1	99	56.543	Astyanax_mexicanus
ENSDARG00000062650	rif1	65	51.229	ENSCJAG00000003138	RIF1	63	51.675	Callithrix_jacchus
ENSDARG00000062650	rif1	68	49.611	ENSCAFG00000005670	RIF1	64	49.493	Canis_familiaris
ENSDARG00000062650	rif1	52	49.611	ENSCAFG00020016401	RIF1	52	49.493	Canis_lupus_dingo
ENSDARG00000062650	rif1	67	49.258	ENSCHIG00000020327	RIF1	66	49.452	Capra_hircus
ENSDARG00000062650	rif1	67	49.519	ENSTSYG00000008861	RIF1	64	49.435	Carlito_syrichta
ENSDARG00000062650	rif1	53	54.601	ENSCAPG00000008957	RIF1	63	54.601	Cavia_aperea
ENSDARG00000062650	rif1	52	48.295	ENSCPOG00000037898	RIF1	52	48.454	Cavia_porcellus
ENSDARG00000062650	rif1	65	49.560	ENSCCAG00000024760	RIF1	62	49.598	Cebus_capucinus
ENSDARG00000062650	rif1	66	52.670	ENSCPBG00000025885	RIF1	71	52.404	Chrysemys_picta_bellii
ENSDARG00000062650	rif1	52	48.634	ENSCGRG00001024589	Rif1	51	49.126	Cricetulus_griseus_chok1gshd
ENSDARG00000062650	rif1	57	57.040	ENSCSEG00000003945	rif1	59	57.092	Cynoglossus_semilaevis
ENSDARG00000062650	rif1	81	54.763	ENSCVAG00000022479	rif1	61	54.747	Cyprinodon_variegatus
ENSDARG00000062650	rif1	64	51.691	ENSDNOG00000011194	RIF1	60	51.738	Dasypus_novemcinctus
ENSDARG00000062650	rif1	62	52.574	ENSETEG00000012421	RIF1	61	52.574	Echinops_telfairi
ENSDARG00000062650	rif1	51	51.297	ENSEASG00005023434	RIF1	62	51.180	Equus_asinus_asinus
ENSDARG00000062650	rif1	50	56.559	ENSECAG00000012679	RIF1	51	51.270	Equus_caballus
ENSDARG00000062650	rif1	70	65.826	ENSELUG00000006826	rif1	65	65.826	Esox_lucius
ENSDARG00000062650	rif1	63	50.464	ENSFALG00000013874	RIF1	73	51.084	Ficedula_albicollis
ENSDARG00000062650	rif1	52	50.275	ENSFDAG00000006538	RIF1	51	50.352	Fukomys_damarensis
ENSDARG00000062650	rif1	72	59.155	ENSFHEG00000013721	rif1	80	57.650	Fundulus_heteroclitus
ENSDARG00000062650	rif1	62	58.042	ENSGMOG00000003517	rif1	96	58.042	Gadus_morhua
ENSDARG00000062650	rif1	72	59.654	ENSGAFG00000017196	rif1	92	60.807	Gambusia_affinis
ENSDARG00000062650	rif1	68	61.538	ENSGACG00000008579	rif1	75	61.538	Gasterosteus_aculeatus
ENSDARG00000062650	rif1	65	52.075	ENSGAGG00000012595	RIF1	71	50.648	Gopherus_agassizii
ENSDARG00000062650	rif1	60	57.629	ENSHBUG00000007125	rif1	63	57.576	Haplochromis_burtoni
ENSDARG00000062650	rif1	75	55.857	ENSHCOG00000015943	rif1	68	56.142	Hippocampus_comes
ENSDARG00000062650	rif1	99	57.063	ENSIPUG00000021703	rif1	99	57.137	Ictalurus_punctatus
ENSDARG00000062650	rif1	52	48.973	ENSJJAG00000023000	Rif1	59	45.461	Jaculus_jaculus
ENSDARG00000062650	rif1	64	53.034	ENSKMAG00000002852	rif1	61	55.326	Kryptolebias_marmoratus
ENSDARG00000062650	rif1	71	63.142	ENSLBEG00000023196	rif1	64	63.142	Labrus_bergylta
ENSDARG00000062650	rif1	66	54.905	ENSLACG00000005425	RIF1	76	51.944	Latimeria_chalumnae
ENSDARG00000062650	rif1	86	59.062	ENSLOCG00000002657	rif1	98	55.712	Lepisosteus_oculatus
ENSDARG00000062650	rif1	53	50.778	ENSLAFG00000009796	RIF1	65	50.664	Loxodonta_africana
ENSDARG00000062650	rif1	61	59.229	ENSMAMG00000001745	rif1	59	59.335	Mastacembelus_armatus
ENSDARG00000062650	rif1	75	61.756	ENSMZEG00005020920	rif1	93	61.756	Maylandia_zebra
ENSDARG00000062650	rif1	87	53.733	ENSMGAG00000012732	RIF1	98	49.566	Meleagris_gallopavo
ENSDARG00000062650	rif1	52	51.667	ENSMICG00000046127	RIF1	51	51.554	Microcebus_murinus
ENSDARG00000062650	rif1	72	59.218	ENSMMOG00000006519	rif1	70	59.218	Mola_mola
ENSDARG00000062650	rif1	65	52.000	ENSMODG00000003703	RIF1	64	51.888	Monodelphis_domestica
ENSDARG00000062650	rif1	72	61.732	ENSMALG00000016759	rif1	96	61.732	Monopterus_albus
ENSDARG00000062650	rif1	65	50.849	ENSMUSG00000036202	Rif1	71	47.484	Mus_musculus
ENSDARG00000062650	rif1	53	48.228	MGP_PahariEiJ_G0025006	Rif1	51	48.523	Mus_pahari
ENSDARG00000062650	rif1	52	51.202	MGP_SPRETEiJ_G0024476	Rif1	59	48.028	Mus_spretus
ENSDARG00000062650	rif1	72	51.685	ENSMPUG00000000371	RIF1	68	51.571	Mustela_putorius_furo
ENSDARG00000062650	rif1	75	63.450	ENSNBRG00000014257	rif1	93	63.450	Neolamprologus_brichardi
ENSDARG00000062650	rif1	51	48.960	ENSODEG00000003950	RIF1	50	49.161	Octodon_degus
ENSDARG00000062650	rif1	58	58.386	ENSONIG00000013657	rif1	66	58.298	Oreochromis_niloticus
ENSDARG00000062650	rif1	58	57.008	ENSOANG00000006078	-	63	57.008	Ornithorhynchus_anatinus
ENSDARG00000062650	rif1	51	50.717	ENSOCUG00000017435	RIF1	50	51.127	Oryctolagus_cuniculus
ENSDARG00000062650	rif1	71	61.562	ENSORLG00020001302	rif1	73	61.562	Oryzias_latipes_hni
ENSDARG00000062650	rif1	58	55.675	ENSOMEG00000021513	rif1	58	55.927	Oryzias_melastigma
ENSDARG00000062650	rif1	51	52.212	ENSOGAG00000006141	RIF1	50	52.100	Otolemur_garnettii
ENSDARG00000062650	rif1	67	50.712	ENSPPRG00000003618	RIF1	64	50.596	Panthera_pardus
ENSDARG00000062650	rif1	91	62.404	ENSPKIG00000004267	rif1	93	62.404	Paramormyrops_kingsleyae
ENSDARG00000062650	rif1	71	59.938	ENSPMGG00000016141	rif1	81	59.938	Periophthalmus_magnuspinnatus
ENSDARG00000062650	rif1	65	61.765	ENSPFOG00000000554	-	72	60.734	Poecilia_formosa
ENSDARG00000062650	rif1	83	62.059	ENSPLAG00000017945	rif1	91	61.299	Poecilia_latipinna
ENSDARG00000062650	rif1	61	60.286	ENSPMEG00000006897	-	70	58.791	Poecilia_mexicana
ENSDARG00000062650	rif1	67	66.807	ENSPREG00000018052	rif1	70	61.151	Poecilia_reticulata
ENSDARG00000062650	rif1	65	51.481	ENSPPYG00000012846	RIF1	62	51.730	Pongo_abelii
ENSDARG00000062650	rif1	52	51.697	ENSPCOG00000027888	RIF1	51	51.855	Propithecus_coquereli
ENSDARG00000062650	rif1	75	61.756	ENSPNYG00000012940	rif1	93	61.756	Pundamilia_nyererei
ENSDARG00000062650	rif1	99	56.884	ENSPNAG00000016685	rif1	99	56.884	Pygocentrus_nattereri
ENSDARG00000062650	rif1	51	49.518	ENSRNOG00000054901	Rif1	58	45.645	Rattus_norvegicus
ENSDARG00000062650	rif1	62	54.878	ENSSBOG00000029530	RIF1	61	53.247	Saimiri_boliviensis_boliviensis
ENSDARG00000062650	rif1	70	63.380	ENSSFOG00015021539	rif1	83	58.494	Scleropages_formosus
ENSDARG00000062650	rif1	81	61.458	ENSSMAG00000011704	rif1	73	61.458	Scophthalmus_maximus
ENSDARG00000062650	rif1	71	51.563	ENSSDUG00000015632	rif1	73	52.381	Seriola_dumerili
ENSDARG00000062650	rif1	64	51.340	ENSSPUG00000003062	RIF1	66	52.103	Sphenodon_punctatus
ENSDARG00000062650	rif1	60	61.972	ENSSPAG00000018359	rif1	95	61.522	Stegastes_partitus
ENSDARG00000062650	rif1	74	51.564	ENSSSCG00000016395	RIF1	70	51.691	Sus_scrofa
ENSDARG00000062650	rif1	78	57.504	ENSTRUG00000015808	rif1	95	50.800	Takifugu_rubripes
ENSDARG00000062650	rif1	73	56.961	ENSTNIG00000011538	rif1	76	57.133	Tetraodon_nigroviridis
ENSDARG00000062650	rif1	59	52.469	ENSTBEG00000016082	RIF1	57	51.875	Tupaia_belangeri
ENSDARG00000062650	rif1	55	47.154	ENSUAMG00000026385	RIF1	58	47.154	Ursus_americanus
ENSDARG00000062650	rif1	51	49.644	ENSVPAG00000002162	RIF1	62	49.524	Vicugna_pacos
ENSDARG00000062650	rif1	67	49.922	ENSVVUG00000011293	RIF1	65	49.803	Vulpes_vulpes
ENSDARG00000062650	rif1	65	43.367	ENSXETG00000004530	rif1	62	44.444	Xenopus_tropicalis
ENSDARG00000062650	rif1	72	54.043	ENSXMAG00000000506	rif1	71	54.267	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000723	telomere maintenance	21873635.	IBA	Process
GO:0005634	nucleus	21873635.	IBA	Component